Wall clock time and date at job start Tue Mar 31 2020 06:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21230 * 119.99787 * 2 1 4 4 C 1.47383 * 119.99947 * 180.27655 * 2 1 3 5 5 C 1.39693 * 119.61200 * 179.45294 * 4 2 1 6 6 C 1.38243 * 119.17358 * 179.75125 * 5 4 2 7 7 C 1.39819 * 118.39814 * 0.50578 * 6 5 4 8 8 C 1.48188 * 120.43179 * 179.70704 * 7 6 5 9 9 C 1.39883 * 119.54478 * 359.75199 * 8 7 6 10 10 C 1.37701 * 121.16513 * 179.75255 * 9 8 7 11 11 C 1.39581 * 120.19714 * 0.52162 * 10 9 8 12 12 C 1.43198 * 120.45131 * 179.72165 * 11 10 9 13 13 N 9.58078 * 148.46273 * 180.02562 * 4 1 2 14 14 C 1.46534 * 119.10449 * 359.74309 * 11 10 9 15 15 C 1.40840 * 120.55166 * 179.97438 * 14 11 10 16 16 H 1.08002 * 119.99971 * 24.51511 * 15 14 11 17 17 C 1.40245 * 119.99905 * 204.52128 * 15 14 11 18 18 N 1.30658 * 120.00171 * 17.42919 * 17 15 14 19 19 Si 1.86801 * 119.99890 * 197.43389 * 17 15 14 20 20 H 1.48497 * 109.47080 * 89.99832 * 19 17 15 21 21 H 1.48498 * 109.46802 * 210.00145 * 19 17 15 22 22 H 1.48504 * 109.46617 * 329.99644 * 19 17 15 23 23 C 1.38676 * 119.54572 * 180.02562 * 8 7 6 24 24 C 1.39847 * 119.14194 * 359.73385 * 7 6 5 25 25 N 1.31249 * 120.75471 * 0.02562 * 24 7 6 26 26 H 1.09001 * 109.46995 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47203 * 119.99961 * 1 2 3 28 28 H 1.09000 * 109.46961 * 240.00086 * 1 2 3 29 29 H 1.08007 * 120.41493 * 0.02562 * 5 4 2 30 30 H 1.07999 * 120.80319 * 180.26228 * 6 5 4 31 31 H 1.08001 * 119.41528 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.90437 * 180.24367 * 10 9 8 33 33 H 0.96995 * 119.99726 * 184.65108 * 18 17 15 34 34 H 1.08000 * 120.13927 * 0.02562 * 23 8 7 35 35 H 1.08006 * 119.62757 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2440 -1.2764 -0.0062 5 6 3.6408 -1.2669 -0.0177 6 6 4.3229 -2.4693 -0.0182 7 6 3.5812 -3.6546 -0.0178 8 6 4.2661 -4.9687 -0.0248 9 6 5.6640 -5.0178 -0.0371 10 6 6.3347 -6.2204 -0.0388 11 6 5.6231 -7.4212 -0.0392 12 6 6.3151 -8.6749 -0.0470 13 7 6.8641 -9.6694 -0.0489 14 6 4.1583 -7.3817 -0.0321 15 6 3.4099 -8.5748 -0.0328 16 1 3.8458 -9.4858 0.3499 17 6 2.0988 -8.5798 -0.5307 18 7 1.6855 -7.6019 -1.2923 19 14 0.9434 -9.9844 -0.1047 20 1 0.2044 -9.6570 1.1411 21 1 -0.0222 -10.1850 -1.2149 22 1 1.7297 -11.2278 0.0983 23 6 3.5123 -6.1327 -0.0249 24 6 2.1845 -3.5839 -0.0114 25 7 1.5712 -2.4235 -0.0062 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 4.1813 -0.3318 -0.0217 30 1 5.4026 -2.4927 -0.0227 31 1 6.2271 -4.0963 -0.0409 32 1 7.4146 -6.2346 -0.0444 33 1 0.7601 -7.5702 -1.5813 34 1 2.4336 -6.0802 -0.0203 35 1 1.6038 -4.4946 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242400536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:11 Heat of formation + Delta-G solvation = 23.100451 kcal Electronic energy + Delta-G solvation = -21090.237346 eV Core-core repulsion = 17824.133011 eV Total energy + Delta-G solvation = -3266.104336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55204 -40.04202 -39.14719 -37.03411 -35.95786 -34.21387 -33.06349 -31.74871 -31.43230 -29.74774 -27.66699 -25.78340 -24.84829 -22.88040 -22.54788 -21.26002 -19.60042 -18.83889 -18.19871 -17.56039 -17.21125 -16.50518 -16.23596 -15.78244 -15.62462 -15.33641 -14.96877 -14.72344 -14.55490 -14.45503 -14.41453 -14.14357 -13.46704 -13.36060 -13.29124 -13.10629 -13.02066 -12.92924 -12.80555 -12.65532 -12.19179 -11.84663 -11.55804 -11.26253 -11.16564 -10.92872 -10.42626 -10.39522 -9.53295 -9.00684 -8.76956 -6.53859 -0.80654 0.26539 0.42882 0.99270 1.28237 1.39284 1.49637 1.54606 2.04170 2.14751 2.34457 2.65936 2.80535 2.92905 3.44592 3.58985 3.67455 3.79318 3.95627 3.96596 4.15176 4.24894 4.41285 4.63434 4.71120 4.71652 4.75242 4.93006 5.00149 5.05288 5.14590 5.22078 5.24620 5.44749 5.59944 5.75295 5.90654 6.01234 6.12158 6.27272 6.39928 6.63970 6.74278 6.85135 6.96919 8.06993 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.004393 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.818199 B = 6371.584040 C = 8019.949465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.418 3.582 3 O -0.483 6.483 4 C 0.005 3.995 5 C -0.111 4.111 6 C -0.079 4.079 7 C -0.051 4.051 8 C -0.022 4.022 9 C -0.224 4.224 10 C -0.025 4.025 11 C -0.204 4.204 12 C 0.303 3.697 13 N -0.531 5.531 14 C 0.127 3.873 15 C -0.461 4.461 16 H 0.068 0.932 17 C 0.051 3.949 18 N -0.781 5.781 19 Si 0.972 3.028 20 H -0.251 1.251 21 H -0.261 1.261 22 H -0.272 1.272 23 C -0.152 4.152 24 C 0.094 3.906 25 N -0.444 5.444 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.303 0.697 34 H 0.130 0.870 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 12.147 1.648 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.297 3.703 3 O -0.359 6.359 4 C -0.130 4.130 5 C -0.131 4.131 6 C -0.104 4.104 7 C -0.054 4.054 8 C -0.024 4.024 9 C -0.243 4.243 10 C -0.046 4.046 11 C -0.210 4.210 12 C -0.005 4.005 13 N -0.211 5.211 14 C 0.122 3.878 15 C -0.488 4.488 16 H 0.086 0.914 17 C -0.171 4.171 18 N -0.404 5.404 19 Si 0.792 3.208 20 H -0.175 1.175 21 H -0.185 1.185 22 H -0.197 1.197 23 C -0.171 4.171 24 C -0.067 4.067 25 N -0.155 5.155 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.176 0.824 30 H 0.186 0.814 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.785 11.322 1.436 12.375 hybrid contribution 0.317 -0.866 0.008 0.922 sum -4.468 10.456 1.444 11.462 Atomic orbital electron populations 1.22088 0.90233 1.05239 1.06106 1.22704 0.93372 0.85294 0.68935 1.90517 1.73246 1.33988 1.38100 1.21985 0.92567 0.94290 1.04129 1.22381 0.94317 1.00013 0.96380 1.21985 1.02273 0.90163 0.96019 1.20345 0.94665 0.94042 0.96302 1.18600 0.93705 0.90547 0.99551 1.20557 0.92413 0.97358 1.13986 1.20701 0.98827 0.90379 0.94680 1.17255 0.92023 0.86154 1.25605 1.26055 0.91048 0.92703 0.90717 1.81011 1.12204 1.11764 1.16104 1.18612 0.88862 0.93699 0.86640 1.19873 0.98514 0.96234 1.34169 0.91369 1.26629 0.99381 0.99816 0.91251 1.69671 1.19288 1.31214 1.20264 0.85320 0.77666 0.77906 0.79872 1.17460 1.18489 1.19658 1.21465 0.99819 0.90316 1.05515 1.23124 0.91920 0.95668 0.96024 1.67578 1.40613 0.97720 1.09591 0.88878 0.87726 0.87604 0.82358 0.81381 0.84322 0.85320 0.88530 0.85222 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.79 71.24 0.70 -2.37 16 2 C 0.42 10.01 7.23 28.10 0.20 10.21 16 3 O -0.48 -13.53 17.04 -2.87 -0.05 -13.58 16 4 C 0.01 0.14 6.73 41.73 0.28 0.42 16 5 C -0.11 -2.73 9.62 22.62 0.22 -2.51 16 6 C -0.08 -2.00 9.51 22.65 0.22 -1.79 16 7 C -0.05 -1.59 5.90 -19.86 -0.12 -1.71 16 8 C -0.02 -0.80 5.86 -20.13 -0.12 -0.92 16 9 C -0.22 -7.35 9.38 22.54 0.21 -7.14 16 10 C -0.03 -0.91 9.74 22.47 0.22 -0.69 16 11 C -0.20 -8.84 5.95 -19.55 -0.12 -8.96 16 12 C 0.30 13.87 14.28 88.33 1.26 15.13 16 13 N -0.53 -25.19 18.54 19.00 0.35 -24.84 16 14 C 0.13 5.85 5.74 -19.90 -0.11 5.74 16 15 C -0.46 -21.95 8.58 23.39 0.20 -21.75 16 16 H 0.07 3.40 7.37 -2.91 -0.02 3.37 16 17 C 0.05 2.18 5.16 85.36 0.44 2.62 16 18 N -0.78 -33.43 10.94 21.88 0.24 -33.19 16 19 Si 0.97 33.68 29.60 68.60 2.03 35.71 16 20 H -0.25 -8.22 7.11 99.48 0.71 -7.52 16 21 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 22 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 23 C -0.15 -6.35 8.08 22.96 0.19 -6.16 16 24 C 0.09 2.91 10.58 85.17 0.90 3.81 16 25 N -0.44 -12.77 9.76 -184.32 -1.80 -14.57 16 26 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.16 3.31 7.63 -2.91 -0.02 3.29 16 30 H 0.17 3.31 6.24 -2.91 -0.02 3.29 16 31 H 0.14 3.49 6.15 -2.91 -0.02 3.47 16 32 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 33 H 0.30 11.46 8.30 -92.71 -0.77 10.69 16 34 H 0.13 5.41 4.26 -2.91 -0.01 5.40 16 35 H 0.16 5.22 6.16 -2.91 -0.02 5.21 16 Total: -1.00 -54.48 317.87 6.50 -47.98 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.16 Total: 18.56 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.57 Total: -16.06 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.21 Total: -72.60 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.05 Total: -13.58 kcal Atomic # 14 Polarization: 33.68 SS G_CDS: 2.03 Total: 35.71 kcal Total: -54.48 6.50 -47.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.077 kcal (2) G-P(sol) polarization free energy of solvation -54.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds