Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21248 * 120.00063 * 2 1 4 4 C 1.47327 * 120.00539 * 179.97438 * 2 1 3 5 5 C 1.39769 * 119.59637 * 179.97438 * 4 2 1 6 6 C 1.38144 * 119.19234 * 180.02562 * 5 4 2 7 7 C 1.40045 * 118.38512 * 0.02562 * 6 5 4 8 8 C 1.47851 * 120.44843 * 180.02562 * 7 6 5 9 9 C 1.40063 * 119.50360 * 359.97438 * 8 7 6 10 10 C 1.35983 * 121.18361 * 179.97438 * 9 8 7 11 11 C 1.41067 * 120.11334 * 0.02562 * 10 9 8 12 12 C 1.40404 * 120.48589 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00288 * 154.63215 * 12 11 10 14 14 C 1.40400 * 119.99672 * 334.63948 * 12 11 10 15 15 N 1.30578 * 119.99873 * 334.61190 * 14 12 11 16 16 Si 1.86799 * 120.00154 * 154.61694 * 14 12 11 17 17 H 1.48503 * 109.47293 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.46901 * 299.99766 * 16 14 12 19 19 H 1.48500 * 109.47233 * 59.99760 * 16 14 12 20 20 C 1.46670 * 119.03536 * 0.26946 * 11 10 9 21 21 C 1.43196 * 120.55906 * 179.70860 * 20 11 10 22 22 N 9.62892 * 97.56594 * 180.11490 * 2 1 3 23 23 C 1.39042 * 118.87760 * 359.44900 * 20 11 10 24 24 C 1.40051 * 119.11033 * 0.26765 * 7 6 5 25 25 N 1.31198 * 120.72851 * 359.43536 * 24 7 6 26 26 H 1.08996 * 109.47535 * 269.99915 * 1 2 3 27 27 H 1.08999 * 109.47180 * 30.00247 * 1 2 3 28 28 H 1.09005 * 109.47042 * 149.99974 * 1 2 3 29 29 H 1.08007 * 120.40283 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.80573 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.40579 * 0.02562 * 9 8 7 32 32 H 1.07996 * 119.94840 * 179.97438 * 10 9 8 33 33 H 0.97000 * 119.99930 * 354.18587 * 15 14 12 34 34 H 1.07993 * 120.09949 * 180.27005 * 23 20 11 35 35 H 1.08004 * 119.63634 * 179.70321 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2437 -1.2758 0.0006 5 6 3.6413 -1.2658 0.0000 6 6 4.3237 -2.4670 0.0000 7 6 3.5813 -3.6545 0.0000 8 6 4.2649 -4.9655 0.0006 9 6 5.6647 -5.0135 0.0006 10 6 6.3284 -6.2003 0.0016 11 6 5.6089 -7.4137 0.0022 12 6 6.2863 -8.6435 0.0027 13 1 5.8066 -9.5241 0.4038 14 6 7.5873 -8.7285 -0.5181 15 7 7.9878 -7.8708 -1.4175 16 14 8.7454 -10.0686 0.0756 17 1 10.0491 -9.9420 -0.6241 18 1 8.9533 -9.9303 1.5394 19 1 8.1543 -11.3990 -0.2169 20 6 4.1428 -7.3719 -0.0044 21 6 3.3800 -8.5837 -0.0103 22 7 2.7747 -9.5451 -0.0191 23 6 3.5063 -6.1357 0.0007 24 6 2.1826 -3.5835 -0.0057 25 7 1.5701 -2.4233 0.0001 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.1813 -0.3304 -0.0004 30 1 5.4035 -2.4897 0.0000 31 1 6.2269 -4.0913 0.0006 32 1 7.4083 -6.2141 0.0012 33 1 7.3623 -7.2285 -1.7876 34 1 2.4277 -6.0820 0.0004 35 1 1.6017 -4.4940 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242400747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = 25.425051 kcal Electronic energy + Delta-G solvation = -20859.451135 eV Core-core repulsion = 17593.447602 eV Total energy + Delta-G solvation = -3266.003533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28541 -38.82891 -37.95742 -35.47723 -34.94866 -32.70537 -31.70481 -30.49328 -30.21531 -28.82495 -26.11003 -24.03839 -23.56181 -22.16596 -21.02348 -20.12774 -18.78013 -17.49469 -17.00737 -16.27728 -15.42956 -15.11691 -14.91958 -14.79607 -14.43806 -14.24175 -13.88838 -13.50882 -13.27332 -13.09928 -13.06709 -12.66226 -12.25419 -12.15222 -12.10766 -12.00073 -11.87045 -11.59504 -11.37685 -11.08196 -10.73548 -10.42615 -10.18652 -10.01060 -9.82736 -9.57754 -9.19634 -9.12865 -8.29022 -7.97042 -7.65749 -5.11817 0.53664 1.49384 1.85994 2.05370 2.60183 2.85171 2.97363 3.06024 3.54549 3.60851 3.74021 3.96523 4.10504 4.21671 4.60089 4.95278 5.00255 5.07556 5.11339 5.20926 5.29325 5.42480 5.46074 5.51552 5.60950 5.86024 5.91154 5.98102 6.22237 6.31088 6.32992 6.48478 6.69783 6.78311 6.97517 7.08134 7.13976 7.28556 7.41473 7.42971 7.55732 7.95358 8.05489 8.11126 8.50618 9.28705 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.003361 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.200633 B = 8327.616233 C = 9252.293722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.417 3.583 3 O -0.470 6.470 4 C -0.022 4.022 5 C -0.091 4.091 6 C -0.128 4.128 7 C 0.014 3.986 8 C -0.227 4.227 9 C -0.032 4.032 10 C -0.215 4.215 11 C 0.124 3.876 12 C -0.440 4.440 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.741 5.741 16 Si 1.067 2.933 17 H -0.266 1.266 18 H -0.266 1.266 19 H -0.268 1.268 20 C -0.182 4.182 21 C 0.294 3.706 22 N -0.494 5.494 23 C 0.020 3.980 24 C 0.062 3.938 25 N -0.431 5.431 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.310 0.690 34 H 0.109 0.891 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 7.457 1.617 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.296 3.704 3 O -0.344 6.344 4 C -0.156 4.156 5 C -0.111 4.111 6 C -0.152 4.152 7 C 0.011 3.989 8 C -0.229 4.229 9 C -0.051 4.051 10 C -0.234 4.234 11 C 0.118 3.882 12 C -0.465 4.465 13 H 0.110 0.890 14 C -0.196 4.196 15 N -0.360 5.360 16 Si 0.887 3.113 17 H -0.190 1.190 18 H -0.191 1.191 19 H -0.193 1.193 20 C -0.187 4.187 21 C -0.016 4.016 22 N -0.173 5.173 23 C -0.001 4.001 24 C -0.102 4.102 25 N -0.142 5.142 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.542 6.111 1.389 6.763 hybrid contribution -0.396 0.840 0.128 0.938 sum -2.939 6.951 1.518 7.698 Atomic orbital electron populations 1.22066 0.93292 1.04683 1.04528 1.22257 0.91841 0.86408 0.69900 1.90510 1.72505 1.33717 1.37711 1.21310 0.91652 0.93597 1.09000 1.22053 0.94391 0.99151 0.95555 1.21570 1.00697 0.91158 1.01817 1.20147 0.93990 0.93788 0.90940 1.17566 0.92716 0.89562 1.23096 1.20460 0.92825 0.97065 0.94710 1.20789 0.99162 0.91532 1.11895 1.18538 0.88938 0.93122 0.87618 1.21132 0.99902 0.96732 1.28722 0.89011 1.27570 0.97928 1.00838 0.93281 1.70394 1.40784 1.10740 1.14058 0.83575 0.75735 0.74143 0.77799 1.18959 1.19056 1.19295 1.16660 0.91209 0.86067 1.24770 1.25658 0.91831 0.92597 0.91543 1.81069 1.10978 1.10879 1.14354 1.20716 0.97571 0.90526 0.91245 1.22837 0.91557 0.95162 1.00602 1.67387 1.40749 0.97866 1.08189 0.88808 0.90175 0.88706 0.84621 0.84495 0.87949 0.86506 0.87529 0.87297 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 10.01 36.00 0.36 -1.57 16 2 C 0.42 5.74 7.23 -30.62 -0.22 5.52 16 3 O -0.47 -7.45 17.05 5.59 0.10 -7.35 16 4 C -0.02 -0.33 6.73 -83.07 -0.56 -0.89 16 5 C -0.09 -1.32 9.61 -39.04 -0.38 -1.70 16 6 C -0.13 -1.87 9.51 -38.94 -0.37 -2.24 16 7 C 0.01 0.22 5.90 -104.61 -0.62 -0.40 16 8 C -0.23 -3.96 5.88 -104.82 -0.62 -4.58 16 9 C -0.03 -0.56 9.31 -39.71 -0.37 -0.93 16 10 C -0.21 -4.24 7.88 -39.32 -0.31 -4.55 16 11 C 0.12 2.64 5.47 -104.61 -0.57 2.07 16 12 C -0.44 -9.57 8.49 -37.95 -0.32 -9.89 16 13 H 0.09 2.03 7.45 -52.49 -0.39 1.64 16 14 C 0.03 0.66 4.95 -17.27 -0.09 0.57 16 15 N -0.74 -15.75 12.30 55.57 0.68 -15.07 16 16 Si 1.07 17.59 30.01 -169.99 -5.10 12.49 16 17 H -0.27 -4.35 7.11 56.52 0.40 -3.95 16 18 H -0.27 -4.22 7.11 56.52 0.40 -3.82 16 19 H -0.27 -4.34 7.11 56.52 0.40 -3.94 16 20 C -0.18 -3.70 5.93 -104.27 -0.62 -4.32 16 21 C 0.29 6.27 14.30 -22.47 -0.32 5.95 16 22 N -0.49 -10.98 18.54 41.84 0.78 -10.20 16 23 C 0.02 0.37 9.13 -38.83 -0.35 0.01 16 24 C 0.06 0.93 10.58 -17.14 -0.18 0.75 16 25 N -0.43 -6.52 9.41 -9.56 -0.09 -6.60 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.96 7.60 -51.93 -0.39 0.56 16 29 H 0.14 1.78 7.63 -52.48 -0.40 1.38 16 30 H 0.14 1.77 6.23 -52.49 -0.33 1.44 16 31 H 0.10 1.57 6.14 -52.48 -0.32 1.24 16 32 H 0.12 2.34 6.48 -52.49 -0.34 2.00 16 33 H 0.31 6.67 6.68 -40.82 -0.27 6.40 16 34 H 0.11 1.69 6.15 -52.49 -0.32 1.37 16 35 H 0.16 2.12 6.16 -52.48 -0.32 1.80 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -24.19 316.34 -7.14 -31.32 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.73 Total: 6.85 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -5.53 Total: -16.20 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 1.37 Total: -31.88 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.10 Total: -7.35 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.10 Total: 12.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -24.19 -7.14 -31.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.749 kcal (2) G-P(sol) polarization free energy of solvation -24.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds