Wall clock time and date at job start Tue Mar 31 2020 06:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21210 * 119.99402 * 2 1 4 4 C 1.47552 * 120.00138 * 179.97438 * 2 1 3 5 5 C 1.39310 * 119.67792 * 179.97438 * 4 2 1 6 6 C 1.39904 * 118.87043 * 179.97438 * 5 4 2 7 7 C 1.48071 * 120.88229 * 179.97438 * 6 5 4 8 8 C 1.39939 * 119.49723 * 359.97438 * 7 6 5 9 9 C 1.36050 * 121.19540 * 179.97438 * 8 7 6 10 10 C 1.41018 * 120.10091 * 0.02562 * 9 8 7 11 11 C 1.40478 * 120.49066 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00150 * 205.36692 * 11 10 9 13 13 C 1.40351 * 119.99994 * 25.36806 * 11 10 9 14 14 N 1.30602 * 119.99908 * 16.88648 * 13 11 10 15 15 Si 1.86796 * 119.99964 * 196.88651 * 13 11 10 16 16 H 1.48502 * 109.47031 * 265.17280 * 15 13 11 17 17 H 1.48499 * 109.47543 * 25.17701 * 15 13 11 18 18 H 1.48503 * 109.46887 * 145.17826 * 15 13 11 19 19 C 1.46628 * 119.02105 * 0.27490 * 10 9 8 20 20 C 1.43205 * 120.56919 * 179.72560 * 19 10 9 21 21 N 9.69732 * 141.23750 * 180.14717 * 2 1 3 22 22 C 1.39110 * 118.86680 * 359.44750 * 19 10 9 23 23 C 1.39935 * 118.23429 * 0.25003 * 6 5 4 24 24 C 1.38378 * 119.22177 * 359.50353 * 23 6 5 25 25 N 1.31518 * 121.07704 * 0.51132 * 24 23 6 26 26 H 1.09003 * 109.46634 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47160 * 300.00083 * 1 2 3 28 28 H 1.08999 * 109.46773 * 60.00286 * 1 2 3 29 29 H 1.07999 * 120.56343 * 0.02562 * 5 4 2 30 30 H 1.07999 * 119.40421 * 0.02562 * 8 7 6 31 31 H 1.07995 * 119.95007 * 179.97438 * 9 8 7 32 32 H 0.96999 * 120.00097 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.09968 * 180.26536 * 22 19 10 34 34 H 1.07991 * 120.38834 * 179.74806 * 23 6 5 35 35 H 1.08001 * 119.46289 * 180.24921 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1130 1.0498 0.0000 4 6 2.2449 -1.2778 0.0006 5 6 3.6379 -1.2700 0.0000 6 6 4.3203 -2.4913 0.0011 7 6 5.8004 -2.5349 0.0000 8 6 6.5250 -1.3377 -0.0027 9 6 7.8855 -1.3375 -0.0032 10 6 8.5930 -2.5574 -0.0016 11 6 9.9977 -2.5667 -0.0016 12 1 10.5321 -3.4159 -0.4012 13 6 10.7067 -1.4724 0.5177 14 7 10.1017 -0.6082 1.2875 15 14 12.5158 -1.2521 0.1077 16 1 13.3440 -1.8515 1.1847 17 1 12.8169 -1.9255 -1.1812 18 1 12.8247 0.1959 -0.0064 19 6 7.8407 -3.8160 -0.0055 20 6 8.5254 -5.0737 -0.0099 21 7 9.0685 -6.0714 -0.0156 22 6 6.4505 -3.7674 0.0011 23 6 3.5670 -3.6705 -0.0026 24 6 2.1856 -3.5897 0.0032 25 7 1.5736 -2.4256 0.0021 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.1818 -0.3369 -0.0004 30 1 5.9947 -0.3969 -0.0035 31 1 8.4245 -0.4017 -0.0057 32 1 10.5918 0.1479 1.6467 33 1 5.8765 -4.6823 0.0028 34 1 4.0579 -4.6324 -0.0060 35 1 1.6004 -4.4974 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242610580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:17 Heat of formation + Delta-G solvation = 22.326029 kcal Electronic energy + Delta-G solvation = -20969.708854 eV Core-core repulsion = 17703.570937 eV Total energy + Delta-G solvation = -3266.137917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45512 -39.98280 -39.25991 -37.07240 -36.23136 -34.07521 -32.75557 -31.73621 -31.23490 -30.44095 -27.67966 -25.58498 -24.54510 -23.40230 -22.86410 -20.89347 -19.66304 -18.87160 -17.72963 -17.50923 -17.16013 -16.83448 -16.20363 -15.81510 -15.70289 -15.38546 -15.08950 -14.92506 -14.72333 -14.44642 -14.39076 -13.85820 -13.56882 -13.53321 -13.26503 -13.04657 -13.00897 -12.88748 -12.85002 -12.67921 -12.31500 -11.77383 -11.53786 -11.41728 -11.18834 -10.81644 -10.36582 -10.13046 -9.60483 -9.21576 -8.95109 -6.61747 -0.48389 -0.00511 0.41287 1.00133 1.30116 1.34936 1.48105 1.57984 1.98764 2.07860 2.33449 2.58026 2.84195 3.00083 3.42757 3.59502 3.63471 3.86922 4.04991 4.12260 4.21645 4.22572 4.45092 4.57774 4.69854 4.71866 4.81984 4.88298 4.96394 5.02417 5.04916 5.20508 5.31658 5.39999 5.66128 5.76033 5.80627 5.97641 6.02685 6.33526 6.35001 6.50129 6.66182 6.91174 6.94966 7.93478 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.003863 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.479289 B = 7245.970237 C = 8565.839969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.412 3.588 3 O -0.491 6.491 4 C 0.030 3.970 5 C -0.147 4.147 6 C 0.032 3.968 7 C -0.212 4.212 8 C -0.052 4.052 9 C -0.180 4.180 10 C 0.135 3.865 11 C -0.440 4.440 12 H 0.079 0.921 13 C 0.043 3.957 14 N -0.770 5.770 15 Si 0.981 3.019 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.252 1.252 19 C -0.206 4.206 20 C 0.306 3.694 21 N -0.521 5.521 22 C 0.014 3.986 23 C -0.166 4.166 24 C 0.107 3.893 25 N -0.470 5.470 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.306 0.694 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 1.503 -1.409 12.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.291 3.709 3 O -0.366 6.366 4 C -0.104 4.104 5 C -0.168 4.168 6 C 0.024 3.976 7 C -0.213 4.213 8 C -0.072 4.072 9 C -0.199 4.199 10 C 0.129 3.871 11 C -0.466 4.466 12 H 0.097 0.903 13 C -0.181 4.181 14 N -0.392 5.392 15 Si 0.800 3.200 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.176 1.176 19 C -0.212 4.212 20 C -0.004 4.004 21 N -0.201 5.201 22 C -0.007 4.007 23 C -0.185 4.185 24 C -0.052 4.052 25 N -0.183 5.183 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.241 0.821 -1.254 12.332 hybrid contribution 1.937 0.536 0.035 2.010 sum -10.304 1.357 -1.218 10.464 Atomic orbital electron populations 1.22108 0.89511 1.06793 1.05550 1.22995 0.93739 0.85385 0.68791 1.90527 1.73467 1.34521 1.38093 1.21704 0.91195 0.94980 1.02493 1.22351 0.94806 0.99065 1.00530 1.19259 0.92726 0.93114 0.92463 1.17843 0.90235 0.92956 1.20307 1.20734 0.93972 0.96924 0.95531 1.20877 0.93309 0.97496 1.08240 1.18796 0.92909 0.89966 0.85411 1.20062 0.92206 1.02894 1.31456 0.90305 1.26898 1.06104 0.93294 0.91759 1.69680 1.41263 1.10031 1.18202 0.85176 0.75075 0.79661 0.80092 1.18664 1.18260 1.17572 1.16904 0.92300 0.85571 1.26434 1.25819 0.91667 0.92095 0.90780 1.81029 1.09974 1.13269 1.15799 1.20847 0.91175 0.97110 0.91596 1.22731 0.95678 0.99143 1.00992 1.23239 0.91863 0.96137 0.94011 1.67565 1.40482 0.97842 1.12365 0.87793 0.87531 0.87483 0.85217 0.87008 0.86381 0.88234 0.84668 0.82531 0.78409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 10.28 71.24 0.73 -2.38 16 2 C 0.41 10.95 7.24 28.15 0.20 11.15 16 3 O -0.49 -16.14 17.06 -2.81 -0.05 -16.19 16 4 C 0.03 0.87 6.73 41.69 0.28 1.15 16 5 C -0.15 -4.74 9.01 22.93 0.21 -4.54 16 6 C 0.03 1.02 5.91 -19.85 -0.12 0.90 16 7 C -0.21 -7.86 5.88 -19.99 -0.12 -7.97 16 8 C -0.05 -2.10 9.32 22.17 0.21 -1.90 16 9 C -0.18 -8.04 8.62 22.44 0.19 -7.85 16 10 C 0.13 6.32 5.73 -19.86 -0.11 6.21 16 11 C -0.44 -20.85 8.56 23.33 0.20 -20.65 16 12 H 0.08 3.80 7.38 -2.91 -0.02 3.78 16 13 C 0.04 1.84 5.16 85.39 0.44 2.28 16 14 N -0.77 -33.83 10.96 21.90 0.24 -33.59 16 15 Si 0.98 33.15 29.59 68.60 2.03 35.18 16 16 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 17 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 18 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 19 C -0.21 -8.95 5.93 -19.63 -0.12 -9.06 16 20 C 0.31 13.60 14.29 88.33 1.26 14.87 16 21 N -0.52 -23.88 18.54 19.00 0.35 -23.53 16 22 C 0.01 0.50 9.14 22.75 0.21 0.71 16 23 C -0.17 -4.17 9.50 22.71 0.22 -3.96 16 24 C 0.11 2.29 11.17 84.77 0.95 3.24 16 25 N -0.47 -11.74 9.14 -185.48 -1.69 -13.43 16 26 H 0.10 1.64 7.07 -2.39 -0.02 1.62 16 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.13 4.41 5.84 -2.91 -0.02 4.40 16 30 H 0.11 4.12 6.18 -2.91 -0.02 4.11 16 31 H 0.12 5.41 6.20 -2.91 -0.02 5.40 16 32 H 0.31 11.82 8.29 -92.71 -0.77 11.05 16 33 H 0.14 4.10 6.21 -2.91 -0.02 4.08 16 34 H 0.16 3.25 6.27 -2.92 -0.02 3.23 16 35 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -56.29 316.87 6.67 -49.61 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.16 Total: 19.74 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.63 Total: -17.79 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.10 Total: -70.56 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.05 Total: -16.19 kcal Atomic # 14 Polarization: 33.15 SS G_CDS: 2.03 Total: 35.18 kcal Total: -56.29 6.67 -49.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242610580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.940 kcal (2) G-P(sol) polarization free energy of solvation -56.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds