Wall clock time and date at job start Tue Mar 31 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21211 * 120.00079 * 2 1 4 4 C 1.47563 * 119.99830 * 179.97438 * 2 1 3 5 5 C 1.39355 * 119.68654 * 179.97438 * 4 2 1 6 6 C 1.39722 * 118.89414 * 179.97438 * 5 4 2 7 7 C 1.48331 * 120.87146 * 180.02562 * 6 5 4 8 8 C 1.39811 * 119.53485 * 0.02562 * 7 6 5 9 9 C 1.37731 * 121.17629 * 180.02562 * 8 7 6 10 10 C 1.39567 * 120.18270 * 359.97407 * 9 8 7 11 11 C 1.43197 * 120.45653 * 180.02562 * 10 9 8 12 12 N 9.99920 * 165.17841 * 179.91006 * 2 1 3 13 13 C 1.46527 * 119.08948 * 0.02562 * 10 9 8 14 14 C 1.40832 * 120.55481 * 179.97438 * 13 10 9 15 15 H 1.08001 * 120.00287 * 24.38834 * 14 13 10 16 16 C 1.40244 * 120.00208 * 204.39587 * 14 13 10 17 17 N 1.30654 * 119.99756 * 17.30406 * 16 14 13 18 18 Si 1.86797 * 120.00319 * 197.31309 * 16 14 13 19 19 H 1.48505 * 109.46832 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47503 * 119.99110 * 18 16 14 21 21 H 1.48496 * 109.47314 * 239.99829 * 18 16 14 22 22 C 1.38588 * 119.53951 * 179.72376 * 7 6 5 23 23 C 1.39756 * 118.26219 * 0.02562 * 6 5 4 24 24 C 1.38424 * 119.24753 * 359.97438 * 23 6 5 25 25 N 1.31495 * 121.05985 * 0.02562 * 24 23 6 26 26 H 1.09008 * 109.47273 * 240.00406 * 1 2 3 27 27 H 1.08998 * 109.47351 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47322 * 119.99966 * 1 2 3 29 29 H 1.08007 * 120.55015 * 0.25212 * 5 4 2 30 30 H 1.08003 * 119.41424 * 359.97438 * 8 7 6 31 31 H 1.07993 * 119.91179 * 180.02562 * 9 8 7 32 32 H 0.97004 * 120.00385 * 184.51394 * 17 16 14 33 33 H 1.07999 * 120.13041 * 0.02562 * 22 7 6 34 34 H 1.07994 * 120.37460 * 180.02562 * 23 6 5 35 35 H 1.08002 * 119.47080 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0497 0.0000 4 6 2.2448 -1.2780 0.0006 5 6 3.6383 -1.2704 0.0000 6 6 4.3201 -2.4900 0.0011 7 6 5.8028 -2.5331 0.0012 8 6 6.5270 -1.3372 0.0006 9 6 7.9043 -1.3378 0.0001 10 6 8.6055 -2.5445 0.0007 11 6 10.0375 -2.5520 0.0007 12 7 11.1735 -2.5579 0.0040 13 6 7.8563 -3.8038 0.0013 14 6 8.5324 -5.0391 0.0013 15 1 9.5391 -5.1038 0.3871 16 6 7.8987 -6.1855 -0.4999 17 7 6.8445 -6.0683 -1.2628 18 14 8.5615 -7.8798 -0.0765 19 1 9.7550 -7.7405 0.7962 20 1 7.5153 -8.6570 0.6354 21 1 8.9416 -8.5888 -1.3247 22 6 6.4507 -3.7582 0.0081 23 6 3.5685 -3.6682 0.0022 24 6 2.1865 -3.5889 0.0026 25 7 1.5738 -2.4255 0.0016 26 1 -0.3634 -0.5138 0.8901 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 4.1822 -0.3373 0.0033 30 1 5.9971 -0.3961 -0.0002 31 1 8.4432 -0.4019 0.0002 32 1 6.3674 -6.8604 -1.5559 33 1 5.8785 -4.6741 0.0130 34 1 4.0604 -4.6297 0.0035 35 1 1.6022 -4.4972 0.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242610364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:13 Heat of formation + Delta-G solvation = 34.048474 kcal Electronic energy + Delta-G solvation = -21173.051367 eV Core-core repulsion = 17907.421773 eV Total energy + Delta-G solvation = -3265.629594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38138 -38.77283 -37.75679 -35.33310 -34.43064 -32.99425 -31.60376 -30.20210 -29.87698 -28.98572 -26.06297 -24.57184 -23.50779 -21.98196 -21.02993 -19.65866 -18.01887 -17.35050 -16.80415 -16.23112 -15.71145 -15.40235 -15.18366 -14.53945 -14.49856 -13.94541 -13.76088 -13.49272 -13.29199 -13.00165 -12.79530 -12.43216 -12.20805 -12.17191 -12.00057 -11.83301 -11.62809 -11.45615 -11.27113 -11.23755 -10.75031 -10.28103 -10.17838 -9.86547 -9.82635 -9.46827 -9.31887 -9.04505 -7.94614 -7.55967 -7.26258 -4.87005 0.60547 1.07934 2.07139 2.46283 2.52717 2.84645 2.90331 2.95543 3.59960 3.80819 3.82940 3.83557 4.25171 4.32817 4.52729 4.93755 5.02786 5.21224 5.24888 5.28510 5.33740 5.39784 5.42487 5.60243 5.76185 5.86880 5.96063 6.12390 6.24312 6.33179 6.56111 6.66398 6.75686 6.83483 7.01723 7.29366 7.33067 7.48375 7.56302 7.68830 7.98380 8.02586 8.26198 8.35747 8.71389 9.60034 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.004440 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.555595 B = 6304.513938 C = 7840.144402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.414 3.586 3 O -0.454 6.454 4 C 0.031 3.969 5 C -0.110 4.110 6 C 0.017 3.983 7 C -0.033 4.033 8 C -0.232 4.232 9 C -0.026 4.026 10 C -0.179 4.179 11 C 0.298 3.702 12 N -0.505 5.505 13 C 0.146 3.854 14 C -0.424 4.424 15 H 0.088 0.912 16 C 0.077 3.923 17 N -0.765 5.765 18 Si 0.914 3.086 19 H -0.255 1.255 20 H -0.265 1.265 21 H -0.268 1.268 22 C -0.130 4.130 23 C -0.137 4.137 24 C 0.093 3.907 25 N -0.461 5.461 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.292 0.708 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 0.786 1.585 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.290 3.710 3 O -0.327 6.327 4 C -0.104 4.104 5 C -0.131 4.131 6 C 0.009 3.991 7 C -0.034 4.034 8 C -0.252 4.252 9 C -0.047 4.047 10 C -0.185 4.185 11 C -0.012 4.012 12 N -0.184 5.184 13 C 0.140 3.860 14 C -0.451 4.451 15 H 0.106 0.894 16 C -0.146 4.146 17 N -0.387 5.387 18 Si 0.736 3.264 19 H -0.178 1.178 20 H -0.189 1.189 21 H -0.193 1.193 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.067 4.067 25 N -0.173 5.173 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.164 0.836 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.800 1.286 1.389 11.951 hybrid contribution 0.685 -1.027 0.013 1.235 sum -11.115 0.258 1.401 11.206 Atomic orbital electron populations 1.22054 0.92818 1.03971 1.05178 1.22399 0.91994 0.86313 0.70277 1.90540 1.72496 1.33475 1.36229 1.21486 0.91575 0.93853 1.03487 1.22435 0.93964 0.99591 0.97078 1.19517 0.94347 0.92111 0.93083 1.18368 0.88657 0.94580 1.01819 1.20156 0.93183 0.95880 1.15972 1.20397 0.93514 0.95073 0.95736 1.16995 0.83350 0.94257 1.23887 1.25762 0.92702 0.91399 0.91314 1.81034 1.12710 1.09842 1.14786 1.18344 0.91053 0.90204 0.86356 1.19847 1.01698 0.91832 1.31772 0.89376 1.26104 0.94354 1.02460 0.91701 1.69704 1.15107 1.33581 1.20332 0.86122 0.80609 0.79789 0.79832 1.17835 1.18931 1.19325 1.21440 0.93987 0.95733 1.03814 1.22684 0.94942 1.00027 0.98059 1.22650 0.92085 0.95288 0.96684 1.67489 1.40882 0.97858 1.11117 0.88658 0.90324 0.88645 0.83616 0.87907 0.87848 0.89678 0.84896 0.83491 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.80 36.00 0.35 -1.38 16 2 C 0.41 5.57 7.24 -30.51 -0.22 5.35 16 3 O -0.45 -7.26 17.05 5.62 0.10 -7.16 16 4 C 0.03 0.45 6.73 -83.17 -0.56 -0.11 16 5 C -0.11 -1.78 9.01 -38.61 -0.35 -2.13 16 6 C 0.02 0.29 5.91 -104.62 -0.62 -0.33 16 7 C -0.03 -0.64 5.86 -105.03 -0.62 -1.26 16 8 C -0.23 -4.41 9.39 -39.18 -0.37 -4.78 16 9 C -0.03 -0.52 9.74 -39.27 -0.38 -0.90 16 10 C -0.18 -3.94 5.94 -104.14 -0.62 -4.56 16 11 C 0.30 6.80 14.28 -22.47 -0.32 6.48 16 12 N -0.50 -11.90 18.54 41.84 0.78 -11.12 16 13 C 0.15 3.34 5.73 -104.67 -0.60 2.74 16 14 C -0.42 -9.82 8.58 -37.85 -0.32 -10.14 16 15 H 0.09 2.09 7.37 -52.49 -0.39 1.70 16 16 C 0.08 1.62 5.16 -17.30 -0.09 1.53 16 17 N -0.76 -16.16 10.95 55.56 0.61 -15.55 16 18 Si 0.91 16.20 29.60 -169.99 -5.03 11.17 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 21 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 22 C -0.13 -2.75 8.08 -38.55 -0.31 -3.07 16 23 C -0.14 -2.06 9.49 -38.95 -0.37 -2.43 16 24 C 0.09 1.20 11.17 -17.63 -0.20 1.01 16 25 N -0.46 -6.40 9.77 -9.96 -0.10 -6.50 16 26 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.15 2.32 5.85 -52.48 -0.31 2.01 16 30 H 0.10 1.74 6.18 -52.48 -0.32 1.42 16 31 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.29 5.46 8.30 -40.82 -0.34 5.12 16 33 H 0.13 2.74 4.33 -52.49 -0.23 2.51 16 34 H 0.15 2.14 6.27 -52.49 -0.33 1.81 16 35 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -25.74 318.15 -7.27 -33.01 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -2.82 Total: 5.34 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -5.59 Total: -13.98 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 1.29 Total: -33.17 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.10 Total: -7.16 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.17 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -25.74 -7.27 -33.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242610364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.054 kcal (2) G-P(sol) polarization free energy of solvation -25.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds