Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86807 * 119.99920 * 2 1 4 4 H 1.48494 * 109.47035 * 240.00083 * 3 2 1 5 5 H 1.48498 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47083 * 119.99878 * 3 2 1 7 7 C 1.38663 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.35659 * 117.00244 * 185.05693 * 9 7 2 11 11 C 1.39042 * 119.94115 * 354.44205 * 10 9 7 12 12 C 1.37784 * 120.05441 * 179.97438 * 11 10 9 13 13 C 1.39519 * 119.94761 * 0.02562 * 12 11 10 14 14 C 1.48162 * 120.06131 * 179.97438 * 13 12 11 15 15 C 1.40541 * 119.20148 * 179.97438 * 14 13 12 16 16 C 1.36328 * 119.84287 * 180.02562 * 15 14 13 17 17 C 1.40745 * 118.11866 * 359.97438 * 16 15 14 18 18 C 1.40463 * 122.16541 * 179.97438 * 17 16 15 19 19 C 1.36307 * 118.68539 * 180.02562 * 18 17 16 20 20 N 1.32527 * 121.75115 * 0.02562 * 19 18 17 21 21 C 1.31191 * 122.83668 * 0.27940 * 20 19 18 22 22 C 1.40665 * 119.98356 * 359.45611 * 21 20 19 23 23 N 1.31978 * 119.20172 * 0.02562 * 14 13 12 24 24 C 1.39530 * 119.88147 * 0.27411 * 13 12 11 25 25 C 1.37793 * 119.94006 * 359.44358 * 24 13 12 26 26 H 0.97002 * 120.00081 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.97270 * 359.96583 * 11 10 9 28 28 H 1.08007 * 120.02454 * 180.02562 * 12 11 10 29 29 H 1.07994 * 120.07527 * 0.02562 * 15 14 13 30 30 H 1.07997 * 120.94172 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.65333 * 0.05456 * 18 17 16 32 32 H 1.08003 * 119.12749 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.00865 * 179.74567 * 21 20 19 34 34 H 1.07993 * 120.03155 * 179.72738 * 24 13 12 35 35 H 1.07998 * 119.97186 * 180.25740 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1031 1.6965 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0695 -3.5037 0.1076 11 6 3.4582 -3.4355 0.0944 12 6 4.2067 -4.5871 0.2035 13 6 3.5702 -5.8225 0.3268 14 6 4.3727 -7.0625 0.4438 15 6 3.7128 -8.2971 0.5677 16 6 4.4383 -9.4462 0.6767 17 6 5.8422 -9.3483 0.6599 18 6 6.6718 -10.4767 0.7669 19 6 8.0232 -10.3000 0.7432 20 7 8.5672 -9.0975 0.6230 21 6 7.8541 -8.0007 0.5245 22 6 6.4493 -8.0724 0.5327 23 7 5.6898 -6.9807 0.4301 24 6 2.1765 -5.8888 0.3335 25 6 1.4325 -4.7336 0.2300 26 1 -0.4850 0.8401 0.0004 27 1 3.9505 -2.4790 -0.0016 28 1 5.2854 -4.5335 0.1936 29 1 2.6336 -8.3355 0.5765 30 1 3.9496 -10.4045 0.7723 31 1 6.2473 -11.4649 0.8655 32 1 8.6677 -11.1627 0.8254 33 1 8.3456 -7.0434 0.4324 34 1 1.6813 -6.8442 0.4244 35 1 0.3538 -4.7839 0.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = 63.731452 kcal Electronic energy + Delta-G solvation = -20859.818904 eV Core-core repulsion = 17595.476461 eV Total energy + Delta-G solvation = -3264.342443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13349 -39.25022 -38.15101 -36.38328 -33.78535 -32.60401 -31.80048 -30.79003 -30.17840 -28.51048 -25.67846 -24.72410 -23.99624 -22.77008 -21.75116 -21.03071 -18.65647 -17.99326 -17.61574 -17.15461 -16.79610 -15.33692 -15.08614 -14.81312 -14.55881 -14.55535 -14.25013 -14.01105 -13.81981 -13.34842 -12.98379 -12.91681 -12.84248 -12.59792 -12.08850 -11.82552 -11.47968 -11.24208 -11.05744 -10.79799 -10.78908 -10.56183 -9.88890 -9.56093 -9.41227 -9.28993 -8.95907 -8.55149 -8.35385 -7.18306 -6.64541 -4.19339 0.12110 0.60181 1.72899 2.10733 2.17537 3.02771 3.05397 3.09085 3.15487 3.83132 4.04726 4.08348 4.31118 4.42570 4.54366 4.55887 4.72150 4.74373 4.93269 5.02212 5.10118 5.33584 5.41985 5.50142 5.64067 5.66594 5.70765 5.81845 6.06660 6.07794 6.25196 6.34041 6.46487 6.58142 6.78270 6.89639 7.08282 7.21380 7.26997 7.62325 7.75424 7.81015 8.02195 8.80263 9.46456 10.51935 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.002971 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.700041 B = 9423.702694 C =10256.773804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.097 0.903 9 O -0.162 6.162 10 C 0.168 3.832 11 C -0.245 4.245 12 C -0.015 4.015 13 C -0.178 4.178 14 C 0.243 3.757 15 C -0.152 4.152 16 C -0.064 4.064 17 C -0.102 4.102 18 C -0.136 4.136 19 C 0.055 3.945 20 N -0.476 5.476 21 C 0.154 3.846 22 C 0.090 3.910 23 N -0.478 5.478 24 C -0.044 4.044 25 C -0.197 4.197 26 H 0.274 0.726 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.118 0.882 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -16.337 1.338 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.115 0.885 9 O -0.063 6.063 10 C 0.111 3.889 11 C -0.264 4.264 12 C -0.035 4.035 13 C -0.180 4.180 14 C 0.095 3.905 15 C -0.173 4.173 16 C -0.089 4.089 17 C -0.109 4.109 18 C -0.157 4.157 19 C -0.088 4.088 20 N -0.185 5.185 21 C -0.019 4.019 22 C -0.036 4.036 23 N -0.189 5.189 24 C -0.063 4.063 25 C -0.216 4.216 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.187 0.813 34 H 0.135 0.865 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.398 -15.430 1.238 18.110 hybrid contribution -0.934 -0.172 0.091 0.954 sum 8.465 -15.602 1.329 17.800 Atomic orbital electron populations 1.70018 1.06130 1.28367 1.44028 1.25385 0.95904 0.99148 0.96007 0.85717 0.78769 0.79195 0.79491 1.19218 1.20104 1.19213 1.21438 0.92131 0.80560 1.52599 0.88529 1.83929 1.34940 1.11788 1.75644 1.19565 0.90385 0.87877 0.91047 1.21152 0.93561 0.99187 1.12507 1.20916 0.99403 0.90735 0.92396 1.17925 0.91941 0.90690 1.17447 1.20157 0.88796 0.92606 0.88967 1.22047 1.02013 0.92608 1.00672 1.21294 0.92064 0.99203 0.96316 1.18940 0.94853 0.94625 1.02510 1.21828 0.94713 0.98396 1.00749 1.22134 0.92998 0.94897 0.98773 1.67438 1.40991 0.98713 1.11325 1.23060 0.88153 0.97343 0.93365 1.19905 0.95818 0.88831 0.98998 1.68039 1.05658 1.29656 1.15500 1.20687 0.92106 0.97094 0.96453 1.20101 0.99730 0.89977 1.11840 0.91555 0.85067 0.85905 0.83920 0.84208 0.84659 0.83017 0.81334 0.86465 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.79 13.67 55.48 0.76 -23.03 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.39 -10.38 9.48 30.89 0.29 -10.09 16 8 H 0.10 2.35 5.19 -52.49 -0.27 2.08 16 9 O -0.16 -4.38 9.75 0.38 0.00 -4.37 16 10 C 0.17 3.83 6.65 -38.99 -0.26 3.57 16 11 C -0.24 -5.11 9.15 -39.45 -0.36 -5.47 16 12 C -0.02 -0.28 9.55 -39.27 -0.38 -0.66 16 13 C -0.18 -3.08 5.88 -104.86 -0.62 -3.69 16 14 C 0.24 3.80 6.73 -82.86 -0.56 3.25 16 15 C -0.15 -1.89 9.37 -39.40 -0.37 -2.26 16 16 C -0.06 -0.69 9.92 -39.32 -0.39 -1.08 16 17 C -0.10 -1.27 5.75 -106.72 -0.61 -1.88 16 18 C -0.14 -1.36 9.87 -39.44 -0.39 -1.75 16 19 C 0.05 0.58 11.08 -17.95 -0.20 0.38 16 20 N -0.48 -6.06 10.29 -13.09 -0.13 -6.19 16 21 C 0.15 2.02 11.26 -16.91 -0.19 1.83 16 22 C 0.09 1.30 6.62 -84.89 -0.56 0.73 16 23 N -0.48 -7.68 9.37 -7.52 -0.07 -7.75 16 24 C -0.04 -0.72 9.40 -39.26 -0.37 -1.09 16 25 C -0.20 -3.84 9.98 -39.45 -0.39 -4.24 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.13 2.72 5.62 -52.49 -0.30 2.42 16 28 H 0.12 2.13 7.51 -52.48 -0.39 1.74 16 29 H 0.14 1.42 6.11 -52.49 -0.32 1.10 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.12 1.49 6.11 -52.49 -0.32 1.17 16 35 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -30.35 309.28 -8.11 -38.46 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.85 Total: 5.19 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -5.45 Total: -21.46 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.55 Total: -36.97 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.00 Total: -4.37 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.35 -8.11 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.193 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds