Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86802 * 119.99851 * 2 1 4 4 H 1.48505 * 109.47091 * 270.00382 * 3 2 1 5 5 H 1.48504 * 109.46920 * 30.00288 * 3 2 1 6 6 H 1.48502 * 109.47065 * 150.00213 * 3 2 1 7 7 C 1.38674 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99755 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.35603 * 116.99874 * 185.06706 * 9 7 2 11 11 C 1.38777 * 120.15029 * 354.39747 * 10 9 7 12 12 C 1.38082 * 120.05935 * 179.74938 * 11 10 9 13 13 C 1.38514 * 120.37120 * 0.27149 * 12 11 10 14 14 C 1.37915 * 120.29857 * 0.02562 * 13 12 11 15 15 C 1.39503 * 119.92896 * 359.97054 * 14 13 12 16 16 C 1.47905 * 120.17983 * 179.97438 * 15 14 13 17 17 C 1.39084 * 121.12585 * 65.00388 * 16 15 14 18 18 C 1.38811 * 119.50938 * 179.97438 * 17 16 15 19 19 N 1.31255 * 121.97862 * 359.97438 * 18 17 16 20 20 C 1.33724 * 121.88717 * 0.02562 * 19 18 17 21 21 N 1.33751 * 120.76609 * 180.02562 * 20 19 18 22 22 C 1.31157 * 121.41184 * 179.17165 * 21 20 19 23 23 C 1.39192 * 121.79356 * 0.81462 * 22 21 20 24 24 C 1.36790 * 119.77467 * 359.46850 * 23 22 21 25 25 C 1.40297 * 118.13230 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00077 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.96408 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.81272 * 180.25308 * 12 11 10 29 29 H 1.08002 * 119.84910 * 179.97438 * 13 12 11 30 30 H 1.08001 * 120.03609 * 179.97438 * 14 13 12 31 31 H 1.08006 * 120.24284 * 359.95437 * 17 16 15 32 32 H 1.07994 * 119.01017 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.10173 * 180.28123 * 22 21 20 34 34 H 1.08002 * 120.10986 * 179.44311 * 23 22 21 35 35 H 1.08002 * 120.93667 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0694 -3.5033 0.1056 11 6 3.4556 -3.4402 0.0912 12 6 4.2018 -4.5965 0.2046 13 6 3.5747 -5.8254 0.3277 14 6 2.1980 -5.9062 0.3377 15 6 1.4319 -4.7459 0.2240 16 6 -0.0450 -4.8260 0.2334 17 6 -0.7342 -5.2589 1.3612 18 6 -2.1207 -5.3207 1.3334 19 7 -2.8104 -4.9810 0.2696 20 6 -2.2171 -4.5556 -0.8508 21 7 -2.9421 -4.2147 -1.9219 22 6 -2.3743 -3.7807 -3.0216 23 6 -0.9918 -3.6682 -3.1381 24 6 -0.1914 -4.0056 -2.0814 25 6 -0.8059 -4.4582 -0.9041 26 1 -0.4850 0.8400 0.0004 27 1 3.9512 -2.4854 -0.0044 28 1 5.2804 -4.5424 0.1970 29 1 4.1666 -6.7246 0.4155 30 1 1.7134 -6.8666 0.4335 31 1 -0.1947 -5.5452 2.2520 32 1 -2.6477 -5.6576 2.2137 33 1 -2.9959 -3.5113 -3.8627 34 1 -0.5526 -3.3160 -4.0598 35 1 0.8834 -3.9259 -2.1513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = 51.529104 kcal Electronic energy + Delta-G solvation = -22480.565606 eV Core-core repulsion = 19215.694029 eV Total energy + Delta-G solvation = -3264.871577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13785 -40.70522 -38.72946 -38.08405 -35.38535 -34.30169 -32.69611 -31.73132 -30.88812 -30.21173 -27.38483 -25.98124 -25.03841 -24.21272 -23.13336 -21.93563 -19.94281 -19.81841 -18.78693 -18.38556 -17.78946 -16.56281 -16.43376 -16.13806 -15.79989 -15.73550 -15.60053 -15.41738 -15.21186 -14.81707 -14.43532 -14.03933 -13.98265 -13.58487 -13.23979 -13.09399 -12.73168 -12.58205 -12.45349 -12.38460 -12.18531 -11.74260 -11.47333 -11.26585 -10.83973 -10.02652 -9.95444 -9.87436 -9.51059 -8.97125 -8.48626 -6.16273 -0.75215 -0.26970 0.39288 0.70218 1.03032 1.32388 1.40558 1.48529 1.92341 2.12976 2.77800 2.86556 3.10125 3.17728 3.38244 3.47763 3.69163 3.82420 3.84443 3.97337 4.16513 4.23944 4.30196 4.36686 4.47595 4.54562 4.64188 4.76725 4.84125 4.98539 5.03170 5.10279 5.19833 5.28998 5.39210 5.59539 5.63042 5.72522 5.74949 5.96742 6.16558 6.46037 6.95746 7.19666 7.74581 8.71845 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.007525 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.789824 B = 3720.267608 C = 5048.680776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.014 4.014 3 Si 1.009 2.991 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.208 6.208 10 C 0.136 3.864 11 C -0.248 4.248 12 C -0.058 4.058 13 C -0.189 4.189 14 C -0.049 4.049 15 C -0.159 4.159 16 C 0.055 3.945 17 C -0.186 4.186 18 C 0.160 3.840 19 N -0.512 5.512 20 C 0.282 3.718 21 N -0.507 5.507 22 C 0.158 3.842 23 C -0.187 4.187 24 C -0.028 4.028 25 C -0.155 4.155 26 H 0.269 0.731 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.206 0.794 33 H 0.205 0.795 34 H 0.171 0.829 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -9.931 -1.713 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.213 4.213 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.488 4.488 8 H 0.120 0.880 9 O -0.113 6.113 10 C 0.084 3.916 11 C -0.267 4.267 12 C -0.076 4.076 13 C -0.208 4.208 14 C -0.067 4.067 15 C -0.161 4.161 16 C 0.046 3.954 17 C -0.206 4.206 18 C -0.013 4.013 19 N -0.222 5.222 20 C 0.044 3.956 21 N -0.217 5.217 22 C -0.017 4.017 23 C -0.207 4.207 24 C -0.055 4.055 25 C -0.160 4.160 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.186 0.814 32 H 0.223 0.777 33 H 0.222 0.778 34 H 0.189 0.811 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.966 -9.874 -1.662 10.443 hybrid contribution 1.966 1.413 -0.001 2.421 sum 4.931 -8.461 -1.663 9.933 Atomic orbital electron populations 1.70209 1.07960 1.28459 1.48208 1.26432 0.96556 1.02433 0.95885 0.84707 0.77957 0.75161 0.79228 1.18808 1.20285 1.17509 1.21786 0.92463 0.81384 1.53146 0.87958 1.83977 1.35323 1.12072 1.79940 1.19820 0.91263 0.87181 0.93341 1.21283 0.92741 1.00537 1.12131 1.21305 1.00508 0.91363 0.94464 1.21096 0.93802 0.98324 1.07552 1.21119 0.94111 0.95775 0.95733 1.17967 0.90404 0.91960 1.15723 1.19340 0.92972 0.90904 0.92221 1.22606 0.95761 1.03310 0.98928 1.23514 0.91318 0.90830 0.95636 1.67487 1.41003 1.14101 0.99635 1.19500 0.86739 0.96685 0.92646 1.67606 1.40187 1.13864 1.00027 1.23650 0.93326 0.89940 0.94757 1.22279 0.95130 1.02173 1.01099 1.21469 1.00672 0.91652 0.91725 1.19765 0.95349 1.03898 0.96978 0.92230 0.86008 0.83498 0.82752 0.83720 0.81424 0.77725 0.77831 0.81119 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.95 13.67 21.62 0.30 -54.65 16 2 C -0.01 -0.78 5.49 84.84 0.47 -0.32 16 3 Si 1.01 41.70 29.55 68.60 2.03 43.73 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.41 -22.52 9.49 67.92 0.64 -21.88 16 8 H 0.10 5.11 5.21 -2.91 -0.02 5.09 16 9 O -0.21 -11.49 8.39 -20.86 -0.18 -11.67 16 10 C 0.14 6.15 5.56 22.86 0.13 6.27 16 11 C -0.25 -9.68 9.16 22.36 0.20 -9.48 16 12 C -0.06 -1.73 10.03 22.30 0.22 -1.50 16 13 C -0.19 -4.99 10.03 22.26 0.22 -4.77 16 14 C -0.05 -1.48 9.75 22.50 0.22 -1.26 16 15 C -0.16 -6.20 4.60 -19.95 -0.09 -6.29 16 16 C 0.05 2.21 4.98 -19.65 -0.10 2.12 16 17 C -0.19 -6.33 9.83 22.61 0.22 -6.11 16 18 C 0.16 5.32 11.12 84.92 0.94 6.26 16 19 N -0.51 -21.35 10.40 -194.18 -2.02 -23.37 16 20 C 0.28 12.57 7.62 134.97 1.03 13.60 16 21 N -0.51 -21.30 10.43 -193.94 -2.02 -23.32 16 22 C 0.16 5.32 11.14 85.02 0.95 6.27 16 23 C -0.19 -6.39 10.04 22.16 0.22 -6.16 16 24 C -0.03 -1.17 8.72 22.43 0.20 -0.97 16 25 C -0.16 -6.78 5.59 -21.10 -0.12 -6.90 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.12 4.88 5.64 -2.91 -0.02 4.86 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.21 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 35 H 0.13 5.26 6.58 -2.91 -0.02 5.24 16 Total: -1.00 -76.91 309.06 4.60 -72.31 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 1.14 Total: 28.09 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 5.36 Total: -31.11 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.75 Total: -101.34 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.18 Total: -11.67 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -76.91 4.60 -72.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.834 kcal (2) G-P(sol) polarization free energy of solvation -76.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds