Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86807 * 119.99920 * 2 1 4 4 H 1.48494 * 109.47035 * 240.00083 * 3 2 1 5 5 H 1.48498 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47083 * 119.99878 * 3 2 1 7 7 C 1.38663 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.35659 * 117.00244 * 185.05693 * 9 7 2 11 11 C 1.39042 * 119.94115 * 354.44205 * 10 9 7 12 12 C 1.37784 * 120.05441 * 179.97438 * 11 10 9 13 13 C 1.39519 * 119.94761 * 0.02562 * 12 11 10 14 14 C 1.48162 * 120.06131 * 179.97438 * 13 12 11 15 15 C 1.40541 * 119.20148 * 179.97438 * 14 13 12 16 16 C 1.36328 * 119.84287 * 180.02562 * 15 14 13 17 17 C 1.40745 * 118.11866 * 359.97438 * 16 15 14 18 18 C 1.40463 * 122.16541 * 179.97438 * 17 16 15 19 19 C 1.36307 * 118.68539 * 180.02562 * 18 17 16 20 20 N 1.32527 * 121.75115 * 0.02562 * 19 18 17 21 21 C 1.31191 * 122.83668 * 0.27940 * 20 19 18 22 22 C 1.40665 * 119.98356 * 359.45611 * 21 20 19 23 23 N 1.31978 * 119.20172 * 0.02562 * 14 13 12 24 24 C 1.39530 * 119.88147 * 0.27411 * 13 12 11 25 25 C 1.37793 * 119.94006 * 359.44358 * 24 13 12 26 26 H 0.97002 * 120.00081 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.97270 * 359.96583 * 11 10 9 28 28 H 1.08007 * 120.02454 * 180.02562 * 12 11 10 29 29 H 1.07994 * 120.07527 * 0.02562 * 15 14 13 30 30 H 1.07997 * 120.94172 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.65333 * 0.05456 * 18 17 16 32 32 H 1.08003 * 119.12749 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.00865 * 179.74567 * 21 20 19 34 34 H 1.07993 * 120.03155 * 179.72738 * 24 13 12 35 35 H 1.07998 * 119.97186 * 180.25740 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1031 1.6965 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0695 -3.5037 0.1076 11 6 3.4582 -3.4355 0.0944 12 6 4.2067 -4.5871 0.2035 13 6 3.5702 -5.8225 0.3268 14 6 4.3727 -7.0625 0.4438 15 6 3.7128 -8.2971 0.5677 16 6 4.4383 -9.4462 0.6767 17 6 5.8422 -9.3483 0.6599 18 6 6.6718 -10.4767 0.7669 19 6 8.0232 -10.3000 0.7432 20 7 8.5672 -9.0975 0.6230 21 6 7.8541 -8.0007 0.5245 22 6 6.4493 -8.0724 0.5327 23 7 5.6898 -6.9807 0.4301 24 6 2.1765 -5.8888 0.3335 25 6 1.4325 -4.7336 0.2300 26 1 -0.4850 0.8401 0.0004 27 1 3.9505 -2.4790 -0.0016 28 1 5.2854 -4.5335 0.1936 29 1 2.6336 -8.3355 0.5765 30 1 3.9496 -10.4045 0.7723 31 1 6.2473 -11.4649 0.8655 32 1 8.6677 -11.1627 0.8254 33 1 8.3456 -7.0434 0.4324 34 1 1.6813 -6.8442 0.4244 35 1 0.3538 -4.7839 0.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = 45.307112 kcal Electronic energy + Delta-G solvation = -20860.617844 eV Core-core repulsion = 17595.476461 eV Total energy + Delta-G solvation = -3265.141383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12349 -40.82126 -39.33686 -37.86456 -34.76411 -34.38594 -33.01047 -32.05429 -31.40534 -29.85737 -27.47823 -25.79783 -25.15181 -23.83687 -23.18167 -22.40538 -20.09614 -19.37080 -18.89334 -18.21446 -18.17202 -16.54519 -16.43630 -16.08466 -15.85718 -15.82593 -15.57659 -15.36386 -15.17391 -14.55044 -14.32584 -14.14393 -14.01578 -13.89363 -13.56672 -13.01264 -12.98994 -12.72407 -12.54525 -12.35534 -12.15499 -11.78999 -11.27135 -10.90460 -10.86904 -10.36345 -10.33268 -9.87509 -9.54911 -8.71896 -8.51842 -6.18366 -0.85189 -0.39907 0.55632 0.58457 1.00557 1.35628 1.45373 1.51117 2.05308 2.15741 2.79403 3.00124 3.04838 3.26801 3.40174 3.44887 3.57343 3.61151 3.80911 3.85357 4.09068 4.12076 4.30405 4.39277 4.46414 4.60579 4.69639 4.75041 4.81877 4.86133 5.00723 5.09893 5.15706 5.26108 5.38802 5.50988 5.62956 5.67613 5.72349 5.97594 6.07697 6.77489 6.92604 6.99719 7.68611 8.69915 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.002971 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.700041 B = 9423.702694 C =10256.773804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.016 4.016 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.103 0.897 9 O -0.218 6.218 10 C 0.134 3.866 11 C -0.251 4.251 12 C -0.027 4.027 13 C -0.155 4.155 14 C 0.217 3.783 15 C -0.158 4.158 16 C -0.045 4.045 17 C -0.109 4.109 18 C -0.123 4.123 19 C 0.050 3.950 20 N -0.490 5.490 21 C 0.139 3.861 22 C 0.058 3.942 23 N -0.499 5.499 24 C -0.030 4.030 25 C -0.203 4.203 26 H 0.275 0.725 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.172 0.828 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -21.150 1.841 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.215 4.215 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.120 0.880 9 O -0.123 6.123 10 C 0.081 3.919 11 C -0.270 4.270 12 C -0.046 4.046 13 C -0.157 4.157 14 C 0.067 3.933 15 C -0.179 4.179 16 C -0.070 4.070 17 C -0.116 4.116 18 C -0.143 4.143 19 C -0.093 4.093 20 N -0.199 5.199 21 C -0.034 4.034 22 C -0.066 4.066 23 N -0.210 5.210 24 C -0.049 4.049 25 C -0.222 4.222 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.190 0.810 30 H 0.206 0.794 31 H 0.197 0.803 32 H 0.203 0.797 33 H 0.188 0.812 34 H 0.186 0.814 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.002 -20.303 1.743 23.157 hybrid contribution -1.019 0.598 -0.012 1.181 sum 9.982 -19.705 1.732 22.157 Atomic orbital electron populations 1.70148 1.07948 1.29157 1.47730 1.26563 0.96828 1.02657 0.95481 0.84679 0.77489 0.74340 0.79961 1.18186 1.19426 1.18246 1.21826 0.92650 0.81326 1.53524 0.87982 1.83912 1.36027 1.12649 1.79663 1.20123 0.91282 0.88204 0.92272 1.21193 0.93271 0.99784 1.12789 1.21059 0.99819 0.90831 0.92884 1.18337 0.92793 0.91164 1.13409 1.20120 0.88859 0.93064 0.91279 1.22261 1.03505 0.91502 1.00591 1.21815 0.91113 1.00637 0.93455 1.19356 0.96300 0.94455 1.01536 1.22276 0.94133 0.99461 0.98444 1.22804 0.94237 0.94930 0.97335 1.67479 1.41535 0.99491 1.11443 1.23148 0.88137 0.97953 0.94121 1.20125 0.96159 0.89623 1.00691 1.67879 1.06351 1.31377 1.15373 1.21129 0.91619 0.98025 0.94101 1.20429 1.00565 0.89786 1.11390 0.91562 0.86036 0.85091 0.81048 0.79446 0.80268 0.79721 0.81209 0.81408 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.53 13.67 21.61 0.30 -54.23 16 2 C -0.02 -0.91 5.49 84.84 0.47 -0.45 16 3 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.42 -23.79 9.48 67.92 0.64 -23.15 16 8 H 0.10 5.38 5.19 -2.91 -0.02 5.36 16 9 O -0.22 -12.66 9.75 -21.57 -0.21 -12.87 16 10 C 0.13 6.43 6.65 22.65 0.15 6.58 16 11 C -0.25 -11.05 9.15 22.36 0.20 -10.84 16 12 C -0.03 -1.01 9.55 22.47 0.21 -0.80 16 13 C -0.16 -5.14 5.88 -20.02 -0.12 -5.25 16 14 C 0.22 6.21 6.73 42.32 0.28 6.49 16 15 C -0.16 -3.14 9.37 22.39 0.21 -2.93 16 16 C -0.05 -0.71 9.92 22.44 0.22 -0.49 16 17 C -0.11 -2.22 5.75 -21.23 -0.12 -2.34 16 18 C -0.12 -1.76 9.87 22.36 0.22 -1.54 16 19 C 0.05 0.83 11.08 84.14 0.93 1.76 16 20 N -0.49 -11.31 10.29 -195.32 -2.01 -13.32 16 21 C 0.14 3.47 11.26 85.38 0.96 4.44 16 22 C 0.06 1.56 6.62 40.40 0.27 1.83 16 23 N -0.50 -15.33 9.37 -177.70 -1.66 -17.00 16 24 C -0.03 -0.92 9.40 22.48 0.21 -0.71 16 25 C -0.20 -7.95 9.98 22.36 0.22 -7.73 16 26 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.12 5.45 5.62 -2.91 -0.02 5.43 16 28 H 0.13 4.65 7.51 -2.91 -0.02 4.63 16 29 H 0.17 2.31 6.11 -2.91 -0.02 2.29 16 30 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 32 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.17 3.41 6.11 -2.91 -0.02 3.39 16 35 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -73.82 309.28 4.56 -69.26 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.14 Total: 19.21 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.97 Total: -35.13 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.38 Total: -84.55 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.21 Total: -12.87 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -73.82 4.56 -69.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.570 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds