Wall clock time and date at job start Tue Mar 31 2020 06:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21248 * 120.00063 * 2 1 4 4 C 1.47327 * 120.00539 * 179.97438 * 2 1 3 5 5 C 1.39769 * 119.59637 * 179.97438 * 4 2 1 6 6 C 1.38144 * 119.19234 * 180.02562 * 5 4 2 7 7 C 1.40045 * 118.38512 * 0.02562 * 6 5 4 8 8 C 1.47851 * 120.44843 * 180.02562 * 7 6 5 9 9 C 1.40063 * 119.50360 * 359.97438 * 8 7 6 10 10 C 1.35983 * 121.18361 * 179.97438 * 9 8 7 11 11 C 1.41067 * 120.11334 * 0.02562 * 10 9 8 12 12 C 1.40404 * 120.48589 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00288 * 154.63215 * 12 11 10 14 14 C 1.40400 * 119.99672 * 334.63948 * 12 11 10 15 15 N 1.30578 * 119.99873 * 334.61190 * 14 12 11 16 16 Si 1.86799 * 120.00154 * 154.61694 * 14 12 11 17 17 H 1.48503 * 109.47293 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.46901 * 299.99766 * 16 14 12 19 19 H 1.48500 * 109.47233 * 59.99760 * 16 14 12 20 20 C 1.46670 * 119.03536 * 0.26946 * 11 10 9 21 21 C 1.43196 * 120.55906 * 179.70860 * 20 11 10 22 22 N 9.62892 * 97.56594 * 180.11490 * 2 1 3 23 23 C 1.39042 * 118.87760 * 359.44900 * 20 11 10 24 24 C 1.40051 * 119.11033 * 0.26765 * 7 6 5 25 25 N 1.31198 * 120.72851 * 359.43536 * 24 7 6 26 26 H 1.08996 * 109.47535 * 269.99915 * 1 2 3 27 27 H 1.08999 * 109.47180 * 30.00247 * 1 2 3 28 28 H 1.09005 * 109.47042 * 149.99974 * 1 2 3 29 29 H 1.08007 * 120.40283 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.80573 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.40579 * 0.02562 * 9 8 7 32 32 H 1.07996 * 119.94840 * 179.97438 * 10 9 8 33 33 H 0.97000 * 119.99930 * 354.18587 * 15 14 12 34 34 H 1.07993 * 120.09949 * 180.27005 * 23 20 11 35 35 H 1.08004 * 119.63634 * 179.70321 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2437 -1.2758 0.0006 5 6 3.6413 -1.2658 0.0000 6 6 4.3237 -2.4670 0.0000 7 6 3.5813 -3.6545 0.0000 8 6 4.2649 -4.9655 0.0006 9 6 5.6647 -5.0135 0.0006 10 6 6.3284 -6.2003 0.0016 11 6 5.6089 -7.4137 0.0022 12 6 6.2863 -8.6435 0.0027 13 1 5.8066 -9.5241 0.4038 14 6 7.5873 -8.7285 -0.5181 15 7 7.9878 -7.8708 -1.4175 16 14 8.7454 -10.0686 0.0756 17 1 10.0491 -9.9420 -0.6241 18 1 8.9533 -9.9303 1.5394 19 1 8.1543 -11.3990 -0.2169 20 6 4.1428 -7.3719 -0.0044 21 6 3.3800 -8.5837 -0.0103 22 7 2.7747 -9.5451 -0.0191 23 6 3.5063 -6.1357 0.0007 24 6 2.1826 -3.5835 -0.0057 25 7 1.5701 -2.4233 0.0001 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.1813 -0.3304 -0.0004 30 1 5.4035 -2.4897 0.0000 31 1 6.2269 -4.0913 0.0006 32 1 7.4083 -6.2141 0.0012 33 1 7.3623 -7.2285 -1.7876 34 1 2.4277 -6.0820 0.0004 35 1 1.6017 -4.4940 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242400747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:15 Heat of formation + Delta-G solvation = 15.841041 kcal Electronic energy + Delta-G solvation = -20859.866729 eV Core-core repulsion = 17593.447602 eV Total energy + Delta-G solvation = -3266.419127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48772 -40.11277 -39.33146 -37.14610 -36.41103 -34.00338 -32.95361 -31.90668 -31.42047 -30.08232 -27.51839 -25.35454 -24.86121 -23.58836 -22.41911 -21.27533 -20.30491 -18.92391 -18.19884 -17.50880 -16.83614 -16.27550 -16.22530 -16.19908 -15.70587 -15.39762 -15.20956 -14.84992 -14.64307 -14.51972 -14.40395 -14.18398 -13.67008 -13.53036 -13.43387 -13.07635 -13.02337 -12.96145 -12.79107 -12.45706 -12.02172 -11.86226 -11.64669 -11.23386 -11.16261 -10.90031 -10.45098 -10.36772 -9.80612 -9.50542 -9.11627 -6.70550 -0.67778 0.29535 0.32761 0.72385 1.32441 1.49972 1.65968 1.78667 1.93020 2.19837 2.25286 2.53601 2.87285 2.93527 3.37972 3.46548 3.52555 3.86971 3.93096 4.03059 4.14988 4.16986 4.26668 4.51467 4.64039 4.68977 4.76200 4.82444 4.83520 5.04018 5.15015 5.17647 5.23739 5.41109 5.47646 5.56980 5.72689 5.79677 5.92908 6.05632 6.32726 6.40623 6.52860 6.84729 6.90374 7.71803 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.003361 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.200633 B = 8327.616233 C = 9252.293722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.417 3.583 3 O -0.492 6.492 4 C -0.021 4.021 5 C -0.100 4.100 6 C -0.116 4.116 7 C -0.006 4.006 8 C -0.212 4.212 9 C -0.026 4.026 10 C -0.227 4.227 11 C 0.113 3.887 12 C -0.483 4.483 13 H 0.075 0.925 14 C 0.011 3.989 15 N -0.762 5.762 16 Si 1.108 2.892 17 H -0.262 1.262 18 H -0.256 1.256 19 H -0.266 1.266 20 C -0.204 4.204 21 C 0.301 3.699 22 N -0.520 5.520 23 C 0.020 3.980 24 C 0.065 3.935 25 N -0.435 5.435 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.300 0.700 34 H 0.134 0.866 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 9.685 1.983 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.297 3.703 3 O -0.368 6.368 4 C -0.156 4.156 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.008 4.008 8 C -0.214 4.214 9 C -0.045 4.045 10 C -0.246 4.246 11 C 0.107 3.893 12 C -0.508 4.508 13 H 0.093 0.907 14 C -0.213 4.213 15 N -0.381 5.381 16 Si 0.925 3.075 17 H -0.186 1.186 18 H -0.180 1.180 19 H -0.190 1.190 20 C -0.209 4.209 21 C -0.008 4.008 22 N -0.199 5.199 23 C -0.001 4.001 24 C -0.097 4.097 25 N -0.146 5.146 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.460 8.344 1.757 9.202 hybrid contribution -0.353 0.555 0.030 0.659 sum -3.813 8.899 1.787 9.845 Atomic orbital electron populations 1.22083 0.90375 1.05621 1.05855 1.22695 0.93352 0.85444 0.68802 1.90512 1.73279 1.34254 1.38776 1.21767 0.92246 0.94249 1.07298 1.22269 0.94477 0.99708 0.95510 1.21821 1.01712 0.90705 0.99812 1.20108 0.94471 0.93281 0.92911 1.17767 0.92663 0.90235 1.20710 1.20763 0.93278 0.97450 0.93029 1.20769 0.98944 0.91837 1.13049 1.18802 0.89566 0.93686 0.87227 1.21111 1.01259 0.96598 1.31831 0.90669 1.28540 0.98626 1.01672 0.92417 1.70477 1.40492 1.11883 1.15258 0.83077 0.74318 0.72229 0.77924 1.18573 1.18032 1.19032 1.16839 0.91037 0.86616 1.26435 1.25885 0.91386 0.92605 0.90925 1.81047 1.11913 1.11318 1.15616 1.20960 0.98949 0.89697 0.90447 1.23128 0.91500 0.95855 0.99259 1.67470 1.40633 0.97838 1.08646 0.87078 0.88645 0.88366 0.83292 0.82676 0.85157 0.87193 0.88680 0.84836 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 10.01 71.23 0.71 -2.40 16 2 C 0.42 10.24 7.23 28.08 0.20 10.44 16 3 O -0.49 -14.36 17.05 -2.93 -0.05 -14.41 16 4 C -0.02 -0.58 6.73 41.72 0.28 -0.29 16 5 C -0.10 -2.56 9.61 22.62 0.22 -2.35 16 6 C -0.12 -2.99 9.51 22.69 0.22 -2.78 16 7 C -0.01 -0.16 5.90 -19.85 -0.12 -0.28 16 8 C -0.21 -6.93 5.88 -19.99 -0.12 -7.05 16 9 C -0.03 -0.89 9.31 22.19 0.21 -0.69 16 10 C -0.23 -9.01 7.88 22.44 0.18 -8.83 16 11 C 0.11 4.94 5.47 -19.85 -0.11 4.83 16 12 C -0.48 -21.94 8.49 23.32 0.20 -21.74 16 13 H 0.08 3.54 7.45 -2.91 -0.02 3.52 16 14 C 0.01 0.47 4.95 85.41 0.42 0.90 16 15 N -0.76 -33.41 12.30 21.90 0.27 -33.15 16 16 Si 1.11 36.22 30.01 68.60 2.06 38.28 16 17 H -0.26 -8.30 7.11 99.48 0.71 -7.59 16 18 H -0.26 -7.88 7.11 99.48 0.71 -7.17 16 19 H -0.27 -8.46 7.11 99.48 0.71 -7.75 16 20 C -0.20 -8.37 5.93 -19.64 -0.12 -8.49 16 21 C 0.30 13.09 14.30 88.33 1.26 14.35 16 22 N -0.52 -23.52 18.54 19.00 0.35 -23.17 16 23 C 0.02 0.70 9.13 22.76 0.21 0.90 16 24 C 0.06 1.76 10.58 85.23 0.90 2.67 16 25 N -0.44 -11.76 9.41 -184.15 -1.73 -13.49 16 26 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.64 7.60 -2.38 -0.02 1.63 16 29 H 0.15 3.45 7.63 -2.91 -0.02 3.43 16 30 H 0.16 3.40 6.23 -2.91 -0.02 3.39 16 31 H 0.13 3.61 6.14 -2.91 -0.02 3.59 16 32 H 0.11 4.49 6.48 -2.91 -0.02 4.47 16 33 H 0.30 13.40 6.68 -92.71 -0.62 12.79 16 34 H 0.13 3.86 6.15 -2.91 -0.02 3.84 16 35 H 0.17 4.09 6.16 -2.91 -0.02 4.07 16 Total: -1.00 -52.39 316.34 6.76 -45.63 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.31 Total: 21.10 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.55 Total: -20.80 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.11 Total: -69.80 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.05 Total: -14.41 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.06 Total: 38.28 kcal Total: -52.39 6.76 -45.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.473 kcal (2) G-P(sol) polarization free energy of solvation -52.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds