Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39105 * 120.56301 * 159.98230 * 3 2 1 5 5 C 1.39366 * 119.80516 * 180.29892 * 4 3 2 6 6 C 1.48039 * 119.49906 * 179.68621 * 5 4 3 7 7 C 1.39704 * 120.07118 * 359.74888 * 6 5 4 8 8 C 1.38040 * 120.14551 * 179.74226 * 7 6 5 9 9 C 1.38125 * 120.29787 * 0.50968 * 8 7 6 10 10 C 1.39668 * 120.14229 * 359.76454 * 9 8 7 11 11 C 1.47869 * 120.07507 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99793 * 0.02562 * 11 10 9 13 13 O 1.21551 * 119.99981 * 180.02562 * 11 10 9 14 14 C 1.39313 * 120.07573 * 180.02562 * 6 5 4 15 15 C 1.39960 * 121.00314 * 359.70367 * 5 4 3 16 16 C 1.36022 * 121.19653 * 359.97438 * 15 5 4 17 17 C 1.41035 * 120.10401 * 0.02562 * 16 15 5 18 18 C 1.40458 * 120.48930 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99885 * 208.73607 * 18 17 16 20 20 C 1.40307 * 119.99706 * 28.73166 * 18 17 16 21 21 N 1.30632 * 119.99407 * 197.54108 * 20 18 17 22 22 Si 1.86793 * 120.00378 * 17.54325 * 20 18 17 23 23 H 1.48511 * 109.46939 * 269.99800 * 22 20 18 24 24 H 1.48496 * 109.47169 * 29.99608 * 22 20 18 25 25 H 1.48498 * 109.47505 * 149.99675 * 22 20 18 26 26 H 1.07997 * 120.09773 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.92203 * 359.97438 * 7 6 5 28 28 H 1.07998 * 119.84692 * 180.25415 * 8 7 6 29 29 H 1.07997 * 119.92561 * 179.74875 * 9 8 7 30 30 H 0.97001 * 119.99964 * 359.97438 * 12 11 10 31 31 H 0.97005 * 119.99569 * 180.02562 * 12 11 10 32 32 H 1.08001 * 120.14310 * 0.02562 * 14 6 5 33 33 H 1.08005 * 119.40366 * 180.02562 * 15 5 4 34 34 H 1.08004 * 119.94717 * 179.97438 * 16 15 5 35 35 H 0.96994 * 120.00704 * 355.44987 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2748 1.1264 -0.4100 5 6 4.6683 1.1075 -0.4096 6 6 5.4137 2.3069 -0.8539 7 6 4.7216 3.4452 -1.2747 8 6 5.4150 4.5663 -1.6843 9 6 6.7963 4.5674 -1.6911 10 6 7.5006 3.4342 -1.2784 11 6 8.9792 3.4368 -1.2869 12 7 9.6488 4.5338 -1.6928 13 8 9.5908 2.4496 -0.9279 14 6 6.8068 2.3011 -0.8589 15 6 5.3738 -0.0282 0.0041 16 6 4.7241 -1.1489 0.4192 17 6 3.3143 -1.1830 0.4383 18 6 2.6351 -2.3357 0.8659 19 1 1.6542 -2.5610 0.4743 20 6 3.2311 -3.1945 1.8018 21 7 2.7838 -4.4132 1.9474 22 14 4.6640 -2.5953 2.8395 23 1 5.9395 -2.8823 2.1350 24 1 4.5383 -1.1320 3.0591 25 1 4.6536 -3.2951 4.1492 26 1 2.7452 2.0106 -0.7327 27 1 3.6416 3.4493 -1.2759 28 1 4.8751 5.4451 -2.0047 29 1 7.3327 5.4464 -2.0166 30 1 9.1607 5.3215 -1.9796 31 1 10.6189 4.5354 -1.6987 32 1 7.3466 1.4219 -0.5392 33 1 6.4537 -0.0144 -0.0056 34 1 5.2887 -2.0141 0.7338 35 1 1.9989 -4.7036 1.4571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239884363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = 19.096678 kcal Electronic energy + Delta-G solvation = -21107.858248 eV Core-core repulsion = 17841.580295 eV Total energy + Delta-G solvation = -3266.277952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03809 -38.67079 -37.49083 -35.37416 -34.48235 -33.85840 -31.98861 -31.20267 -30.20597 -29.19217 -25.47000 -24.33920 -22.45461 -22.15524 -21.14151 -20.15208 -18.60515 -18.35291 -17.35565 -16.46358 -16.19445 -15.11974 -14.96550 -14.74496 -14.63439 -14.33336 -14.00080 -13.63064 -13.42010 -13.20311 -12.83279 -12.68598 -12.51992 -12.16943 -11.92789 -11.55960 -11.43289 -11.18868 -11.03118 -10.79416 -10.44571 -10.19468 -10.05182 -9.84357 -9.78708 -9.49068 -8.98340 -8.84215 -8.11449 -7.93697 -7.46131 -5.01140 0.92854 1.35107 1.89644 2.39226 2.93148 3.03061 3.15552 3.33268 3.41991 3.66564 3.69151 3.80353 4.18146 4.34796 4.76433 4.87407 5.00336 5.08514 5.10615 5.33591 5.44215 5.61024 5.63139 5.81958 5.98554 6.17310 6.29211 6.39906 6.41479 6.51807 6.62348 6.63980 6.86641 6.95907 7.01779 7.19497 7.22059 7.25944 7.41780 7.49582 7.86268 7.96799 8.17106 8.19794 8.56640 9.45914 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.004417 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.745642 B = 6337.154722 C = 7728.324090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.296 3.704 3 C -0.176 4.176 4 C 0.012 3.988 5 C -0.214 4.214 6 C 0.014 3.986 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.132 4.132 11 C 0.564 3.436 12 N -0.855 5.855 13 O -0.541 6.541 14 C -0.080 4.080 15 C -0.024 4.024 16 C -0.241 4.241 17 C 0.132 3.868 18 C -0.458 4.458 19 H 0.087 0.913 20 C 0.039 3.961 21 N -0.770 5.770 22 Si 1.071 2.929 23 H -0.267 1.267 24 H -0.253 1.253 25 H -0.283 1.283 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.400 0.600 31 H 0.402 0.598 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 14.426 -4.715 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.015 4.015 3 C -0.181 4.181 4 C -0.009 4.009 5 C -0.215 4.215 6 C 0.014 3.986 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.143 4.143 10 C -0.135 4.135 11 C 0.351 3.649 12 N -0.419 5.419 13 O -0.418 6.418 14 C -0.099 4.099 15 C -0.043 4.043 16 C -0.259 4.259 17 C 0.126 3.874 18 C -0.484 4.484 19 H 0.105 0.895 20 C -0.186 4.186 21 N -0.388 5.388 22 Si 0.894 3.106 23 H -0.193 1.193 24 H -0.177 1.177 25 H -0.210 1.210 26 H 0.127 0.873 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.229 0.771 31 H 0.232 0.768 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.647 13.087 -3.325 16.595 hybrid contribution -0.714 0.739 -1.508 1.824 sum 8.933 13.826 -4.832 17.155 Atomic orbital electron populations 1.81052 1.12594 1.09972 1.13861 1.25666 0.92611 0.91724 0.91456 1.16727 0.83404 0.96435 1.21554 1.20698 0.92775 0.94946 0.92443 1.17688 0.91815 0.94449 1.17580 1.18847 0.92070 0.93185 0.94513 1.21433 1.00217 0.92721 0.99242 1.20896 0.93774 0.98271 1.00422 1.21031 0.94554 0.96891 1.01838 1.19671 0.91885 0.96185 1.05787 1.18445 0.87929 0.82523 0.75981 1.43769 1.10907 1.16930 1.70307 1.90811 1.69955 1.33543 1.47533 1.21352 0.93354 0.97477 0.97700 1.20526 0.98442 0.91847 0.93502 1.20771 0.93721 0.99304 1.12136 1.18571 0.91243 0.89772 0.87781 1.21024 1.04520 1.04018 1.18798 0.89537 1.27776 1.02619 0.91732 0.96484 1.70442 1.18538 1.14854 1.34975 0.83626 0.73616 0.78036 0.75286 1.19277 1.17715 1.20950 0.87333 0.85655 0.86016 0.86571 0.77052 0.76781 0.84621 0.87414 0.86494 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.50 18.54 41.84 0.78 -10.73 16 2 C 0.30 6.59 14.34 -22.48 -0.32 6.27 16 3 C -0.18 -3.75 5.93 -104.26 -0.62 -4.37 16 4 C 0.01 0.23 9.12 -38.84 -0.35 -0.13 16 5 C -0.21 -3.87 5.88 -104.81 -0.62 -4.49 16 6 C 0.01 0.22 5.87 -104.93 -0.62 -0.39 16 7 C -0.12 -1.58 9.41 -39.11 -0.37 -1.95 16 8 C -0.12 -1.28 10.02 -39.70 -0.40 -1.68 16 9 C -0.12 -1.32 9.54 -39.09 -0.37 -1.69 16 10 C -0.13 -1.76 5.87 -105.02 -0.62 -2.38 16 11 C 0.56 7.41 8.05 -12.32 -0.10 7.31 16 12 N -0.85 -6.90 8.82 30.54 0.27 -6.63 16 13 O -0.54 -9.28 17.18 5.32 0.09 -9.19 16 14 C -0.08 -1.24 8.96 -38.78 -0.35 -1.59 16 15 C -0.02 -0.46 9.29 -39.73 -0.37 -0.83 16 16 C -0.24 -4.98 7.20 -39.32 -0.28 -5.27 16 17 C 0.13 2.98 5.30 -104.61 -0.55 2.42 16 18 C -0.46 -10.99 8.90 -37.97 -0.34 -11.33 16 19 H 0.09 2.22 7.61 -52.49 -0.40 1.82 16 20 C 0.04 0.91 5.42 -17.28 -0.09 0.82 16 21 N -0.77 -18.40 13.64 55.57 0.76 -17.65 16 22 Si 1.07 21.28 24.90 -169.99 -4.23 17.05 16 23 H -0.27 -4.93 6.44 56.52 0.36 -4.57 16 24 H -0.25 -4.97 7.02 56.52 0.40 -4.57 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 26 H 0.11 1.72 6.12 -52.49 -0.32 1.40 16 27 H 0.13 1.54 6.13 -52.49 -0.32 1.22 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.12 0.80 6.39 -52.49 -0.34 0.46 16 30 H 0.40 2.06 6.85 -40.82 -0.28 1.78 16 31 H 0.40 2.63 8.93 -40.82 -0.36 2.26 16 32 H 0.14 2.19 5.71 -52.49 -0.30 1.89 16 33 H 0.11 1.80 6.08 -52.48 -0.32 1.48 16 34 H 0.12 2.36 4.39 -52.48 -0.23 2.13 16 35 H 0.30 6.90 8.72 -40.82 -0.36 6.54 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -27.91 307.78 -6.56 -34.46 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -2.49 Total: 7.31 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -6.37 Total: -19.26 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 1.80 Total: -35.00 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.23 Total: 17.05 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.91 -6.56 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239884363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.559 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds