Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86802 * 119.99851 * 2 1 4 4 H 1.48505 * 109.47091 * 270.00382 * 3 2 1 5 5 H 1.48504 * 109.46920 * 30.00288 * 3 2 1 6 6 H 1.48502 * 109.47065 * 150.00213 * 3 2 1 7 7 C 1.38674 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99755 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.35603 * 116.99874 * 185.06706 * 9 7 2 11 11 C 1.38777 * 120.15029 * 354.39747 * 10 9 7 12 12 C 1.38082 * 120.05935 * 179.74938 * 11 10 9 13 13 C 1.38514 * 120.37120 * 0.27149 * 12 11 10 14 14 C 1.37915 * 120.29857 * 0.02562 * 13 12 11 15 15 C 1.39503 * 119.92896 * 359.97054 * 14 13 12 16 16 C 1.47905 * 120.17983 * 179.97438 * 15 14 13 17 17 C 1.39084 * 121.12585 * 65.00388 * 16 15 14 18 18 C 1.38811 * 119.50938 * 179.97438 * 17 16 15 19 19 N 1.31255 * 121.97862 * 359.97438 * 18 17 16 20 20 C 1.33724 * 121.88717 * 0.02562 * 19 18 17 21 21 N 1.33751 * 120.76609 * 180.02562 * 20 19 18 22 22 C 1.31157 * 121.41184 * 179.17165 * 21 20 19 23 23 C 1.39192 * 121.79356 * 0.81462 * 22 21 20 24 24 C 1.36790 * 119.77467 * 359.46850 * 23 22 21 25 25 C 1.40297 * 118.13230 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00077 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.96408 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.81272 * 180.25308 * 12 11 10 29 29 H 1.08002 * 119.84910 * 179.97438 * 13 12 11 30 30 H 1.08001 * 120.03609 * 179.97438 * 14 13 12 31 31 H 1.08006 * 120.24284 * 359.95437 * 17 16 15 32 32 H 1.07994 * 119.01017 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.10173 * 180.28123 * 22 21 20 34 34 H 1.08002 * 120.10986 * 179.44311 * 23 22 21 35 35 H 1.08002 * 120.93667 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0694 -3.5033 0.1056 11 6 3.4556 -3.4402 0.0912 12 6 4.2018 -4.5965 0.2046 13 6 3.5747 -5.8254 0.3277 14 6 2.1980 -5.9062 0.3377 15 6 1.4319 -4.7459 0.2240 16 6 -0.0450 -4.8260 0.2334 17 6 -0.7342 -5.2589 1.3612 18 6 -2.1207 -5.3207 1.3334 19 7 -2.8104 -4.9810 0.2696 20 6 -2.2171 -4.5556 -0.8508 21 7 -2.9421 -4.2147 -1.9219 22 6 -2.3743 -3.7807 -3.0216 23 6 -0.9918 -3.6682 -3.1381 24 6 -0.1914 -4.0056 -2.0814 25 6 -0.8059 -4.4582 -0.9041 26 1 -0.4850 0.8400 0.0004 27 1 3.9512 -2.4854 -0.0044 28 1 5.2804 -4.5424 0.1970 29 1 4.1666 -6.7246 0.4155 30 1 1.7134 -6.8666 0.4335 31 1 -0.1947 -5.5452 2.2520 32 1 -2.6477 -5.6576 2.2137 33 1 -2.9959 -3.5113 -3.8627 34 1 -0.5526 -3.3160 -4.0598 35 1 0.8834 -3.9259 -2.1513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = 70.916893 kcal Electronic energy + Delta-G solvation = -22479.724888 eV Core-core repulsion = 19215.694029 eV Total energy + Delta-G solvation = -3264.030859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70068 -39.14556 -37.29598 -36.53297 -33.94334 -32.44444 -31.25307 -30.33397 -29.44380 -28.70883 -25.54426 -24.57215 -23.61291 -22.75921 -21.58253 -20.47802 -18.50624 -18.14848 -17.21146 -16.95634 -16.28863 -15.05364 -14.83652 -14.59526 -14.42942 -14.24262 -14.12815 -13.87580 -13.75795 -13.41489 -12.82468 -12.62486 -12.52723 -11.85510 -11.79481 -11.58932 -11.29203 -11.07081 -11.00310 -10.94142 -10.57729 -10.25951 -10.01786 -9.58859 -9.00388 -8.56243 -8.51195 -8.46588 -8.06110 -7.40220 -6.59619 -4.20053 0.67214 1.14602 1.82888 2.16477 2.50823 3.02626 3.04305 3.09189 3.28635 3.82401 4.19165 4.31147 4.63257 4.85122 4.90789 5.02438 5.10358 5.14034 5.22320 5.34247 5.47836 5.54951 5.62020 5.67525 5.84020 5.90884 6.04908 6.18331 6.24231 6.39155 6.47967 6.57950 6.67659 6.77641 6.90576 6.99138 7.10777 7.15777 7.20715 7.57444 7.81423 7.88877 8.63243 8.83812 9.48620 10.55946 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.007525 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.789824 B = 3720.267608 C = 5048.680776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.399 4.399 8 H 0.094 0.906 9 O -0.160 6.160 10 C 0.167 3.833 11 C -0.233 4.233 12 C -0.062 4.062 13 C -0.216 4.216 14 C -0.049 4.049 15 C -0.159 4.159 16 C 0.083 3.917 17 C -0.192 4.192 18 C 0.159 3.841 19 N -0.483 5.483 20 C 0.311 3.689 21 N -0.478 5.478 22 C 0.157 3.843 23 C -0.194 4.194 24 C -0.004 4.004 25 C -0.133 4.133 26 H 0.272 0.728 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -8.042 -1.902 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.161 4.161 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.111 0.889 9 O -0.061 6.061 10 C 0.111 3.889 11 C -0.253 4.253 12 C -0.080 4.080 13 C -0.235 4.235 14 C -0.067 4.067 15 C -0.160 4.160 16 C 0.074 3.926 17 C -0.212 4.212 18 C -0.015 4.015 19 N -0.193 5.193 20 C 0.073 3.927 21 N -0.187 5.187 22 C -0.018 4.018 23 C -0.215 4.215 24 C -0.030 4.030 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.854 -7.924 -1.851 8.182 hybrid contribution 2.476 1.198 0.044 2.751 sum 3.330 -6.726 -1.806 7.719 Atomic orbital electron populations 1.70043 1.05958 1.28020 1.44089 1.25311 0.95799 0.98872 0.96151 0.85736 0.79008 0.80027 0.78857 1.19728 1.20130 1.19079 1.21358 0.91860 0.80601 1.53679 0.88865 1.83982 1.34236 1.11320 1.76596 1.19300 0.90100 0.87218 0.92254 1.21134 0.93333 0.99315 1.11481 1.20884 0.98723 0.92292 0.96119 1.20521 0.93991 0.97169 1.11827 1.20690 0.93473 0.95698 0.96836 1.17667 0.90085 0.91798 1.16499 1.19040 0.92465 0.89656 0.91418 1.22212 0.95347 1.04781 0.98860 1.22742 0.91034 0.92466 0.95290 1.67432 1.40061 1.12916 0.98924 1.19167 0.86213 0.95531 0.91777 1.67559 1.39426 1.12550 0.99159 1.22876 0.92683 0.91696 0.94565 1.21842 0.95051 1.03968 1.00593 1.21390 1.00839 0.90039 0.90765 1.19547 0.95136 1.03178 0.95947 0.91756 0.85122 0.87184 0.87159 0.86707 0.84452 0.82261 0.82324 0.84610 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.12 13.67 55.48 0.76 -23.36 16 2 C 0.05 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 19.71 29.55 -169.99 -5.02 14.69 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.40 -10.44 9.49 30.89 0.29 -10.15 16 8 H 0.09 2.24 5.21 -52.48 -0.27 1.97 16 9 O -0.16 -4.19 8.39 0.58 0.00 -4.19 16 10 C 0.17 3.70 5.56 -38.66 -0.21 3.49 16 11 C -0.23 -4.62 9.16 -39.44 -0.36 -4.98 16 12 C -0.06 -1.02 10.03 -39.54 -0.40 -1.42 16 13 C -0.22 -3.37 10.03 -39.60 -0.40 -3.76 16 14 C -0.05 -0.81 9.75 -39.23 -0.38 -1.19 16 15 C -0.16 -3.13 4.60 -104.75 -0.48 -3.61 16 16 C 0.08 1.67 4.98 -104.30 -0.52 1.15 16 17 C -0.19 -3.34 9.83 -39.06 -0.38 -3.72 16 18 C 0.16 2.70 11.12 -17.59 -0.20 2.50 16 19 N -0.48 -9.94 10.40 -12.73 -0.13 -10.08 16 20 C 0.31 6.73 7.62 -157.82 -1.20 5.53 16 21 N -0.48 -9.82 10.43 -12.65 -0.13 -9.96 16 22 C 0.16 2.67 11.14 -17.49 -0.19 2.47 16 23 C -0.19 -3.29 10.04 -39.75 -0.40 -3.69 16 24 C 0.00 -0.07 8.72 -39.33 -0.34 -0.41 16 25 C -0.13 -2.81 5.59 -106.53 -0.60 -3.41 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 32 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.14 2.70 6.58 -52.49 -0.35 2.35 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -32.24 309.06 -8.75 -40.99 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.01 Total: 7.36 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -5.87 Total: -20.12 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.49 Total: -43.39 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: 0.00 Total: -4.19 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.24 -8.75 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.906 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds