Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48501 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46935 * 300.00114 * 3 2 1 6 6 H 1.48491 * 109.47241 * 59.99999 * 3 2 1 7 7 C 1.39930 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00291 * 163.63326 * 7 2 1 9 9 C 1.41438 * 120.00186 * 343.62753 * 7 2 1 10 10 C 1.40818 * 120.60333 * 155.74264 * 9 7 2 11 11 N 1.31492 * 120.66766 * 179.97438 * 10 9 7 12 12 C 1.31941 * 122.12696 * 359.76684 * 11 10 9 13 13 C 1.39696 * 121.14325 * 0.50365 * 12 11 10 14 14 C 1.48377 * 120.40785 * 179.76553 * 13 12 11 15 15 C 1.40366 * 119.77750 * 179.71997 * 14 13 12 16 16 C 1.35835 * 120.91267 * 180.02562 * 15 14 13 17 17 C 1.40653 * 120.08182 * 0.02562 * 16 15 14 18 18 N 1.33784 * 120.78883 * 180.24884 * 17 16 15 19 19 C 1.31541 * 121.32311 * 180.27526 * 18 17 16 20 20 O 1.35569 * 119.19726 * 179.71644 * 19 18 17 21 21 C 1.40033 * 121.60404 * 359.43484 * 19 18 17 22 22 C 1.36298 * 119.86863 * 0.28168 * 21 19 18 23 23 C 1.41032 * 118.26579 * 359.97438 * 22 21 19 24 24 C 1.38281 * 119.78557 * 359.69447 * 14 13 12 25 25 C 1.39194 * 119.17710 * 359.49281 * 13 12 11 26 26 H 0.96995 * 119.99843 * 359.97438 * 1 2 3 27 27 H 1.07990 * 119.66274 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.43150 * 180.24351 * 12 11 10 29 29 H 1.08000 * 119.54496 * 0.02715 * 15 14 13 30 30 H 1.08004 * 119.95723 * 179.97438 * 16 15 14 31 31 H 0.96702 * 113.99978 * 269.72350 * 20 19 18 32 32 H 1.08005 * 120.06744 * 180.25460 * 21 19 18 33 33 H 1.07999 * 120.86543 * 179.97438 * 22 21 19 34 34 H 1.08003 * 120.27752 * 0.02562 * 24 14 13 35 35 H 1.07995 * 120.95552 * 180.27484 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0551 -1.2308 -0.2641 9 6 1.3437 -2.4121 0.3442 10 6 1.8231 -3.6540 -0.1149 11 7 1.2069 -4.7706 0.2053 12 6 0.1279 -4.7838 0.9646 13 6 -0.4212 -3.5988 1.4602 14 6 -1.6381 -3.6322 2.3085 15 6 -2.1754 -2.4339 2.8043 16 6 -3.2881 -2.4377 3.5833 17 6 -3.9194 -3.6528 3.9050 18 7 -5.0188 -3.6726 4.6670 19 6 -5.6146 -4.8032 4.9787 20 8 -6.7231 -4.7735 5.7586 21 6 -5.1350 -6.0362 4.5197 22 6 -4.0216 -6.0819 3.7348 23 6 -3.3843 -4.8669 3.4084 24 6 -2.2357 -4.8434 2.6050 25 6 0.1906 -2.3868 1.1531 26 1 -0.4850 0.8400 0.0004 27 1 2.7057 -3.6897 -0.7361 28 1 -0.3412 -5.7267 1.2037 29 1 -1.6974 -1.4960 2.5630 30 1 -3.6881 -1.5066 3.9569 31 1 -6.5393 -4.8367 6.7059 32 1 -5.6461 -6.9492 4.7876 33 1 -3.6376 -7.0239 3.3723 34 1 -1.8202 -5.7638 2.2222 35 1 -0.2070 -1.4540 1.5245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244236371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = 14.651811 kcal Electronic energy + Delta-G solvation = -21280.097867 eV Core-core repulsion = 18013.627170 eV Total energy + Delta-G solvation = -3266.470696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92168 -40.39082 -39.08938 -36.96590 -35.97967 -34.58448 -33.09695 -32.30325 -31.18800 -29.37443 -27.58273 -25.20363 -25.00087 -23.82842 -22.75024 -22.41923 -20.01331 -19.22991 -18.93172 -18.02834 -17.45004 -17.16439 -16.89137 -16.36088 -15.85803 -15.51960 -15.15730 -14.87001 -14.77037 -14.45264 -14.28793 -14.20402 -13.58096 -13.37723 -13.16070 -13.02057 -12.90309 -12.58427 -12.54544 -12.38377 -12.13221 -11.67564 -11.60751 -11.23184 -10.52070 -10.44567 -10.03837 -9.77373 -9.55090 -8.80780 -8.63405 -6.47627 -0.73649 -0.33311 0.63945 0.95055 1.10529 1.39795 1.49497 1.54745 1.95456 2.17745 2.59762 2.71730 3.06578 3.52193 3.59997 3.71868 3.73035 3.86270 4.02924 4.09885 4.27181 4.31266 4.46006 4.61008 4.74841 4.77511 4.80573 4.92636 5.07606 5.10634 5.14940 5.20257 5.35390 5.44960 5.48735 5.76246 5.83116 5.89690 6.01145 6.46356 6.61687 6.73280 6.74935 6.88742 7.65874 8.22423 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.003830 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.065934 B = 7308.633600 C = 8456.615593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.479 4.479 8 H 0.086 0.914 9 C 0.036 3.964 10 C -0.036 4.036 11 N -0.479 5.479 12 C -0.029 4.029 13 C -0.091 4.091 14 C -0.036 4.036 15 C -0.088 4.088 16 C -0.105 4.105 17 C 0.128 3.872 18 N -0.530 5.530 19 C 0.332 3.668 20 O -0.491 6.491 21 C -0.181 4.181 22 C -0.033 4.033 23 C -0.118 4.118 24 C -0.084 4.084 25 C -0.139 4.139 26 H 0.292 0.708 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.423 0.577 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -7.126 9.983 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.508 4.508 8 H 0.104 0.896 9 C 0.032 3.968 10 C -0.197 4.197 11 N -0.186 5.186 12 C -0.187 4.187 13 C -0.093 4.093 14 C -0.037 4.037 15 C -0.107 4.107 16 C -0.124 4.124 17 C 0.007 3.993 18 N -0.250 5.250 19 C 0.138 3.862 20 O -0.301 6.301 21 C -0.201 4.201 22 C -0.058 4.058 23 C -0.120 4.120 24 C -0.102 4.102 25 C -0.164 4.164 26 H 0.103 0.897 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.285 0.715 32 H 0.197 0.803 33 H 0.199 0.801 34 H 0.174 0.826 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.357 -6.901 9.437 14.975 hybrid contribution 0.542 1.213 0.192 1.343 sum -8.815 -5.687 9.630 14.240 Atomic orbital electron populations 1.69820 1.09003 1.31035 1.34449 1.26789 0.95526 1.04603 0.90951 0.85102 0.79530 0.75866 0.78981 1.17914 1.19125 1.18838 1.19865 0.98190 0.91554 1.41200 0.89560 1.18807 0.92933 0.94525 0.90525 1.22738 1.03147 0.88234 1.05553 1.66975 1.08475 1.31457 1.11704 1.22343 0.96378 0.96768 1.03187 1.19686 0.95479 0.94942 0.99207 1.18930 0.94251 0.93937 0.96571 1.21064 0.95465 0.98402 0.95801 1.20718 0.95413 0.97296 0.98984 1.18627 0.91532 0.93570 0.95543 1.67401 1.09052 1.32032 1.16528 1.19711 0.85827 0.88209 0.92479 1.84690 1.26374 1.95692 1.23359 1.22112 0.97858 0.98920 1.01242 1.21835 0.93053 0.97798 0.93154 1.18964 0.97700 0.94844 1.00455 1.21467 0.93930 0.98021 0.96787 1.21926 0.98243 0.96802 0.99444 0.89672 0.84695 0.82604 0.85791 0.84091 0.71546 0.80329 0.80136 0.82574 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.18 10.90 21.82 0.24 -39.95 16 2 C 0.04 1.78 5.20 85.25 0.44 2.22 16 3 Si 0.98 35.96 29.59 68.60 2.03 37.99 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.48 -24.41 9.09 23.47 0.21 -24.19 16 8 H 0.09 4.20 7.90 -2.91 -0.02 4.17 16 9 C 0.04 1.90 5.59 -21.21 -0.12 1.78 16 10 C -0.04 -1.82 10.96 85.38 0.94 -0.89 16 11 N -0.48 -22.93 10.32 -192.76 -1.99 -24.92 16 12 C -0.03 -1.25 10.59 85.03 0.90 -0.35 16 13 C -0.09 -4.07 5.88 -19.99 -0.12 -4.18 16 14 C -0.04 -1.36 5.87 -20.05 -0.12 -1.48 16 15 C -0.09 -3.22 9.33 22.23 0.21 -3.02 16 16 C -0.11 -3.51 9.95 22.30 0.22 -3.28 16 17 C 0.13 4.07 6.60 40.28 0.27 4.34 16 18 N -0.53 -16.08 10.36 -302.02 -3.13 -19.21 16 19 C 0.33 7.76 7.72 85.17 0.66 8.42 16 20 O -0.49 -9.06 13.54 -88.76 -1.20 -10.27 16 21 C -0.18 -3.19 9.95 22.25 0.22 -2.96 16 22 C -0.03 -0.65 9.88 22.50 0.22 -0.42 16 23 C -0.12 -3.29 5.74 -21.27 -0.12 -3.42 16 24 C -0.08 -2.55 9.18 22.75 0.21 -2.35 16 25 C -0.14 -6.96 8.15 23.15 0.19 -6.77 16 26 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 27 H 0.14 6.27 8.06 -2.92 -0.02 6.25 16 28 H 0.16 5.52 6.17 -2.91 -0.02 5.50 16 29 H 0.12 4.82 6.20 -2.91 -0.02 4.80 16 30 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.42 3.21 9.06 -74.06 -0.67 2.54 16 32 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.16 3.94 6.17 -2.91 -0.02 3.92 16 35 H 0.13 6.42 4.41 -2.91 -0.01 6.40 16 Total: -1.00 -65.48 306.16 0.65 -64.83 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.50 Total: 28.08 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 4.21 Total: -36.56 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -4.88 Total: -84.08 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.20 Total: -10.27 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -65.48 0.65 -64.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244236371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.478 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds