Wall clock time and date at job start Tue Mar 31 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21211 * 120.00079 * 2 1 4 4 C 1.47563 * 119.99830 * 179.97438 * 2 1 3 5 5 C 1.39355 * 119.68654 * 179.97438 * 4 2 1 6 6 C 1.39722 * 118.89414 * 179.97438 * 5 4 2 7 7 C 1.48331 * 120.87146 * 180.02562 * 6 5 4 8 8 C 1.39811 * 119.53485 * 0.02562 * 7 6 5 9 9 C 1.37731 * 121.17629 * 180.02562 * 8 7 6 10 10 C 1.39567 * 120.18270 * 359.97407 * 9 8 7 11 11 C 1.43197 * 120.45653 * 180.02562 * 10 9 8 12 12 N 9.99920 * 165.17841 * 179.91006 * 2 1 3 13 13 C 1.46527 * 119.08948 * 0.02562 * 10 9 8 14 14 C 1.40832 * 120.55481 * 179.97438 * 13 10 9 15 15 H 1.08001 * 120.00287 * 24.38834 * 14 13 10 16 16 C 1.40244 * 120.00208 * 204.39587 * 14 13 10 17 17 N 1.30654 * 119.99756 * 17.30406 * 16 14 13 18 18 Si 1.86797 * 120.00319 * 197.31309 * 16 14 13 19 19 H 1.48505 * 109.46832 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47503 * 119.99110 * 18 16 14 21 21 H 1.48496 * 109.47314 * 239.99829 * 18 16 14 22 22 C 1.38588 * 119.53951 * 179.72376 * 7 6 5 23 23 C 1.39756 * 118.26219 * 0.02562 * 6 5 4 24 24 C 1.38424 * 119.24753 * 359.97438 * 23 6 5 25 25 N 1.31495 * 121.05985 * 0.02562 * 24 23 6 26 26 H 1.09008 * 109.47273 * 240.00406 * 1 2 3 27 27 H 1.08998 * 109.47351 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47322 * 119.99966 * 1 2 3 29 29 H 1.08007 * 120.55015 * 0.25212 * 5 4 2 30 30 H 1.08003 * 119.41424 * 359.97438 * 8 7 6 31 31 H 1.07993 * 119.91179 * 180.02562 * 9 8 7 32 32 H 0.97004 * 120.00385 * 184.51394 * 17 16 14 33 33 H 1.07999 * 120.13041 * 0.02562 * 22 7 6 34 34 H 1.07994 * 120.37460 * 180.02562 * 23 6 5 35 35 H 1.08002 * 119.47080 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0497 0.0000 4 6 2.2448 -1.2780 0.0006 5 6 3.6383 -1.2704 0.0000 6 6 4.3201 -2.4900 0.0011 7 6 5.8028 -2.5331 0.0012 8 6 6.5270 -1.3372 0.0006 9 6 7.9043 -1.3378 0.0001 10 6 8.6055 -2.5445 0.0007 11 6 10.0375 -2.5520 0.0007 12 7 11.1735 -2.5579 0.0040 13 6 7.8563 -3.8038 0.0013 14 6 8.5324 -5.0391 0.0013 15 1 9.5391 -5.1038 0.3871 16 6 7.8987 -6.1855 -0.4999 17 7 6.8445 -6.0683 -1.2628 18 14 8.5615 -7.8798 -0.0765 19 1 9.7550 -7.7405 0.7962 20 1 7.5153 -8.6570 0.6354 21 1 8.9416 -8.5888 -1.3247 22 6 6.4507 -3.7582 0.0081 23 6 3.5685 -3.6682 0.0022 24 6 2.1865 -3.5889 0.0026 25 7 1.5738 -2.4255 0.0016 26 1 -0.3634 -0.5138 0.8901 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 4.1822 -0.3373 0.0033 30 1 5.9971 -0.3961 -0.0002 31 1 8.4432 -0.4019 0.0002 32 1 6.3674 -6.8604 -1.5559 33 1 5.8785 -4.6741 0.0130 34 1 4.0604 -4.6297 0.0035 35 1 1.6022 -4.4972 0.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242610364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:13 Heat of formation + Delta-G solvation = 22.699019 kcal Electronic energy + Delta-G solvation = -21173.543516 eV Core-core repulsion = 17907.421773 eV Total energy + Delta-G solvation = -3266.121743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54699 -39.99215 -39.23962 -37.09245 -36.01067 -34.38464 -32.75953 -31.73248 -31.03871 -30.27338 -27.67595 -25.84315 -24.78255 -23.34555 -22.56295 -20.86760 -19.62268 -18.88539 -18.10749 -17.40976 -17.05295 -16.77974 -16.23437 -15.90799 -15.72186 -15.23401 -15.07605 -14.90202 -14.71001 -14.49919 -14.47042 -13.75508 -13.61301 -13.48657 -13.18612 -13.11593 -12.99574 -12.96159 -12.77881 -12.71960 -12.20315 -11.86456 -11.47607 -11.31843 -11.22728 -10.93299 -10.46259 -10.19023 -9.58188 -9.12004 -8.84272 -6.57391 -0.59229 -0.24808 0.70035 0.94168 1.28422 1.38537 1.49374 1.52545 2.00314 2.14209 2.32277 2.62622 2.79254 2.93210 3.41433 3.57173 3.63666 3.74075 4.00804 4.05105 4.11424 4.28762 4.45492 4.52453 4.67584 4.74625 4.84231 4.89496 4.92965 5.00579 5.11226 5.21659 5.28305 5.42114 5.62652 5.70209 5.85569 5.98063 6.07607 6.30091 6.35931 6.59833 6.70068 6.85098 6.92748 8.05019 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.004440 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.555595 B = 6304.513938 C = 7840.144402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.414 3.586 3 O -0.486 6.486 4 C 0.025 3.975 5 C -0.120 4.120 6 C -0.007 4.007 7 C -0.028 4.028 8 C -0.232 4.232 9 C -0.025 4.025 10 C -0.205 4.205 11 C 0.304 3.696 12 N -0.528 5.528 13 C 0.127 3.873 14 C -0.458 4.458 15 H 0.069 0.931 16 C 0.050 3.950 17 N -0.780 5.780 18 Si 0.974 3.026 19 H -0.270 1.270 20 H -0.245 1.245 21 H -0.265 1.265 22 C -0.147 4.147 23 C -0.137 4.137 24 C 0.103 3.897 25 N -0.451 5.451 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.305 0.695 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.734 0.170 1.569 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.361 6.361 4 C -0.110 4.110 5 C -0.140 4.140 6 C -0.015 4.015 7 C -0.029 4.029 8 C -0.251 4.251 9 C -0.045 4.045 10 C -0.212 4.212 11 C -0.005 4.005 12 N -0.208 5.208 13 C 0.122 3.878 14 C -0.485 4.485 15 H 0.087 0.913 16 C -0.171 4.171 17 N -0.403 5.403 18 Si 0.794 3.206 19 H -0.195 1.195 20 H -0.169 1.169 21 H -0.189 1.189 22 C -0.167 4.167 23 C -0.156 4.156 24 C -0.057 4.057 25 N -0.163 5.163 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.159 0.841 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.736 0.681 1.368 14.815 hybrid contribution 1.435 -0.778 -0.003 1.632 sum -13.300 -0.097 1.365 13.371 Atomic orbital electron populations 1.22072 0.89295 1.05325 1.06439 1.22926 0.93716 0.85154 0.68957 1.90535 1.73455 1.34265 1.37868 1.21804 0.91189 0.95018 1.02957 1.22453 0.94852 0.99037 0.97653 1.19468 0.93131 0.93484 0.95367 1.18641 0.90388 0.94106 0.99768 1.20480 0.93083 0.96812 1.14749 1.20660 0.93957 0.95187 0.94719 1.17218 0.83018 0.95146 1.25770 1.25993 0.92941 0.90788 0.90752 1.81005 1.13204 1.10558 1.16050 1.18639 0.92111 0.90459 0.86624 1.19904 1.01447 0.93321 1.33825 0.91292 1.26666 0.94545 1.04702 0.91200 1.69676 1.15469 1.35148 1.20017 0.85254 0.79827 0.76095 0.79406 1.19452 1.16876 1.18933 1.21439 0.93319 0.96556 1.05362 1.22827 0.95927 0.99363 0.97518 1.23268 0.91474 0.96375 0.94546 1.67611 1.40480 0.97797 1.10401 0.87120 0.89097 0.87197 0.84053 0.85780 0.85605 0.88352 0.84707 0.83315 0.78210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.80 71.24 0.70 -2.03 16 2 C 0.41 10.29 7.24 28.15 0.20 10.49 16 3 O -0.49 -14.99 17.05 -2.82 -0.05 -15.04 16 4 C 0.02 0.68 6.73 41.71 0.28 0.96 16 5 C -0.12 -3.73 9.01 22.90 0.21 -3.52 16 6 C -0.01 -0.23 5.91 -19.86 -0.12 -0.35 16 7 C -0.03 -1.09 5.86 -20.13 -0.12 -1.20 16 8 C -0.23 -8.73 9.39 22.53 0.21 -8.52 16 9 C -0.02 -0.98 9.74 22.47 0.22 -0.76 16 10 C -0.21 -9.31 5.94 -19.55 -0.12 -9.43 16 11 C 0.30 14.34 14.28 88.33 1.26 15.60 16 12 N -0.53 -25.64 18.54 19.00 0.35 -25.28 16 13 C 0.13 6.00 5.73 -19.90 -0.11 5.88 16 14 C -0.46 -21.97 8.58 23.39 0.20 -21.77 16 15 H 0.07 3.46 7.37 -2.91 -0.02 3.44 16 16 C 0.05 2.15 5.16 85.36 0.44 2.59 16 17 N -0.78 -32.83 10.95 21.88 0.24 -32.59 16 18 Si 0.97 33.09 29.60 68.60 2.03 35.12 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.25 -7.52 7.11 99.48 0.71 -6.81 16 21 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 22 C -0.15 -6.32 8.08 22.94 0.19 -6.14 16 23 C -0.14 -3.85 9.49 22.68 0.22 -3.63 16 24 C 0.10 2.33 11.17 84.79 0.95 3.28 16 25 N -0.45 -11.04 9.77 -185.43 -1.81 -12.86 16 26 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.14 4.43 5.85 -2.91 -0.02 4.41 16 30 H 0.12 4.09 6.18 -2.91 -0.02 4.08 16 31 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.30 11.09 8.30 -92.71 -0.77 10.32 16 33 H 0.14 5.61 4.33 -2.91 -0.01 5.60 16 34 H 0.15 4.12 6.27 -2.91 -0.02 4.11 16 35 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -56.54 318.15 6.52 -50.02 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.16 Total: 19.17 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.60 Total: -18.54 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.22 Total: -70.73 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.05 Total: -15.04 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Total: -56.54 6.52 -50.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242610364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.716 kcal (2) G-P(sol) polarization free energy of solvation -56.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds