Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86797 * 120.00229 * 2 1 4 4 H 1.48493 * 109.47397 * 240.00015 * 3 2 1 5 5 H 1.48500 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47267 * 119.99798 * 3 2 1 7 7 C 1.40048 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00296 * 163.15561 * 7 2 1 9 9 C 1.41524 * 119.99719 * 343.16652 * 7 2 1 10 10 C 1.41154 * 120.98822 * 336.10419 * 9 7 2 11 11 C 1.37720 * 119.07939 * 179.97438 * 10 9 7 12 12 N 1.31936 * 121.15846 * 359.97254 * 11 10 9 13 13 C 1.32795 * 122.20532 * 0.03201 * 12 11 10 14 14 C 1.48333 * 119.61735 * 179.97438 * 13 12 11 15 15 C 1.39922 * 119.92366 * 184.99683 * 14 13 12 16 16 C 1.36507 * 120.71871 * 180.02562 * 15 14 13 17 17 C 1.39224 * 120.18685 * 0.02562 * 16 15 14 18 18 N 1.37816 * 120.78724 * 180.02562 * 17 16 15 19 19 H 0.97006 * 119.49484 * 359.94752 * 18 17 16 20 20 C 1.34426 * 121.01423 * 179.97438 * 18 17 16 21 21 O 1.21875 * 119.15826 * 180.02562 * 20 18 17 22 22 C 1.41141 * 121.67987 * 0.02562 * 20 18 17 23 23 C 1.35587 * 120.21441 * 359.97438 * 22 20 18 24 24 C 1.40852 * 119.67003 * 359.97438 * 17 16 15 25 25 C 1.38791 * 119.91566 * 4.72686 * 14 13 12 26 26 C 1.38923 * 120.76814 * 359.97438 * 13 12 11 27 27 H 0.97000 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.45825 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.42124 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.64106 * 359.97438 * 15 14 13 31 31 H 1.07999 * 119.90725 * 179.97438 * 16 15 14 32 32 H 1.08002 * 119.89437 * 179.97438 * 22 20 18 33 33 H 1.07997 * 120.73918 * 180.02562 * 23 22 20 34 34 H 1.07998 * 120.31213 * 0.02562 * 25 14 13 35 35 H 1.08010 * 120.62015 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0529 -1.2330 -0.2705 9 6 1.3455 -2.4120 0.3560 10 6 0.1908 -2.3915 1.1676 11 6 -0.4227 -3.5819 1.4891 12 7 0.0501 -4.7334 1.0517 13 6 1.1323 -4.8091 0.2859 14 6 1.6143 -6.1348 -0.1732 15 6 2.8109 -6.2319 -0.8917 16 6 3.2692 -7.4434 -1.3225 17 6 2.5469 -8.6021 -1.0506 18 7 2.9984 -9.8317 -1.4790 19 1 3.8292 -9.8886 -1.9766 20 6 2.3049 -10.9535 -1.2186 21 8 2.7357 -12.0231 -1.6132 22 6 1.0905 -10.9241 -0.4998 23 6 0.5920 -9.7460 -0.0504 24 6 1.3407 -8.5184 -0.3281 25 6 0.8799 -7.2764 0.1160 26 6 1.8185 -3.6612 -0.0903 27 1 -0.4850 0.8401 0.0004 28 1 -0.2066 -1.4553 1.5308 29 1 -1.3067 -3.5726 2.1094 30 1 3.3777 -5.3385 -1.1087 31 1 4.1944 -7.5032 -1.8765 32 1 0.5567 -11.8430 -0.3071 33 1 -0.3362 -9.7138 0.5008 34 1 -0.0421 -7.2047 0.6739 35 1 2.6983 -3.7256 -0.7135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244234221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = 9.252099 kcal Electronic energy + Delta-G solvation = -21065.666810 eV Core-core repulsion = 17798.961965 eV Total energy + Delta-G solvation = -3266.704845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23853 -40.47321 -39.35269 -36.70679 -35.86901 -35.08020 -32.69007 -32.43788 -31.19922 -29.23733 -27.86055 -25.22201 -24.76958 -24.13804 -23.01089 -22.31614 -19.82127 -19.32297 -18.89944 -18.07803 -17.28343 -16.73328 -16.54579 -16.49841 -16.16906 -15.78941 -15.45147 -14.93716 -14.85769 -14.64472 -14.37406 -14.08954 -13.90000 -13.68757 -13.25679 -12.96670 -12.88914 -12.56243 -12.23092 -12.06472 -11.95920 -11.71228 -11.52254 -11.28484 -11.22472 -10.00837 -9.91580 -9.88749 -9.47898 -8.74443 -8.57484 -6.56489 -0.48377 -0.17437 0.82799 0.92707 1.09068 1.39912 1.51005 1.57304 1.93519 2.13799 2.18359 2.73455 3.00669 3.47150 3.55311 3.59972 3.72472 3.78318 4.05029 4.22013 4.29122 4.40986 4.65343 4.74088 4.78348 4.89529 4.97769 5.01143 5.10379 5.17738 5.22939 5.29417 5.45959 5.50584 5.62606 5.72281 5.74695 5.92435 6.00770 6.20383 6.51909 6.79827 6.81147 6.91491 7.67094 8.23703 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036878 B = 0.003131 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.079605 B = 8941.759784 C = 9617.617681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.236 4.236 11 C 0.087 3.913 12 N -0.571 5.571 13 C 0.154 3.846 14 C -0.073 4.073 15 C -0.053 4.053 16 C -0.152 4.152 17 C 0.176 3.824 18 N -0.618 5.618 19 H 0.423 0.577 20 C 0.529 3.471 21 O -0.592 6.592 22 C -0.237 4.237 23 C 0.011 3.989 24 C -0.146 4.146 25 C -0.026 4.026 26 C -0.273 4.273 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.145 0.855 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -9.383 -0.871 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.103 0.897 9 C 0.092 3.908 10 C -0.259 4.259 11 C -0.065 4.065 12 N -0.286 5.286 13 C 0.021 3.979 14 C -0.075 4.075 15 C -0.073 4.073 16 C -0.172 4.172 17 C 0.073 3.927 18 N -0.255 5.255 19 H 0.262 0.738 20 C 0.327 3.673 21 O -0.477 6.477 22 C -0.258 4.258 23 C -0.009 4.009 24 C -0.148 4.148 25 C -0.045 4.045 26 C -0.296 4.296 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.185 0.815 32 H 0.187 0.813 33 H 0.194 0.806 34 H 0.163 0.837 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.404 -10.678 -0.779 10.973 hybrid contribution 0.838 1.926 -0.405 2.139 sum 3.242 -8.752 -1.184 9.408 Atomic orbital electron populations 1.69800 1.09169 1.31174 1.33780 1.26828 0.95490 1.04709 0.90807 0.85195 0.78777 0.75257 0.80221 1.18141 1.19229 1.18395 1.19891 0.98345 0.91831 1.41776 0.89663 1.18157 0.91343 0.93251 0.88045 1.22258 1.01237 0.98454 1.03946 1.22322 0.98505 0.88017 0.97665 1.67361 1.15067 1.28858 1.17305 1.19547 0.91932 0.91997 0.94434 1.18705 0.96409 0.91327 1.01032 1.21111 0.93978 0.98576 0.93617 1.20581 1.02265 0.89401 1.04949 1.18127 0.93752 0.85577 0.95212 1.43315 1.25731 1.05157 1.51327 0.73762 1.17498 0.86365 0.82653 0.80776 1.90909 1.71572 1.29217 1.55975 1.22240 0.97219 1.01027 1.05297 1.22965 0.97752 0.89161 0.91045 1.18831 0.96168 0.94739 1.05104 1.21326 0.98937 0.89241 0.95005 1.22058 1.05485 0.92746 1.09264 0.89660 0.86836 0.83476 0.84026 0.81537 0.81276 0.80601 0.83706 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.86 10.92 21.84 0.24 -39.63 16 2 C 0.04 1.83 5.20 85.30 0.44 2.28 16 3 Si 0.99 35.23 29.59 68.60 2.03 37.26 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 6 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.49 -24.47 9.12 23.52 0.21 -24.25 16 8 H 0.09 4.04 7.90 -2.91 -0.02 4.02 16 9 C 0.10 5.09 5.60 -21.12 -0.12 4.97 16 10 C -0.24 -11.85 8.79 22.86 0.20 -11.64 16 11 C 0.09 3.93 11.15 84.55 0.94 4.88 16 12 N -0.57 -25.21 9.39 -185.38 -1.74 -26.95 16 13 C 0.15 6.58 6.72 41.85 0.28 6.86 16 14 C -0.07 -2.45 5.87 -20.05 -0.12 -2.57 16 15 C -0.05 -1.45 9.33 22.27 0.21 -1.25 16 16 C -0.15 -3.23 9.83 22.10 0.22 -3.01 16 17 C 0.18 4.00 6.65 39.08 0.26 4.26 16 18 N -0.62 -13.20 5.29 -312.05 -1.65 -14.86 16 19 H 0.42 7.12 8.76 -92.70 -0.81 6.31 16 20 C 0.53 13.52 7.66 85.01 0.65 14.17 16 21 O -0.59 -19.18 17.87 -4.91 -0.09 -19.27 16 22 C -0.24 -4.89 9.91 22.37 0.22 -4.66 16 23 C 0.01 0.21 10.10 23.80 0.24 0.45 16 24 C -0.15 -3.53 5.87 -20.14 -0.12 -3.64 16 25 C -0.03 -0.75 9.36 22.76 0.21 -0.54 16 26 C -0.27 -12.48 9.24 23.07 0.21 -12.26 16 27 H 0.29 12.90 8.29 -92.71 -0.77 12.13 16 28 H 0.11 5.86 6.20 -2.91 -0.02 5.85 16 29 H 0.15 5.71 8.06 -2.91 -0.02 5.69 16 30 H 0.14 3.70 6.16 -2.91 -0.02 3.68 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.15 4.18 7.53 -2.91 -0.02 4.16 16 35 H 0.12 4.90 6.19 -2.91 -0.02 4.88 16 Total: -1.00 -63.51 308.03 3.09 -60.42 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.35 Total: 28.98 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.95 Total: -25.97 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.15 Total: -81.43 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.09 Total: -19.27 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -63.51 3.09 -60.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244234221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.677 kcal (2) G-P(sol) polarization free energy of solvation -63.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds