Wall clock time and date at job start Tue Mar 31 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47113 * 85.02939 * 3 2 1 5 5 H 1.48493 * 109.47571 * 205.02968 * 3 2 1 6 6 H 1.48507 * 109.47306 * 325.02864 * 3 2 1 7 7 C 1.40012 * 120.00029 * 179.72740 * 2 1 3 8 8 H 1.08001 * 120.00127 * 188.16080 * 7 2 1 9 9 C 1.41365 * 120.00018 * 8.15278 * 7 2 1 10 10 C 1.40721 * 119.76862 * 187.91639 * 9 7 2 11 11 C 1.38267 * 119.19449 * 179.78894 * 10 9 7 12 12 C 1.38714 * 118.69430 * 0.48708 * 11 10 9 13 13 C 1.39911 * 119.45996 * 359.73984 * 12 11 10 14 14 C 1.48242 * 119.60816 * 180.02562 * 13 12 11 15 15 C 1.40420 * 119.78739 * 348.68732 * 14 13 12 16 16 C 1.35805 * 120.90660 * 179.68687 * 15 14 13 17 17 C 1.40684 * 120.08718 * 0.60534 * 16 15 14 18 18 N 1.33760 * 120.77953 * 179.67856 * 17 16 15 19 19 C 1.31565 * 121.32892 * 180.02562 * 18 17 16 20 20 O 1.35548 * 119.19602 * 179.97438 * 19 18 17 21 21 C 1.40042 * 121.60410 * 0.02562 * 19 18 17 22 22 C 1.36285 * 119.87124 * 359.97438 * 21 19 18 23 23 C 1.41054 * 118.25814 * 0.02562 * 22 21 19 24 24 C 1.38385 * 119.78604 * 168.96225 * 14 13 12 25 25 N 1.32273 * 120.78118 * 0.02632 * 13 12 11 26 26 H 0.97000 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.40148 * 0.03068 * 10 9 7 28 28 H 1.07999 * 120.65198 * 180.22453 * 11 10 9 29 29 H 1.07997 * 120.27426 * 179.71569 * 12 11 10 30 30 H 1.07996 * 119.54953 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.95628 * 180.28746 * 16 15 14 32 32 H 0.96698 * 114.00287 * 270.02275 * 20 19 18 33 33 H 1.08003 * 120.06275 * 180.02562 * 21 19 18 34 34 H 1.07994 * 120.87101 * 180.02562 * 22 21 19 35 35 H 1.07999 * 120.28384 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3840 2.1070 1.3949 5 1 3.5876 1.4122 -0.5923 6 1 1.4955 2.6201 -0.8025 7 6 2.0076 -1.2125 0.0058 8 1 3.0794 -1.2166 0.1386 9 6 1.3115 -2.4314 -0.1620 10 6 1.9892 -3.6525 0.0103 11 6 1.2958 -4.8376 -0.1524 12 6 -0.0481 -4.7817 -0.4915 13 6 -0.6656 -3.5368 -0.6540 14 6 -2.1018 -3.4732 -1.0158 15 6 -2.7705 -4.6385 -1.4241 16 6 -4.0874 -4.6075 -1.7546 17 6 -4.7990 -3.3951 -1.7034 18 7 -6.0947 -3.3475 -2.0321 19 6 -6.7706 -2.2195 -1.9886 20 8 -8.0820 -2.2208 -2.3314 21 6 -6.1678 -1.0174 -1.5976 22 6 -4.8499 -1.0004 -1.2505 23 6 -4.1308 -2.2128 -1.2993 24 6 -2.7733 -2.2648 -0.9545 25 7 0.0169 -2.4159 -0.4885 26 1 -0.4850 0.8400 -0.0004 27 1 3.0374 -3.6639 0.2703 28 1 1.7918 -5.7881 -0.0223 29 1 -0.6131 -5.6917 -0.6295 30 1 -2.2314 -5.5731 -1.4715 31 1 -4.5877 -5.5139 -2.0621 32 1 -8.2431 -2.0576 -3.2708 33 1 -6.7463 -0.1058 -1.5704 34 1 -4.3689 -0.0826 -0.9462 35 1 -2.2557 -1.3692 -0.6441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244234024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:45 Heat of formation + Delta-G solvation = 24.634942 kcal Electronic energy + Delta-G solvation = -21504.257772 eV Core-core repulsion = 18238.219977 eV Total energy + Delta-G solvation = -3266.037795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87616 -40.23456 -39.01870 -36.89179 -35.43819 -34.53662 -32.80704 -32.30266 -31.09944 -29.83464 -27.56523 -25.17966 -24.92476 -23.55483 -22.64705 -22.44760 -19.96621 -19.40645 -18.88483 -18.03616 -17.13702 -16.97418 -16.52341 -16.21419 -15.77398 -15.59597 -15.08558 -14.88454 -14.77540 -14.38970 -14.15776 -14.02187 -13.89932 -13.07673 -12.97322 -12.76605 -12.69818 -12.52609 -12.47065 -12.30643 -12.10616 -11.72873 -11.59262 -11.18037 -10.49738 -10.28885 -9.86998 -9.53123 -9.49607 -8.77911 -8.36775 -6.48918 -0.69347 -0.30636 0.74366 1.05204 1.18872 1.41650 1.50721 1.55440 1.96844 2.23109 2.59428 2.83919 3.12198 3.54885 3.62324 3.67285 3.88213 3.96325 4.03890 4.28032 4.30952 4.42126 4.50333 4.73097 4.82181 4.83282 4.86985 4.90536 5.10883 5.13788 5.19361 5.30563 5.45762 5.53006 5.60010 5.75244 5.83745 5.88989 6.17410 6.27915 6.61612 6.74134 6.86632 6.95171 8.11259 8.43831 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.004699 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.083084 B = 5957.771151 C = 7599.182151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.268 1.268 7 C -0.472 4.472 8 H 0.087 0.913 9 C 0.226 3.774 10 C -0.295 4.295 11 C -0.057 4.057 12 C -0.298 4.298 13 C 0.153 3.847 14 C -0.050 4.050 15 C -0.072 4.072 16 C -0.108 4.108 17 C 0.133 3.867 18 N -0.521 5.521 19 C 0.336 3.664 20 O -0.487 6.487 21 C -0.182 4.182 22 C -0.039 4.039 23 C -0.128 4.128 24 C -0.065 4.065 25 N -0.501 5.501 26 H 0.281 0.719 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.423 0.577 33 H 0.176 0.824 34 H 0.160 0.840 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 -0.507 -4.345 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.105 0.895 9 C 0.101 3.899 10 C -0.317 4.317 11 C -0.081 4.081 12 C -0.320 4.320 13 C 0.009 3.991 14 C -0.050 4.050 15 C -0.092 4.092 16 C -0.126 4.126 17 C 0.013 3.987 18 N -0.241 5.241 19 C 0.142 3.858 20 O -0.298 6.298 21 C -0.203 4.203 22 C -0.064 4.064 23 C -0.130 4.130 24 C -0.085 4.085 25 N -0.215 5.215 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.285 0.715 33 H 0.193 0.807 34 H 0.177 0.823 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.248 -0.460 -4.116 11.986 hybrid contribution 1.479 0.620 0.045 1.604 sum -9.769 0.159 -4.070 10.584 Atomic orbital electron populations 1.70070 1.08753 1.29244 1.29572 1.26824 0.95671 1.04114 0.92249 0.85193 0.79136 0.76135 0.79227 1.18805 1.18316 1.19203 1.19906 0.95452 0.90677 1.44286 0.89520 1.18951 0.88571 0.93372 0.89035 1.22024 1.00695 0.93863 1.15131 1.21240 0.94081 0.97641 0.95123 1.21635 0.96390 0.97400 1.16599 1.20243 0.93043 0.90453 0.95326 1.18946 0.91773 0.94235 1.00082 1.21134 0.94068 0.98042 0.95983 1.20795 0.93376 0.96881 1.01590 1.18742 0.88598 0.93796 0.97608 1.67456 1.07474 1.30212 1.18966 1.19600 0.84522 0.88059 0.93656 1.84680 1.17374 1.94156 1.33547 1.22043 0.95249 0.99564 1.03404 1.21740 0.93967 0.97417 0.93317 1.19040 0.94979 0.95552 1.03431 1.21663 0.92119 0.98900 0.95818 1.68585 1.08143 1.27336 1.17387 0.90849 0.87223 0.84509 0.84891 0.82845 0.82505 0.71502 0.80664 0.82260 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.64 11.45 21.83 0.25 -38.39 16 2 C 0.03 1.66 5.46 85.28 0.47 2.13 16 3 Si 0.98 37.15 29.57 68.60 2.03 39.18 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 6 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.47 -25.22 9.13 23.47 0.21 -25.00 16 8 H 0.09 4.36 7.86 -2.91 -0.02 4.34 16 9 C 0.23 12.40 6.51 40.26 0.26 12.67 16 10 C -0.29 -14.27 9.83 22.88 0.22 -14.04 16 11 C -0.06 -2.41 10.15 22.39 0.23 -2.18 16 12 C -0.30 -12.63 9.44 22.79 0.22 -12.41 16 13 C 0.15 7.30 6.70 42.14 0.28 7.58 16 14 C -0.05 -2.05 5.86 -20.05 -0.12 -2.17 16 15 C -0.07 -2.39 9.29 22.24 0.21 -2.19 16 16 C -0.11 -3.33 9.95 22.30 0.22 -3.11 16 17 C 0.13 4.48 6.61 40.30 0.27 4.74 16 18 N -0.52 -16.34 10.36 -301.99 -3.13 -19.47 16 19 C 0.34 8.71 7.72 85.17 0.66 9.36 16 20 O -0.49 -9.73 13.54 -88.54 -1.20 -10.93 16 21 C -0.18 -4.17 9.95 22.25 0.22 -3.94 16 22 C -0.04 -1.08 9.88 22.51 0.22 -0.86 16 23 C -0.13 -4.45 5.74 -21.27 -0.12 -4.57 16 24 C -0.07 -2.66 9.31 22.77 0.21 -2.45 16 25 N -0.50 -27.21 7.08 -178.22 -1.26 -28.47 16 26 H 0.28 12.85 8.29 -92.71 -0.77 12.09 16 27 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 28 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 29 H 0.13 4.61 6.29 -2.91 -0.02 4.59 16 30 H 0.15 4.28 6.26 -2.91 -0.02 4.27 16 31 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.42 3.80 9.06 -74.06 -0.67 3.13 16 33 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.14 6.23 7.40 -2.91 -0.02 6.21 16 Total: -1.00 -67.62 310.29 0.83 -66.79 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.48 Total: 27.74 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.66 Total: -36.45 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -4.14 Total: -86.33 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.20 Total: -10.93 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -67.62 0.83 -66.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244234024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.425 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds