Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48501 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46935 * 300.00114 * 3 2 1 6 6 H 1.48491 * 109.47241 * 59.99999 * 3 2 1 7 7 C 1.39930 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00291 * 163.63326 * 7 2 1 9 9 C 1.41438 * 120.00186 * 343.62753 * 7 2 1 10 10 C 1.40818 * 120.60333 * 155.74264 * 9 7 2 11 11 N 1.31492 * 120.66766 * 179.97438 * 10 9 7 12 12 C 1.31941 * 122.12696 * 359.76684 * 11 10 9 13 13 C 1.39696 * 121.14325 * 0.50365 * 12 11 10 14 14 C 1.48377 * 120.40785 * 179.76553 * 13 12 11 15 15 C 1.40366 * 119.77750 * 179.71997 * 14 13 12 16 16 C 1.35835 * 120.91267 * 180.02562 * 15 14 13 17 17 C 1.40653 * 120.08182 * 0.02562 * 16 15 14 18 18 N 1.33784 * 120.78883 * 180.24884 * 17 16 15 19 19 C 1.31541 * 121.32311 * 180.27526 * 18 17 16 20 20 O 1.35569 * 119.19726 * 179.71644 * 19 18 17 21 21 C 1.40033 * 121.60404 * 359.43484 * 19 18 17 22 22 C 1.36298 * 119.86863 * 0.28168 * 21 19 18 23 23 C 1.41032 * 118.26579 * 359.97438 * 22 21 19 24 24 C 1.38281 * 119.78557 * 359.69447 * 14 13 12 25 25 C 1.39194 * 119.17710 * 359.49281 * 13 12 11 26 26 H 0.96995 * 119.99843 * 359.97438 * 1 2 3 27 27 H 1.07990 * 119.66274 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.43150 * 180.24351 * 12 11 10 29 29 H 1.08000 * 119.54496 * 0.02715 * 15 14 13 30 30 H 1.08004 * 119.95723 * 179.97438 * 16 15 14 31 31 H 0.96702 * 113.99978 * 269.72350 * 20 19 18 32 32 H 1.08005 * 120.06744 * 180.25460 * 21 19 18 33 33 H 1.07999 * 120.86543 * 179.97438 * 22 21 19 34 34 H 1.08003 * 120.27752 * 0.02562 * 24 14 13 35 35 H 1.07995 * 120.95552 * 180.27484 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0551 -1.2308 -0.2641 9 6 1.3437 -2.4121 0.3442 10 6 1.8231 -3.6540 -0.1149 11 7 1.2069 -4.7706 0.2053 12 6 0.1279 -4.7838 0.9646 13 6 -0.4212 -3.5988 1.4602 14 6 -1.6381 -3.6322 2.3085 15 6 -2.1754 -2.4339 2.8043 16 6 -3.2881 -2.4377 3.5833 17 6 -3.9194 -3.6528 3.9050 18 7 -5.0188 -3.6726 4.6670 19 6 -5.6146 -4.8032 4.9787 20 8 -6.7231 -4.7735 5.7586 21 6 -5.1350 -6.0362 4.5197 22 6 -4.0216 -6.0819 3.7348 23 6 -3.3843 -4.8669 3.4084 24 6 -2.2357 -4.8434 2.6050 25 6 0.1906 -2.3868 1.1531 26 1 -0.4850 0.8400 0.0004 27 1 2.7057 -3.6897 -0.7361 28 1 -0.3412 -5.7267 1.2037 29 1 -1.6974 -1.4960 2.5630 30 1 -3.6881 -1.5066 3.9569 31 1 -6.5393 -4.8367 6.7059 32 1 -5.6461 -6.9492 4.7876 33 1 -3.6376 -7.0239 3.3723 34 1 -1.8202 -5.7638 2.2222 35 1 -0.2070 -1.4540 1.5245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244236371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = 34.167085 kcal Electronic energy + Delta-G solvation = -21279.251621 eV Core-core repulsion = 18013.627170 eV Total energy + Delta-G solvation = -3265.624450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79029 -38.83991 -37.87370 -35.80865 -34.22813 -33.46413 -31.60921 -30.58927 -29.97089 -27.97682 -25.82348 -24.01845 -23.66495 -22.42562 -21.30286 -20.88080 -18.92462 -17.85498 -17.51486 -16.67262 -16.12145 -15.81272 -15.29549 -14.95084 -14.57887 -14.09816 -13.90507 -13.65472 -13.46331 -13.11306 -13.01613 -12.60354 -12.09711 -11.93083 -11.75596 -11.44415 -11.41136 -11.31968 -11.21739 -10.89335 -10.63206 -10.53611 -9.98713 -9.52546 -9.41765 -9.01506 -8.37596 -8.24929 -7.98044 -7.27620 -6.96419 -4.63440 0.42489 0.82680 2.00604 2.40530 2.67674 2.96301 3.01016 3.07353 3.23547 3.60928 3.76137 4.22250 4.51150 4.56121 4.73009 4.85954 5.00113 5.22974 5.34560 5.47890 5.49947 5.51706 5.85018 5.87727 5.89581 6.10742 6.20679 6.34820 6.47339 6.50602 6.56542 6.63893 6.91936 6.94915 7.03022 7.10735 7.39241 7.50912 7.69460 7.75721 7.93523 8.26494 8.52420 8.55105 9.46118 9.92967 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.003830 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.065934 B = 7308.633600 C = 8456.615593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.060 3.940 10 C -0.012 4.012 11 N -0.469 5.469 12 C -0.022 4.022 13 C -0.100 4.100 14 C 0.003 3.997 15 C -0.078 4.078 16 C -0.101 4.101 17 C 0.138 3.862 18 N -0.491 5.491 19 C 0.322 3.678 20 O -0.486 6.486 21 C -0.191 4.191 22 C -0.044 4.044 23 C -0.100 4.100 24 C -0.108 4.108 25 C -0.113 4.113 26 H 0.285 0.715 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.398 0.602 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 -5.283 8.617 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.056 3.944 10 C -0.173 4.173 11 N -0.176 5.176 12 C -0.179 4.179 13 C -0.102 4.102 14 C 0.002 3.998 15 C -0.098 4.098 16 C -0.120 4.120 17 C 0.017 3.983 18 N -0.210 5.210 19 C 0.128 3.872 20 O -0.292 6.292 21 C -0.212 4.212 22 C -0.069 4.069 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.255 0.745 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.596 -5.038 8.050 12.161 hybrid contribution 0.321 0.833 0.412 0.983 sum -7.275 -4.205 8.462 11.926 Atomic orbital electron populations 1.69770 1.07685 1.29764 1.34297 1.25982 0.94839 1.01712 0.91943 0.86169 0.80987 0.80359 0.78806 1.18174 1.19759 1.19492 1.19615 0.97871 0.90590 1.39580 0.89651 1.18487 0.92157 0.93830 0.89952 1.22599 1.02248 0.88088 1.04387 1.66955 1.07773 1.31695 1.11197 1.21780 0.96837 0.95374 1.03956 1.19429 0.94972 0.95746 1.00064 1.19043 0.93984 0.92381 0.94356 1.21228 0.94724 0.99079 0.94768 1.20654 0.95791 0.96356 0.99163 1.18502 0.91192 0.93201 0.95452 1.67410 1.08313 1.30229 1.15089 1.19257 0.86500 0.87988 0.93463 1.84744 1.27250 1.95756 1.21492 1.21722 0.98399 0.98375 1.02728 1.21402 0.93530 0.97758 0.94243 1.18762 0.97598 0.93720 1.00112 1.21254 0.94567 0.98439 0.98436 1.21882 0.97583 0.96000 0.98322 0.90415 0.85412 0.85989 0.84215 0.84839 0.74492 0.84377 0.83985 0.84741 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.67 10.90 55.55 0.61 -18.06 16 2 C 0.07 1.70 5.20 -17.34 -0.09 1.61 16 3 Si 0.91 17.23 29.59 -169.99 -5.03 12.20 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -10.89 9.09 -37.73 -0.34 -11.23 16 8 H 0.09 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.06 1.50 5.59 -106.71 -0.60 0.90 16 10 C -0.01 -0.29 10.96 -16.72 -0.18 -0.47 16 11 N -0.47 -11.09 10.32 -12.28 -0.13 -11.21 16 12 C -0.02 -0.47 10.59 -16.96 -0.18 -0.65 16 13 C -0.10 -2.17 5.88 -104.82 -0.62 -2.79 16 14 C 0.00 0.06 5.87 -104.91 -0.62 -0.56 16 15 C -0.08 -1.38 9.33 -39.64 -0.37 -1.75 16 16 C -0.10 -1.65 9.95 -39.53 -0.39 -2.04 16 17 C 0.14 2.27 6.60 -84.80 -0.56 1.71 16 18 N -0.49 -7.90 10.36 -11.01 -0.11 -8.02 16 19 C 0.32 4.33 7.72 -17.00 -0.13 4.20 16 20 O -0.49 -5.39 13.54 -18.40 -0.25 -5.64 16 21 C -0.19 -2.17 9.95 -39.61 -0.39 -2.57 16 22 C -0.04 -0.53 9.88 -39.22 -0.39 -0.92 16 23 C -0.10 -1.53 5.74 -106.80 -0.61 -2.14 16 24 C -0.11 -1.76 9.18 -38.84 -0.36 -2.11 16 25 C -0.11 -2.69 8.15 -38.23 -0.31 -3.00 16 26 H 0.28 6.09 8.30 -40.82 -0.34 5.76 16 27 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 28 H 0.12 2.29 6.17 -52.49 -0.32 1.97 16 29 H 0.14 2.49 6.20 -52.49 -0.33 2.16 16 30 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.40 2.28 9.06 45.56 0.41 2.70 16 32 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.93 6.17 -52.48 -0.32 1.61 16 35 H 0.13 3.19 4.41 -52.49 -0.23 2.95 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -29.01 306.16 -8.48 -37.48 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -2.03 Total: 10.45 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -6.14 Total: -21.81 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.36 Total: -37.29 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.25 Total: -5.64 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.01 -8.48 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244236371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.649 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds