Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 120.00216 * 2 1 4 4 H 1.48495 * 109.47012 * 270.00273 * 3 2 1 5 5 H 1.48507 * 109.46929 * 30.00388 * 3 2 1 6 6 H 1.48500 * 109.47087 * 149.99843 * 3 2 1 7 7 C 1.39951 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99621 * 197.84485 * 7 2 1 9 9 C 1.41389 * 120.00309 * 17.84522 * 7 2 1 10 10 C 1.40710 * 120.24637 * 204.38427 * 9 7 2 11 11 C 1.37618 * 119.74678 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24698 * 0.02617 * 11 10 9 13 13 C 1.50699 * 119.74434 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47206 * 90.00042 * 13 12 11 15 15 C 1.34778 * 120.00006 * 179.97438 * 14 13 12 16 16 O 1.21585 * 119.99919 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00218 * 179.97438 * 15 14 13 18 18 C 1.46497 * 120.00184 * 180.02562 * 17 15 14 19 19 C 1.53046 * 113.15295 * 204.99917 * 18 17 15 20 20 S 1.81429 * 89.93267 * 277.62197 * 19 18 17 21 21 C 1.53048 * 113.15313 * 104.62591 * 18 17 15 22 22 C 1.38631 * 120.49859 * 0.24718 * 12 11 10 23 23 C 1.37610 * 120.24987 * 359.45010 * 22 12 11 24 24 H 0.97003 * 119.99840 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.12860 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.87809 * 179.97438 * 11 10 9 27 27 H 1.09002 * 109.47384 * 329.99425 * 13 12 11 28 28 H 1.09008 * 109.46507 * 209.99869 * 13 12 11 29 29 H 0.96996 * 120.00476 * 359.97438 * 14 13 12 30 30 H 0.96998 * 119.99764 * 359.97438 * 17 15 14 31 31 H 1.09001 * 112.52760 * 334.80995 * 18 17 15 32 32 H 1.08999 * 113.14726 * 32.89762 * 19 18 17 33 33 H 1.08998 * 113.15330 * 162.34346 * 19 18 17 34 34 H 1.09003 * 113.14394 * 197.61603 * 21 18 17 35 35 H 1.08992 * 113.14485 * 327.05875 * 21 18 17 36 36 H 1.07998 * 119.87062 * 179.70749 * 22 12 11 37 37 H 1.08002 * 120.12619 * 180.27346 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6527 0.7002 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2861 9 6 1.3519 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0824 11 6 1.1796 -4.8065 -0.2901 12 6 0.0664 -4.7502 -1.1146 13 6 -0.6319 -6.0238 -1.5160 14 7 -1.6750 -6.3384 -0.5365 15 6 -2.4350 -7.4405 -0.6919 16 8 -2.2553 -8.1734 -1.6453 17 7 -3.3943 -7.7302 0.2093 18 6 -4.2200 -8.9284 0.0407 19 6 -5.5849 -8.8198 0.7245 20 16 -4.8285 -9.2918 2.3046 21 6 -3.8367 -10.0625 0.9943 22 6 -0.4056 -3.5315 -1.5770 23 6 0.2209 -2.3618 -1.2123 24 1 -0.4850 0.8401 0.0004 25 1 2.6929 -3.6962 0.7244 26 1 1.5417 -5.7617 0.0603 27 1 0.0909 -6.8389 -1.5515 28 1 -1.0838 -5.8958 -2.4997 29 1 -1.8187 -5.7535 0.2238 30 1 -3.5374 -7.1456 0.9701 31 1 -4.2860 -9.2471 -0.9996 32 1 -5.9836 -7.8053 0.7265 33 1 -6.3065 -9.5507 0.3596 34 1 -4.2210 -11.0334 0.6817 35 1 -2.7710 -10.0893 1.2216 36 1 -1.2708 -3.4997 -2.2226 37 1 -0.1513 -1.4132 -1.5701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230385113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = 6.192495 kcal Electronic energy + Delta-G solvation = -19883.125423 eV Core-core repulsion = 16751.731855 eV Total energy + Delta-G solvation = -3131.393568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97977 -37.86576 -36.96520 -34.65849 -33.48088 -32.24025 -30.11373 -29.36141 -26.80554 -26.62966 -23.85456 -22.01775 -21.09021 -20.73867 -20.10650 -18.39408 -17.40600 -17.00194 -16.40223 -15.46612 -15.32440 -14.94049 -14.54995 -14.10261 -13.94440 -13.64739 -13.36960 -13.35523 -13.21154 -13.09480 -12.53574 -12.06265 -12.00922 -11.69410 -11.29199 -11.18733 -11.05910 -10.72809 -10.47007 -10.37121 -10.07168 -9.71351 -9.49538 -9.30305 -9.25288 -8.55776 -8.09469 -7.58885 -7.47071 -6.88792 -4.48217 1.46338 1.60594 2.44586 2.84559 2.97293 3.01412 3.04185 3.16569 3.30854 3.84152 4.11406 4.34694 4.50649 4.62266 4.78194 4.93467 5.13931 5.33122 5.38446 5.58691 5.78574 5.92765 6.22915 6.27826 6.34107 6.38928 6.84530 6.86049 6.96235 7.09369 7.18023 7.25382 7.49838 7.72847 7.94272 8.00302 8.17703 8.23549 8.52388 8.77074 8.77270 8.85136 10.05148 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.002746 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.841581 B =10195.861857 C =10587.280893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.246 4.246 13 C 0.203 3.797 14 N -0.731 5.731 15 C 0.702 3.298 16 O -0.600 6.600 17 N -0.730 5.730 18 C 0.164 3.836 19 C -0.094 4.094 20 S -0.295 6.295 21 C -0.098 4.098 22 C -0.080 4.080 23 C -0.170 4.170 24 H 0.282 0.718 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.398 0.602 30 H 0.403 0.597 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -11.417 1.153 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.250 4.250 11 C -0.087 4.087 12 C -0.248 4.248 13 C 0.081 3.919 14 N -0.385 5.385 15 C 0.402 3.598 16 O -0.479 6.479 17 N -0.386 5.386 18 C 0.055 3.945 19 C -0.243 4.243 20 S -0.071 6.071 21 C -0.248 4.248 22 C -0.099 4.099 23 C -0.189 4.189 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.232 0.768 30 H 0.239 0.761 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.203 -11.750 1.702 15.021 hybrid contribution 0.213 1.166 -0.112 1.191 sum -8.990 -10.584 1.590 13.977 Atomic orbital electron populations 1.69816 1.07649 1.29457 1.34266 1.25951 0.94757 1.01487 0.92114 0.86285 0.80520 0.80370 0.79444 1.19155 1.20239 1.18535 1.19676 0.98238 0.91286 1.39497 0.90252 1.17673 0.90880 0.92049 0.88008 1.20976 1.03989 0.92817 1.07175 1.20412 0.95110 0.96494 0.96724 1.18995 1.02029 0.92755 1.10986 1.19827 0.87260 0.94849 0.89970 1.45750 1.37220 1.25268 1.30222 1.16062 0.79309 0.82073 0.82368 1.90887 1.72592 1.51797 1.32594 1.44854 1.37502 1.27164 1.29048 1.21110 0.87502 0.84677 1.01251 1.24763 1.00560 1.06809 0.92182 1.89123 1.38474 1.67087 1.12388 1.25047 1.04400 1.02170 0.93225 1.20560 0.98017 0.92550 0.98800 1.21311 0.99561 0.96775 1.01245 0.90697 0.88917 0.89373 0.92569 0.92486 0.76784 0.76101 0.85717 0.87846 0.86436 0.86936 0.88102 0.89378 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.42 10.95 55.55 0.61 -18.82 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.93 29.60 -169.99 -5.03 12.90 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.64 9.05 -37.74 -0.34 -11.98 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.12 2.96 5.57 -106.83 -0.60 2.37 16 10 C -0.23 -5.36 9.80 -38.87 -0.38 -5.74 16 11 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 12 C -0.25 -4.97 5.27 -104.33 -0.55 -5.52 16 13 C 0.20 3.59 5.79 -5.20 -0.03 3.56 16 14 N -0.73 -11.36 5.55 -66.41 -0.37 -11.73 16 15 C 0.70 10.68 8.57 -86.92 -0.74 9.93 16 16 O -0.60 -11.09 15.95 5.29 0.08 -11.01 16 17 N -0.73 -8.27 5.14 -68.79 -0.35 -8.62 16 18 C 0.16 1.52 4.09 -67.88 -0.28 1.24 16 19 C -0.09 -0.68 7.70 37.18 0.29 -0.40 16 20 S -0.30 -2.92 24.32 -107.50 -2.61 -5.54 16 21 C -0.10 -0.85 7.76 37.18 0.29 -0.56 16 22 C -0.08 -1.75 9.67 -39.67 -0.38 -2.14 16 23 C -0.17 -4.17 8.70 -38.87 -0.34 -4.51 16 24 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 25 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 26 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.06 1.02 8.08 -51.92 -0.42 0.61 16 29 H 0.40 5.79 8.48 -40.82 -0.35 5.45 16 30 H 0.40 4.07 8.42 -40.82 -0.34 3.72 16 31 H 0.13 1.21 7.48 -51.93 -0.39 0.82 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.12 3.02 6.16 -52.49 -0.32 2.69 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -28.19 329.23 -11.00 -39.19 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -4.75 Total: 12.51 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.54 Total: -13.85 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.11 Total: -39.16 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.61 Total: -5.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.19 -11.00 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230385113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.380 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds