Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39066 * 120.56254 * 130.37424 * 3 2 1 5 5 C 1.39413 * 119.80573 * 180.02562 * 4 3 2 6 6 C 1.47928 * 119.50978 * 179.97438 * 5 4 3 7 7 C 1.39736 * 119.98991 * 359.73484 * 6 5 4 8 8 C 1.37600 * 119.99715 * 179.72103 * 7 6 5 9 9 C 1.39751 * 119.99967 * 0.54657 * 8 7 6 10 10 C 1.47726 * 120.00634 * 179.74459 * 9 8 7 11 11 N 1.34780 * 119.99881 * 359.97438 * 10 9 8 12 12 O 1.21568 * 120.00159 * 179.97438 * 10 9 8 13 13 C 1.39753 * 119.99359 * 359.72421 * 9 8 7 14 14 C 1.37600 * 119.99590 * 359.97438 * 13 9 8 15 15 C 1.40017 * 120.99431 * 0.02562 * 5 4 3 16 16 C 1.36010 * 121.18429 * 359.70782 * 15 5 4 17 17 C 1.41045 * 120.11043 * 0.56965 * 16 15 5 18 18 C 1.40436 * 120.48814 * 179.71108 * 17 16 15 19 19 H 1.07995 * 120.00406 * 208.61193 * 18 17 16 20 20 C 1.40360 * 119.99830 * 28.61827 * 18 17 16 21 21 N 1.30594 * 120.00083 * 197.64378 * 20 18 17 22 22 Si 1.86802 * 119.99972 * 17.64478 * 20 18 17 23 23 H 1.48506 * 109.47012 * 270.00209 * 22 20 18 24 24 H 1.48500 * 109.47197 * 29.99918 * 22 20 18 25 25 H 1.48504 * 109.47477 * 150.00408 * 22 20 18 26 26 H 1.08006 * 120.09775 * 0.04728 * 4 3 2 27 27 H 1.07993 * 119.99806 * 359.96932 * 7 6 5 28 28 H 1.08001 * 119.99769 * 180.26886 * 8 7 6 29 29 H 0.97004 * 119.99774 * 359.97438 * 11 10 9 30 30 H 0.96996 * 120.00367 * 179.97438 * 11 10 9 31 31 H 1.08002 * 120.00728 * 179.97438 * 13 9 8 32 32 H 1.08001 * 120.00023 * 180.02562 * 14 13 9 33 33 H 1.07996 * 119.41114 * 179.97438 * 15 5 4 34 34 H 1.08002 * 119.94768 * 180.31227 * 16 15 5 35 35 H 0.96994 * 120.00270 * 355.45445 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2748 0.7766 -0.9123 5 6 4.6688 0.7649 -0.8986 6 6 5.4141 1.5924 -1.8723 7 6 4.7205 2.3738 -2.8002 8 6 5.4135 3.1480 -3.7023 9 6 6.8110 3.1441 -3.6979 10 6 7.5551 3.9709 -4.6699 11 7 6.8862 4.7287 -5.5615 12 8 8.7708 3.9678 -4.6657 13 6 7.5045 2.3583 -2.7734 14 6 6.8113 1.5889 -1.8674 15 6 5.3743 -0.0192 0.0223 16 6 4.7240 -0.7891 0.9357 17 6 3.3141 -0.8182 0.9610 18 6 2.6346 -1.6150 1.8968 19 1 1.6567 -2.0085 1.6621 20 6 3.2265 -1.8999 3.1372 21 7 2.7822 -2.8926 3.8601 22 14 4.6496 -0.8589 3.7541 23 1 5.9313 -1.4463 3.2876 24 1 4.5174 0.5229 3.2263 25 1 4.6316 -0.8256 5.2386 26 1 2.7453 1.3869 -1.6290 27 1 3.6405 2.3731 -2.8067 28 1 4.8774 3.7553 -4.4166 29 1 5.9162 4.7309 -5.5651 30 1 7.3748 5.2719 -6.1995 31 1 8.5845 2.3547 -2.7701 32 1 7.3471 0.9819 -1.1527 33 1 6.4541 -0.0092 0.0099 34 1 5.2882 -1.3823 1.6401 35 1 2.0021 -3.3916 3.5716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239870934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = 1.024283 kcal Electronic energy + Delta-G solvation = -20922.558708 eV Core-core repulsion = 17655.497078 eV Total energy + Delta-G solvation = -3267.061630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05168 -40.05455 -38.74940 -37.11316 -36.03344 -34.82521 -33.39388 -32.41473 -31.45925 -30.67240 -27.28475 -24.94109 -24.29558 -22.90978 -22.62062 -21.45367 -20.26139 -19.36359 -18.83463 -17.77564 -16.95375 -16.55817 -16.21808 -15.98065 -15.75958 -15.73796 -15.26217 -14.86907 -14.75076 -14.60180 -14.39418 -14.11596 -13.79634 -13.77209 -13.55286 -13.03217 -12.95949 -12.62769 -12.46600 -12.12374 -11.80717 -11.70849 -11.39703 -11.11638 -10.97362 -10.68501 -10.34219 -9.86094 -9.68123 -9.62966 -8.94774 -6.75322 -0.31915 0.26295 0.57758 0.85488 1.39766 1.57271 1.77340 1.89878 1.92656 2.12843 2.30881 2.57497 2.64483 3.06130 3.39211 3.49119 3.87569 3.90057 4.07277 4.17160 4.20546 4.36263 4.54678 4.56335 4.78711 4.83469 4.96483 5.09657 5.18908 5.30191 5.32815 5.38826 5.48061 5.64776 5.65766 5.83688 5.92072 5.99835 6.06112 6.14375 6.33974 6.48043 6.52883 6.81343 7.35160 7.70977 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.003720 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.514494 B = 7524.481100 C = 8554.789250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.301 3.699 3 C -0.193 4.193 4 C 0.015 3.985 5 C -0.196 4.196 6 C 0.025 3.975 7 C -0.152 4.152 8 C -0.062 4.062 9 C -0.183 4.183 10 C 0.564 3.436 11 N -0.832 5.832 12 O -0.595 6.595 13 C -0.058 4.058 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.251 4.251 17 C 0.126 3.874 18 C -0.502 4.502 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.803 5.803 22 Si 1.098 2.902 23 H -0.237 1.237 24 H -0.249 1.249 25 H -0.283 1.283 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.416 0.584 30 H 0.411 0.589 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 11.460 -11.955 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C -0.009 4.009 3 C -0.199 4.199 4 C -0.005 4.005 5 C -0.198 4.198 6 C 0.025 3.975 7 C -0.170 4.170 8 C -0.080 4.080 9 C -0.186 4.186 10 C 0.352 3.648 11 N -0.396 5.396 12 O -0.477 6.477 13 C -0.077 4.077 14 C -0.166 4.166 15 C -0.037 4.037 16 C -0.269 4.269 17 C 0.121 3.879 18 C -0.529 4.529 19 H 0.067 0.933 20 C -0.205 4.205 21 N -0.422 5.422 22 Si 0.915 3.085 23 H -0.161 1.161 24 H -0.173 1.173 25 H -0.209 1.209 26 H 0.156 0.844 27 H 0.160 0.840 28 H 0.177 0.823 29 H 0.249 0.751 30 H 0.243 0.757 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.853 11.377 -10.572 17.877 hybrid contribution -1.787 -0.777 -1.159 2.267 sum 7.066 10.600 -11.731 17.318 Atomic orbital electron populations 1.81036 1.13353 1.13099 1.12608 1.25989 0.92999 0.91015 0.90860 1.16991 0.82913 1.10679 1.09273 1.21023 0.93330 0.92798 0.93376 1.18111 0.91737 1.07011 1.02896 1.19090 0.93042 0.92763 0.92599 1.21384 1.00996 0.98259 0.96321 1.21385 0.91965 0.97016 0.97683 1.19876 0.94416 1.03659 1.00692 1.18445 0.86484 0.79064 0.80807 1.43578 1.12199 1.47431 1.36386 1.90774 1.15621 1.67776 1.73519 1.21195 1.00393 0.93355 0.92766 1.21323 0.93229 1.01369 1.00649 1.20924 1.00270 0.91124 0.91351 1.20910 0.92707 1.07917 1.05408 1.18766 0.92498 0.87046 0.89603 1.20846 1.04061 1.26457 1.01525 0.93347 1.28807 1.03823 0.94806 0.93064 1.70499 1.19465 1.11534 1.40736 0.83377 0.72948 0.76390 0.75759 1.16112 1.17274 1.20937 0.84413 0.84029 0.82320 0.75148 0.75650 0.85334 0.84012 0.83941 0.85861 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.27 18.54 19.01 0.35 -23.92 16 2 C 0.30 13.31 14.34 88.33 1.27 14.58 16 3 C -0.19 -7.88 5.93 -19.63 -0.12 -8.00 16 4 C 0.02 0.50 9.12 22.75 0.21 0.71 16 5 C -0.20 -6.00 5.88 -20.00 -0.12 -6.12 16 6 C 0.03 0.65 5.88 -19.99 -0.12 0.53 16 7 C -0.15 -3.21 9.40 22.48 0.21 -3.00 16 8 C -0.06 -1.08 9.52 22.48 0.21 -0.86 16 9 C -0.18 -3.98 5.88 -20.04 -0.12 -4.10 16 10 C 0.56 12.42 8.04 86.75 0.70 13.12 16 11 N -0.83 -9.89 8.82 -175.68 -1.55 -11.44 16 12 O -0.59 -18.21 17.17 -3.93 -0.07 -18.28 16 13 C -0.06 -1.39 9.58 22.49 0.22 -1.17 16 14 C -0.15 -3.53 9.40 22.48 0.21 -3.31 16 15 C -0.02 -0.57 9.30 22.18 0.21 -0.37 16 16 C -0.25 -9.43 7.21 22.44 0.16 -9.27 16 17 C 0.13 5.54 5.31 -19.86 -0.11 5.43 16 18 C -0.50 -24.79 8.90 23.32 0.21 -24.59 16 19 H 0.05 2.66 7.62 -2.91 -0.02 2.64 16 20 C 0.01 0.66 5.42 85.39 0.46 1.12 16 21 N -0.80 -39.79 13.64 21.90 0.30 -39.49 16 22 Si 1.10 40.78 24.90 68.60 1.71 42.49 16 23 H -0.24 -7.57 6.44 99.48 0.64 -6.93 16 24 H -0.25 -8.95 7.02 99.48 0.70 -8.25 16 25 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 26 H 0.14 3.69 6.12 -2.91 -0.02 3.68 16 27 H 0.14 2.57 6.13 -2.91 -0.02 2.56 16 28 H 0.16 1.39 6.39 -2.91 -0.02 1.37 16 29 H 0.42 2.33 6.85 -92.71 -0.63 1.69 16 30 H 0.41 3.77 8.93 -92.71 -0.83 2.94 16 31 H 0.13 3.08 7.64 -2.91 -0.02 3.05 16 32 H 0.14 2.93 6.11 -2.91 -0.02 2.91 16 33 H 0.14 3.48 6.07 -2.91 -0.02 3.46 16 34 H 0.12 4.45 4.37 -2.91 -0.01 4.44 16 35 H 0.28 14.18 8.72 -92.71 -0.81 13.37 16 Total: -1.00 -62.54 307.69 3.86 -58.68 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.37 Total: 17.26 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.49 Total: -25.30 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -0.90 Total: -74.85 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.07 Total: -18.28 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.71 Total: 42.49 kcal Total: -62.54 3.86 -58.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239870934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.705 kcal (2) G-P(sol) polarization free energy of solvation -62.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds