Wall clock time and date at job start Tue Mar 31 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 120.00216 * 2 1 4 4 H 1.48495 * 109.47012 * 270.00273 * 3 2 1 5 5 H 1.48507 * 109.46929 * 30.00388 * 3 2 1 6 6 H 1.48500 * 109.47087 * 149.99843 * 3 2 1 7 7 C 1.39951 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99621 * 197.84485 * 7 2 1 9 9 C 1.41389 * 120.00309 * 17.84522 * 7 2 1 10 10 C 1.40710 * 120.24637 * 204.38427 * 9 7 2 11 11 C 1.37618 * 119.74678 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24698 * 0.02617 * 11 10 9 13 13 C 1.50699 * 119.74434 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47206 * 90.00042 * 13 12 11 15 15 C 1.34778 * 120.00006 * 179.97438 * 14 13 12 16 16 O 1.21585 * 119.99919 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00218 * 179.97438 * 15 14 13 18 18 C 1.46497 * 120.00184 * 180.02562 * 17 15 14 19 19 C 1.53046 * 113.15295 * 204.99917 * 18 17 15 20 20 S 1.81429 * 89.93267 * 277.62197 * 19 18 17 21 21 C 1.53048 * 113.15313 * 104.62591 * 18 17 15 22 22 C 1.38631 * 120.49859 * 0.24718 * 12 11 10 23 23 C 1.37610 * 120.24987 * 359.45010 * 22 12 11 24 24 H 0.97003 * 119.99840 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.12860 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.87809 * 179.97438 * 11 10 9 27 27 H 1.09002 * 109.47384 * 329.99425 * 13 12 11 28 28 H 1.09008 * 109.46507 * 209.99869 * 13 12 11 29 29 H 0.96996 * 120.00476 * 359.97438 * 14 13 12 30 30 H 0.96998 * 119.99764 * 359.97438 * 17 15 14 31 31 H 1.09001 * 112.52760 * 334.80995 * 18 17 15 32 32 H 1.08999 * 113.14726 * 32.89762 * 19 18 17 33 33 H 1.08998 * 113.15330 * 162.34346 * 19 18 17 34 34 H 1.09003 * 113.14394 * 197.61603 * 21 18 17 35 35 H 1.08992 * 113.14485 * 327.05875 * 21 18 17 36 36 H 1.07998 * 119.87062 * 179.70749 * 22 12 11 37 37 H 1.08002 * 120.12619 * 180.27346 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6527 0.7002 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2861 9 6 1.3519 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0824 11 6 1.1796 -4.8065 -0.2901 12 6 0.0664 -4.7502 -1.1146 13 6 -0.6319 -6.0238 -1.5160 14 7 -1.6750 -6.3384 -0.5365 15 6 -2.4350 -7.4405 -0.6919 16 8 -2.2553 -8.1734 -1.6453 17 7 -3.3943 -7.7302 0.2093 18 6 -4.2200 -8.9284 0.0407 19 6 -5.5849 -8.8198 0.7245 20 16 -4.8285 -9.2918 2.3046 21 6 -3.8367 -10.0625 0.9943 22 6 -0.4056 -3.5315 -1.5770 23 6 0.2209 -2.3618 -1.2123 24 1 -0.4850 0.8401 0.0004 25 1 2.6929 -3.6962 0.7244 26 1 1.5417 -5.7617 0.0603 27 1 0.0909 -6.8389 -1.5515 28 1 -1.0838 -5.8958 -2.4997 29 1 -1.8187 -5.7535 0.2238 30 1 -3.5374 -7.1456 0.9701 31 1 -4.2860 -9.2471 -0.9996 32 1 -5.9836 -7.8053 0.7265 33 1 -6.3065 -9.5507 0.3596 34 1 -4.2210 -11.0334 0.6817 35 1 -2.7710 -10.0893 1.2216 36 1 -1.2708 -3.4997 -2.2226 37 1 -0.1513 -1.4132 -1.5701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230385113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:14 Heat of formation + Delta-G solvation = -10.540754 kcal Electronic energy + Delta-G solvation = -19883.851031 eV Core-core repulsion = 16751.731855 eV Total energy + Delta-G solvation = -3132.119176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14460 -39.52501 -37.96282 -36.21894 -35.06020 -33.34780 -31.73243 -31.14005 -28.43822 -27.27474 -25.45669 -23.03496 -22.86371 -21.80649 -21.78028 -19.57083 -19.22959 -17.89096 -17.33075 -17.13503 -16.55034 -16.17616 -15.85815 -15.63847 -15.46664 -15.01176 -14.56996 -14.21796 -14.19673 -13.92988 -13.85364 -13.81241 -13.53514 -13.38881 -12.82264 -12.71927 -12.46916 -12.08654 -11.99591 -11.54256 -11.38352 -11.27017 -11.04740 -11.01685 -10.38572 -9.78558 -9.38704 -9.27818 -8.86164 -8.66694 -6.36446 0.81491 0.83058 0.90210 1.15032 1.38791 1.45772 1.51429 1.81913 2.13415 2.20077 2.70398 3.35061 3.39135 3.76636 3.79154 4.10958 4.19288 4.35542 4.37958 4.53538 4.55773 4.60981 4.67432 4.70005 4.84811 5.05898 5.15177 5.36642 5.43990 5.45727 5.56263 5.69589 5.88979 6.04824 6.09497 6.22067 6.37203 6.68852 6.92481 7.01005 7.08581 7.57714 8.29665 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.002746 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.841581 B =10195.861857 C =10587.280893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.086 3.914 10 C -0.244 4.244 11 C -0.067 4.067 12 C -0.226 4.226 13 C 0.213 3.787 14 N -0.730 5.730 15 C 0.704 3.296 16 O -0.631 6.631 17 N -0.717 5.717 18 C 0.155 3.845 19 C -0.068 4.068 20 S -0.350 6.350 21 C -0.084 4.084 22 C -0.081 4.081 23 C -0.192 4.192 24 H 0.289 0.711 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.404 0.596 30 H 0.411 0.589 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 -12.447 1.018 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.083 3.917 10 C -0.264 4.264 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.090 3.910 14 N -0.384 5.384 15 C 0.404 3.596 16 O -0.513 6.513 17 N -0.373 5.373 18 C 0.046 3.954 19 C -0.217 4.217 20 S -0.126 6.126 21 C -0.234 4.234 22 C -0.099 4.099 23 C -0.211 4.211 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.133 0.867 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.248 0.752 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.244 -12.797 1.603 16.470 hybrid contribution 0.441 1.297 -0.091 1.373 sum -9.803 -11.500 1.512 15.187 Atomic orbital electron populations 1.69858 1.08908 1.30655 1.34953 1.26733 0.95501 1.04436 0.91214 0.85226 0.79117 0.76035 0.79505 1.18751 1.19215 1.18308 1.19893 0.98407 0.92604 1.41711 0.90669 1.18001 0.91724 0.93047 0.88881 1.21157 1.04548 0.93076 1.07621 1.20683 0.94819 0.96866 0.96196 1.19219 1.01260 0.93309 1.09023 1.19602 0.87697 0.93355 0.90350 1.45462 1.37060 1.25799 1.30043 1.16065 0.79618 0.81436 0.82449 1.90871 1.73615 1.52716 1.34103 1.44758 1.36499 1.27803 1.28225 1.21319 0.88442 0.84021 1.01592 1.24770 0.99655 1.08054 0.89184 1.89405 1.40179 1.68007 1.14971 1.25052 1.03386 1.03020 0.91917 1.20762 0.98223 0.92292 0.98669 1.21263 1.00375 0.97107 1.02395 0.90025 0.88536 0.86710 0.92221 0.92483 0.76098 0.75245 0.85611 0.87200 0.83525 0.84382 0.89496 0.87620 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.34 10.95 21.83 0.24 -41.10 16 2 C 0.04 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 37.16 29.60 68.60 2.03 39.19 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 7 C -0.50 -26.11 9.05 23.46 0.21 -25.89 16 8 H 0.08 3.83 7.91 -2.91 -0.02 3.81 16 9 C 0.09 4.48 5.57 -21.29 -0.12 4.36 16 10 C -0.24 -11.48 9.80 22.73 0.22 -11.26 16 11 C -0.07 -2.73 9.67 22.22 0.21 -2.52 16 12 C -0.23 -8.85 5.27 -19.67 -0.10 -8.95 16 13 C 0.21 7.10 5.79 85.63 0.50 7.60 16 14 N -0.73 -21.25 5.55 -482.29 -2.68 -23.93 16 15 C 0.70 20.07 8.57 179.06 1.53 21.60 16 16 O -0.63 -22.24 15.95 -3.98 -0.06 -22.30 16 17 N -0.72 -14.78 5.14 -489.82 -2.52 -17.29 16 18 C 0.15 2.48 4.09 45.02 0.18 2.66 16 19 C -0.07 -0.78 7.70 72.00 0.55 -0.23 16 20 S -0.35 -6.32 24.32 -56.49 -1.37 -7.69 16 21 C -0.08 -1.27 7.76 72.00 0.56 -0.71 16 22 C -0.08 -3.49 9.67 22.22 0.21 -3.27 16 23 C -0.19 -9.66 8.70 22.73 0.20 -9.46 16 24 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 25 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 26 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 28 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 29 H 0.40 10.98 8.48 -92.71 -0.79 10.20 16 30 H 0.41 7.47 8.42 -92.71 -0.78 6.69 16 31 H 0.13 2.11 7.48 -2.39 -0.02 2.09 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16 Total: -1.00 -61.72 329.23 -0.22 -61.94 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.46 Total: 35.01 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.61 Total: -23.82 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -4.96 Total: -82.32 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.37 Total: -7.69 kcal Total: -61.72 -0.22 -61.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230385113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.396 kcal (2) G-P(sol) polarization free energy of solvation -61.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds