Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86797 * 120.00229 * 2 1 4 4 H 1.48493 * 109.47397 * 240.00015 * 3 2 1 5 5 H 1.48500 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47267 * 119.99798 * 3 2 1 7 7 C 1.40048 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00296 * 163.15561 * 7 2 1 9 9 C 1.41524 * 119.99719 * 343.16652 * 7 2 1 10 10 C 1.41154 * 120.98822 * 336.10419 * 9 7 2 11 11 C 1.37720 * 119.07939 * 179.97438 * 10 9 7 12 12 N 1.31936 * 121.15846 * 359.97254 * 11 10 9 13 13 C 1.32795 * 122.20532 * 0.03201 * 12 11 10 14 14 C 1.48333 * 119.61735 * 179.97438 * 13 12 11 15 15 C 1.39922 * 119.92366 * 184.99683 * 14 13 12 16 16 C 1.36507 * 120.71871 * 180.02562 * 15 14 13 17 17 C 1.39224 * 120.18685 * 0.02562 * 16 15 14 18 18 N 1.37816 * 120.78724 * 180.02562 * 17 16 15 19 19 H 0.97006 * 119.49484 * 359.94752 * 18 17 16 20 20 C 1.34426 * 121.01423 * 179.97438 * 18 17 16 21 21 O 1.21875 * 119.15826 * 180.02562 * 20 18 17 22 22 C 1.41141 * 121.67987 * 0.02562 * 20 18 17 23 23 C 1.35587 * 120.21441 * 359.97438 * 22 20 18 24 24 C 1.40852 * 119.67003 * 359.97438 * 17 16 15 25 25 C 1.38791 * 119.91566 * 4.72686 * 14 13 12 26 26 C 1.38923 * 120.76814 * 359.97438 * 13 12 11 27 27 H 0.97000 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.45825 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.42124 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.64106 * 359.97438 * 15 14 13 31 31 H 1.07999 * 119.90725 * 179.97438 * 16 15 14 32 32 H 1.08002 * 119.89437 * 179.97438 * 22 20 18 33 33 H 1.07997 * 120.73918 * 180.02562 * 23 22 20 34 34 H 1.07998 * 120.31213 * 0.02562 * 25 14 13 35 35 H 1.08010 * 120.62015 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0529 -1.2330 -0.2705 9 6 1.3455 -2.4120 0.3560 10 6 0.1908 -2.3915 1.1676 11 6 -0.4227 -3.5819 1.4891 12 7 0.0501 -4.7334 1.0517 13 6 1.1323 -4.8091 0.2859 14 6 1.6143 -6.1348 -0.1732 15 6 2.8109 -6.2319 -0.8917 16 6 3.2692 -7.4434 -1.3225 17 6 2.5469 -8.6021 -1.0506 18 7 2.9984 -9.8317 -1.4790 19 1 3.8292 -9.8886 -1.9766 20 6 2.3049 -10.9535 -1.2186 21 8 2.7357 -12.0231 -1.6132 22 6 1.0905 -10.9241 -0.4998 23 6 0.5920 -9.7460 -0.0504 24 6 1.3407 -8.5184 -0.3281 25 6 0.8799 -7.2764 0.1160 26 6 1.8185 -3.6612 -0.0903 27 1 -0.4850 0.8401 0.0004 28 1 -0.2066 -1.4553 1.5308 29 1 -1.3067 -3.5726 2.1094 30 1 3.3777 -5.3385 -1.1087 31 1 4.1944 -7.5032 -1.8765 32 1 0.5567 -11.8430 -0.3071 33 1 -0.3362 -9.7138 0.5008 34 1 -0.0421 -7.2047 0.6739 35 1 2.6983 -3.7256 -0.7135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244234221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = 25.224137 kcal Electronic energy + Delta-G solvation = -21064.974211 eV Core-core repulsion = 17798.961965 eV Total energy + Delta-G solvation = -3266.012246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17464 -39.03056 -37.97738 -35.46471 -34.20910 -34.08193 -31.04569 -30.95339 -30.07033 -27.84428 -26.10878 -24.17305 -23.51160 -22.91062 -21.46775 -20.79280 -18.54129 -18.14098 -17.62069 -16.79102 -15.73286 -15.58679 -15.47103 -15.03083 -14.68980 -14.31353 -14.12633 -13.77738 -13.56606 -13.26861 -13.06157 -12.69119 -12.55632 -12.40730 -11.71666 -11.49623 -11.33216 -11.14449 -10.98693 -10.89339 -10.48385 -10.39825 -10.18252 -9.98898 -9.53499 -8.63740 -8.32655 -8.20762 -8.14845 -7.20010 -6.97067 -4.73589 0.51503 1.07423 1.86438 2.58313 2.64903 2.94048 2.94277 2.96024 3.07891 3.35004 3.75118 4.04493 4.48706 4.55913 4.56384 4.68645 4.89281 5.15290 5.17632 5.44534 5.53607 5.64810 5.77774 5.82647 5.94176 6.11471 6.15450 6.35602 6.49441 6.62702 6.64641 6.75702 6.81631 6.96900 6.99063 7.06132 7.21064 7.31928 7.70654 7.94169 7.95467 8.30076 8.58563 8.59969 9.40001 9.93718 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036878 B = 0.003131 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.079605 B = 8941.759784 C = 9617.617681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.127 3.873 10 C -0.208 4.208 11 C 0.088 3.912 12 N -0.565 5.565 13 C 0.152 3.848 14 C -0.039 4.039 15 C -0.050 4.050 16 C -0.167 4.167 17 C 0.172 3.828 18 N -0.628 5.628 19 H 0.412 0.588 20 C 0.536 3.464 21 O -0.556 6.556 22 C -0.234 4.234 23 C 0.000 4.000 24 C -0.140 4.140 25 C -0.030 4.030 26 C -0.253 4.253 27 H 0.285 0.715 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -8.418 -0.483 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.063 4.063 12 N -0.280 5.280 13 C 0.018 3.982 14 C -0.041 4.041 15 C -0.070 4.070 16 C -0.188 4.188 17 C 0.070 3.930 18 N -0.266 5.266 19 H 0.249 0.751 20 C 0.333 3.667 21 O -0.438 6.438 22 C -0.255 4.255 23 C -0.021 4.021 24 C -0.142 4.142 25 C -0.049 4.049 26 C -0.276 4.276 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.702 -9.709 -0.384 9.865 hybrid contribution 1.051 1.809 -0.495 2.150 sum 2.753 -7.901 -0.879 8.413 Atomic orbital electron populations 1.69745 1.07767 1.29915 1.33401 1.25981 0.94786 1.01650 0.91816 0.86277 0.80146 0.79680 0.80200 1.18786 1.20128 1.18602 1.19589 0.97927 0.90802 1.40294 0.89953 1.17754 0.90742 0.92009 0.87581 1.22282 1.00206 0.98249 1.02287 1.21942 0.98072 0.88380 0.97949 1.67226 1.14567 1.29337 1.16907 1.18980 0.92932 0.90291 0.95996 1.18746 0.94388 0.92678 0.98311 1.21057 0.94752 0.97364 0.93794 1.20307 1.01528 0.90794 1.06158 1.17980 0.93907 0.85199 0.95886 1.43393 1.25490 1.05796 1.51924 0.75054 1.17105 0.85765 0.82919 0.80928 1.90919 1.70565 1.28013 1.54339 1.22078 0.97894 0.99907 1.05615 1.22729 0.97110 0.90636 0.91610 1.18665 0.95687 0.94574 1.05324 1.21373 0.99216 0.89086 0.95221 1.21836 1.04460 0.92924 1.08415 0.90351 0.85525 0.85901 0.84433 0.85095 0.83188 0.83715 0.83522 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.71 10.92 55.55 0.61 -18.10 16 2 C 0.08 1.80 5.20 -17.34 -0.09 1.71 16 3 Si 0.91 17.16 29.59 -169.99 -5.03 12.13 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.46 -11.09 9.12 -37.65 -0.34 -11.43 16 8 H 0.08 1.90 7.90 -52.49 -0.41 1.49 16 9 C 0.13 3.13 5.60 -106.56 -0.60 2.53 16 10 C -0.21 -5.01 8.79 -38.66 -0.34 -5.35 16 11 C 0.09 1.96 11.15 -17.70 -0.20 1.77 16 12 N -0.57 -12.41 9.39 -9.95 -0.09 -12.50 16 13 C 0.15 3.20 6.72 -83.04 -0.56 2.65 16 14 C -0.04 -0.68 5.87 -104.91 -0.62 -1.29 16 15 C -0.05 -0.73 9.33 -39.58 -0.37 -1.10 16 16 C -0.17 -2.03 9.83 -39.84 -0.39 -2.42 16 17 C 0.17 2.20 6.65 -83.82 -0.56 1.65 16 18 N -0.63 -7.58 5.29 -12.58 -0.07 -7.64 16 19 H 0.41 4.06 8.76 -40.82 -0.36 3.70 16 20 C 0.54 7.46 7.66 -15.32 -0.12 7.35 16 21 O -0.56 -9.45 17.87 5.03 0.09 -9.36 16 22 C -0.23 -2.75 9.91 -39.43 -0.39 -3.14 16 23 C 0.00 0.00 10.10 -37.22 -0.38 -0.38 16 24 C -0.14 -1.87 5.87 -105.05 -0.62 -2.49 16 25 C -0.03 -0.45 9.36 -38.82 -0.36 -0.82 16 26 C -0.25 -5.66 9.24 -38.35 -0.35 -6.01 16 27 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 28 H 0.13 3.11 6.20 -52.49 -0.33 2.79 16 29 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 30 H 0.14 1.88 6.16 -52.48 -0.32 1.55 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.15 2.21 7.53 -52.49 -0.40 1.82 16 35 H 0.10 2.10 6.19 -52.48 -0.32 1.78 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -28.68 308.03 -9.10 -37.78 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -2.97 Total: 9.83 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -6.28 Total: -16.78 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.45 Total: -38.24 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.68 -9.10 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244234221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.999 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds