Wall clock time and date at job start Tue Mar 31 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47113 * 85.02939 * 3 2 1 5 5 H 1.48493 * 109.47571 * 205.02968 * 3 2 1 6 6 H 1.48507 * 109.47306 * 325.02864 * 3 2 1 7 7 C 1.40012 * 120.00029 * 179.72740 * 2 1 3 8 8 H 1.08001 * 120.00127 * 188.16080 * 7 2 1 9 9 C 1.41365 * 120.00018 * 8.15278 * 7 2 1 10 10 C 1.40721 * 119.76862 * 187.91639 * 9 7 2 11 11 C 1.38267 * 119.19449 * 179.78894 * 10 9 7 12 12 C 1.38714 * 118.69430 * 0.48708 * 11 10 9 13 13 C 1.39911 * 119.45996 * 359.73984 * 12 11 10 14 14 C 1.48242 * 119.60816 * 180.02562 * 13 12 11 15 15 C 1.40420 * 119.78739 * 348.68732 * 14 13 12 16 16 C 1.35805 * 120.90660 * 179.68687 * 15 14 13 17 17 C 1.40684 * 120.08718 * 0.60534 * 16 15 14 18 18 N 1.33760 * 120.77953 * 179.67856 * 17 16 15 19 19 C 1.31565 * 121.32892 * 180.02562 * 18 17 16 20 20 O 1.35548 * 119.19602 * 179.97438 * 19 18 17 21 21 C 1.40042 * 121.60410 * 0.02562 * 19 18 17 22 22 C 1.36285 * 119.87124 * 359.97438 * 21 19 18 23 23 C 1.41054 * 118.25814 * 0.02562 * 22 21 19 24 24 C 1.38385 * 119.78604 * 168.96225 * 14 13 12 25 25 N 1.32273 * 120.78118 * 0.02632 * 13 12 11 26 26 H 0.97000 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.40148 * 0.03068 * 10 9 7 28 28 H 1.07999 * 120.65198 * 180.22453 * 11 10 9 29 29 H 1.07997 * 120.27426 * 179.71569 * 12 11 10 30 30 H 1.07996 * 119.54953 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.95628 * 180.28746 * 16 15 14 32 32 H 0.96698 * 114.00287 * 270.02275 * 20 19 18 33 33 H 1.08003 * 120.06275 * 180.02562 * 21 19 18 34 34 H 1.07994 * 120.87101 * 180.02562 * 22 21 19 35 35 H 1.07999 * 120.28384 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3840 2.1070 1.3949 5 1 3.5876 1.4122 -0.5923 6 1 1.4955 2.6201 -0.8025 7 6 2.0076 -1.2125 0.0058 8 1 3.0794 -1.2166 0.1386 9 6 1.3115 -2.4314 -0.1620 10 6 1.9892 -3.6525 0.0103 11 6 1.2958 -4.8376 -0.1524 12 6 -0.0481 -4.7817 -0.4915 13 6 -0.6656 -3.5368 -0.6540 14 6 -2.1018 -3.4732 -1.0158 15 6 -2.7705 -4.6385 -1.4241 16 6 -4.0874 -4.6075 -1.7546 17 6 -4.7990 -3.3951 -1.7034 18 7 -6.0947 -3.3475 -2.0321 19 6 -6.7706 -2.2195 -1.9886 20 8 -8.0820 -2.2208 -2.3314 21 6 -6.1678 -1.0174 -1.5976 22 6 -4.8499 -1.0004 -1.2505 23 6 -4.1308 -2.2128 -1.2993 24 6 -2.7733 -2.2648 -0.9545 25 7 0.0169 -2.4159 -0.4885 26 1 -0.4850 0.8400 -0.0004 27 1 3.0374 -3.6639 0.2703 28 1 1.7918 -5.7881 -0.0223 29 1 -0.6131 -5.6917 -0.6295 30 1 -2.2314 -5.5731 -1.4715 31 1 -4.5877 -5.5139 -2.0621 32 1 -8.2431 -2.0576 -3.2708 33 1 -6.7463 -0.1058 -1.5704 34 1 -4.3689 -0.0826 -0.9462 35 1 -2.2557 -1.3692 -0.6441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244234024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:45 Heat of formation + Delta-G solvation = 44.403147 kcal Electronic energy + Delta-G solvation = -21503.400558 eV Core-core repulsion = 18238.219977 eV Total energy + Delta-G solvation = -3265.180581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64903 -38.66190 -37.73776 -35.64700 -33.69780 -33.30634 -31.21202 -30.61630 -29.79360 -28.32287 -25.83690 -23.84669 -23.59596 -22.08646 -21.03769 -20.95782 -18.80174 -17.79492 -17.58475 -16.61276 -15.95837 -15.45636 -14.96813 -14.72470 -14.35593 -14.02424 -13.75718 -13.55289 -13.32877 -13.12306 -12.69833 -12.48767 -12.36294 -11.86924 -11.40768 -11.25977 -11.15270 -11.08335 -11.01321 -10.79081 -10.53410 -10.38342 -10.05377 -9.46601 -9.29710 -8.70889 -8.30872 -8.05639 -7.74672 -7.21507 -6.61521 -4.62036 0.57840 0.93602 2.21052 2.51823 2.80842 3.02605 3.04967 3.09836 3.33633 3.70084 3.85988 4.33913 4.68147 4.72159 4.89633 5.02529 5.07666 5.25004 5.48293 5.57254 5.75854 5.79723 5.94826 6.01078 6.08301 6.18833 6.34265 6.46485 6.55393 6.63630 6.68115 6.70718 7.01301 7.08112 7.18162 7.25703 7.46279 7.48122 7.60922 7.89826 8.03194 8.11359 8.54512 8.78775 9.89492 10.17319 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.004699 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.083084 B = 5957.771151 C = 7599.182151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.275 1.275 7 C -0.433 4.433 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.269 4.269 11 C -0.059 4.059 12 C -0.298 4.298 13 C 0.172 3.828 14 C -0.021 4.021 15 C -0.073 4.073 16 C -0.115 4.115 17 C 0.144 3.856 18 N -0.498 5.498 19 C 0.327 3.673 20 O -0.486 6.486 21 C -0.198 4.198 22 C -0.032 4.032 23 C -0.113 4.113 24 C -0.055 4.055 25 N -0.472 5.472 26 H 0.274 0.726 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.398 0.602 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 -0.450 -3.702 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.149 4.149 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.185 1.185 6 H -0.200 1.200 7 C -0.464 4.464 8 H 0.103 0.897 9 C 0.135 3.865 10 C -0.292 4.292 11 C -0.083 4.083 12 C -0.321 4.321 13 C 0.028 3.972 14 C -0.022 4.022 15 C -0.093 4.093 16 C -0.134 4.134 17 C 0.023 3.977 18 N -0.217 5.217 19 C 0.133 3.867 20 O -0.293 6.293 21 C -0.220 4.220 22 C -0.057 4.057 23 C -0.115 4.115 24 C -0.075 4.075 25 N -0.184 5.184 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.255 0.745 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.371 -0.384 -3.450 9.994 hybrid contribution 1.177 0.654 -0.095 1.350 sum -8.194 0.270 -3.546 8.932 Atomic orbital electron populations 1.69984 1.07425 1.28002 1.29204 1.25987 0.94831 1.01075 0.93028 0.86314 0.80707 0.80775 0.79062 1.19491 1.18454 1.19987 1.19587 0.95077 0.89530 1.42219 0.89692 1.18474 0.87781 0.92028 0.88221 1.21826 0.99964 0.93564 1.13873 1.20806 0.93967 0.96806 0.96690 1.21205 0.96054 0.96700 1.18187 1.19622 0.91535 0.90202 0.95818 1.18865 0.92852 0.92640 0.97842 1.21071 0.93691 0.98518 0.96035 1.20523 0.93812 0.96216 1.02844 1.18527 0.88024 0.93513 0.97671 1.67403 1.07761 1.28920 1.17592 1.19276 0.83947 0.88195 0.95325 1.84728 1.19208 1.94210 1.31161 1.21710 0.95920 0.98593 1.05742 1.21502 0.93195 0.97778 0.93236 1.18944 0.95818 0.93981 1.02735 1.21841 0.90930 0.99818 0.94905 1.68609 1.07939 1.25663 1.16208 0.91520 0.88126 0.88313 0.88267 0.84900 0.85027 0.74532 0.84433 0.83723 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.75 11.45 55.55 0.64 -17.11 16 2 C 0.08 1.82 5.46 -17.35 -0.09 1.72 16 3 Si 0.91 17.68 29.57 -169.99 -5.03 12.65 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.43 -11.03 9.13 -37.73 -0.34 -11.37 16 8 H 0.08 2.03 7.86 -52.49 -0.41 1.62 16 9 C 0.26 6.81 6.51 -85.01 -0.55 6.25 16 10 C -0.27 -6.35 9.83 -38.63 -0.38 -6.73 16 11 C -0.06 -1.26 10.15 -39.40 -0.40 -1.66 16 12 C -0.30 -6.40 9.44 -38.78 -0.37 -6.76 16 13 C 0.17 4.00 6.70 -82.94 -0.56 3.45 16 14 C -0.02 -0.43 5.86 -104.91 -0.61 -1.04 16 15 C -0.07 -1.24 9.29 -39.63 -0.37 -1.60 16 16 C -0.12 -1.86 9.95 -39.53 -0.39 -2.26 16 17 C 0.14 2.50 6.61 -84.79 -0.56 1.94 16 18 N -0.50 -8.34 10.36 -11.00 -0.11 -8.45 16 19 C 0.33 4.72 7.72 -16.99 -0.13 4.59 16 20 O -0.49 -5.76 13.54 -18.34 -0.25 -6.01 16 21 C -0.20 -2.58 9.95 -39.61 -0.39 -2.97 16 22 C -0.03 -0.46 9.88 -39.22 -0.39 -0.84 16 23 C -0.11 -1.96 5.74 -106.79 -0.61 -2.58 16 24 C -0.06 -1.09 9.31 -38.81 -0.36 -1.45 16 25 N -0.47 -12.20 7.08 -7.68 -0.05 -12.25 16 26 H 0.27 6.02 8.29 -40.82 -0.34 5.68 16 27 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.10 1.83 6.29 -52.49 -0.33 1.50 16 30 H 0.13 1.98 6.26 -52.49 -0.33 1.66 16 31 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.40 2.58 9.06 45.56 0.41 2.99 16 33 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.16 3.47 7.40 -52.49 -0.39 3.08 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -29.81 310.29 -8.94 -38.75 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -2.29 Total: 9.06 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -6.52 Total: -21.32 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.47 Total: -37.82 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.25 Total: -6.01 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.81 -8.94 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244234024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.157 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds