Wall clock time and date at job start Tue Mar 31 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47341 * 270.00300 * 3 2 1 5 5 H 1.48501 * 109.46622 * 30.00641 * 3 2 1 6 6 H 1.48506 * 109.47049 * 150.00261 * 3 2 1 7 7 C 1.40056 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99943 * 168.71723 * 7 2 1 9 9 C 1.40858 * 120.00238 * 348.71142 * 7 2 1 10 10 C 1.41123 * 120.71846 * 331.29723 * 9 7 2 11 11 C 1.36872 * 118.39647 * 180.21595 * 10 9 7 12 12 C 1.38881 * 119.80874 * 359.53282 * 11 10 9 13 13 N 1.31728 * 121.51052 * 0.28159 * 12 11 10 14 14 C 1.32618 * 121.71464 * 359.96749 * 13 12 11 15 15 C 1.47741 * 119.99844 * 180.02562 * 14 13 12 16 16 C 1.40241 * 119.95328 * 136.17327 * 15 14 13 17 17 C 1.36371 * 120.68284 * 179.97438 * 16 15 14 18 18 C 1.39351 * 120.23586 * 0.02562 * 17 16 15 19 19 N 1.37709 * 120.74855 * 179.97438 * 18 17 16 20 20 H 0.97001 * 119.48144 * 0.02562 * 19 18 17 21 21 C 1.34413 * 121.03822 * 180.02562 * 19 18 17 22 22 O 1.21868 * 119.15262 * 180.02562 * 21 19 18 23 23 C 1.41157 * 121.69677 * 359.96361 * 21 19 18 24 24 C 1.35579 * 120.20141 * 0.03730 * 23 21 19 25 25 C 1.40933 * 119.71628 * 359.97438 * 18 17 16 26 26 C 1.39171 * 119.95212 * 315.90596 * 15 14 13 27 27 H 0.96992 * 119.99895 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.80534 * 0.02562 * 10 9 7 29 29 H 1.08004 * 120.09905 * 179.80961 * 11 10 9 30 30 H 1.08001 * 119.24385 * 180.25449 * 12 11 10 31 31 H 1.08001 * 119.65707 * 359.96326 * 16 15 14 32 32 H 1.07999 * 119.87894 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.90204 * 180.02562 * 23 21 19 34 34 H 1.08004 * 120.74766 * 180.02562 * 24 23 21 35 35 H 1.08008 * 120.32544 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0465 -1.4000 5 1 1.4393 2.6526 0.7002 6 1 3.5395 1.4401 0.7000 7 6 2.0081 -1.2129 -0.0005 8 1 3.0725 -1.2219 -0.1835 9 6 1.3243 -2.4211 0.2377 10 6 0.1605 -2.4455 1.0355 11 6 -0.4637 -3.6464 1.2396 12 6 0.0486 -4.7985 0.6573 13 7 1.1332 -4.7687 -0.0896 14 6 1.7883 -3.6394 -0.3228 15 6 3.0007 -3.6495 -1.1670 16 6 3.1861 -2.6549 -2.1381 17 6 4.2998 -2.6497 -2.9251 18 6 5.2710 -3.6374 -2.7731 19 7 6.3995 -3.6426 -3.5624 20 1 6.5177 -2.9496 -4.2308 21 6 7.3397 -4.5927 -3.4212 22 8 8.3250 -4.5640 -4.1377 23 6 7.2157 -5.6222 -2.4634 24 6 6.1286 -5.6743 -1.6549 25 6 5.0984 -4.6434 -1.8013 26 6 3.9599 -4.6429 -0.9935 27 1 -0.4849 0.8400 0.0004 28 1 -0.2267 -1.5390 1.4769 29 1 -1.3546 -3.6973 1.8480 30 1 -0.4536 -5.7406 0.8210 31 1 2.4390 -1.8853 -2.2642 32 1 4.4292 -1.8778 -3.6692 33 1 7.9891 -6.3708 -2.3745 34 1 6.0250 -6.4578 -0.9188 35 1 3.8228 -5.4084 -0.2440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244236548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:46 Heat of formation + Delta-G solvation = 10.764751 kcal Electronic energy + Delta-G solvation = -21763.810666 eV Core-core repulsion = 18497.171414 eV Total energy + Delta-G solvation = -3266.639252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16489 -40.48266 -39.26481 -36.50400 -35.95744 -35.01142 -32.75227 -32.39239 -31.12570 -29.55136 -27.46868 -25.04886 -24.67913 -24.01923 -23.10764 -22.24328 -19.52123 -19.28074 -18.96449 -18.24803 -17.40385 -16.88958 -16.49719 -16.33632 -16.22573 -15.69823 -15.49036 -14.88015 -14.83095 -14.33703 -14.14745 -13.94943 -13.77586 -13.64199 -13.21899 -13.17820 -12.81023 -12.69367 -12.20521 -12.10434 -11.94369 -11.63892 -11.34829 -11.25336 -11.16457 -10.18485 -9.92320 -9.69927 -9.36714 -8.80701 -8.58869 -6.39469 -0.40813 0.04448 0.83834 0.93195 1.12370 1.41126 1.49776 1.54247 1.99839 2.17277 2.18357 2.75311 3.01124 3.55400 3.65756 3.69911 3.78353 3.85473 4.21586 4.31664 4.44421 4.52784 4.63042 4.75105 4.80322 4.87371 4.96997 5.03980 5.17362 5.19066 5.24927 5.31716 5.50799 5.66520 5.75392 5.81372 5.88628 6.00755 6.05381 6.11289 6.52236 6.76432 6.81720 6.96013 7.71113 8.24853 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.005199 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.058199 B = 5384.068268 C = 6841.045958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.041 3.959 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.088 0.912 9 C 0.058 3.942 10 C -0.151 4.151 11 C -0.151 4.151 12 C -0.036 4.036 13 N -0.467 5.467 14 C 0.003 3.997 15 C -0.031 4.031 16 C -0.044 4.044 17 C -0.160 4.160 18 C 0.166 3.834 19 N -0.617 5.617 20 H 0.420 0.580 21 C 0.527 3.473 22 O -0.596 6.596 23 C -0.240 4.240 24 C 0.013 3.987 25 C -0.142 4.142 26 C -0.048 4.048 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.128 0.872 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -2.891 -1.402 6.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.106 0.894 9 C 0.054 3.946 10 C -0.177 4.177 11 C -0.171 4.171 12 C -0.197 4.197 13 N -0.175 5.175 14 C -0.134 4.134 15 C -0.032 4.032 16 C -0.064 4.064 17 C -0.181 4.181 18 C 0.064 3.936 19 N -0.255 5.255 20 H 0.259 0.741 21 C 0.326 3.674 22 O -0.481 6.481 23 C -0.260 4.260 24 C -0.008 4.008 25 C -0.145 4.145 26 C -0.067 4.067 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.188 0.812 34 H 0.195 0.805 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.258 -3.634 -2.074 7.528 hybrid contribution -0.666 1.992 0.285 2.120 sum 5.592 -1.642 -1.789 6.097 Atomic orbital electron populations 1.69784 1.08904 1.30969 1.34594 1.26690 0.95392 1.04146 0.91333 0.85314 0.79163 0.76311 0.79876 1.18220 1.19453 1.18353 1.19687 0.96491 0.90498 1.41937 0.89391 1.18674 0.92559 0.93598 0.89783 1.21492 0.98705 0.97287 1.00245 1.21741 1.00457 0.93903 1.00961 1.22226 0.96534 0.98057 1.02836 1.67121 1.07557 1.29442 1.13350 1.19844 0.99497 0.89642 1.04460 1.18423 0.93197 0.95869 0.95737 1.21101 0.96778 0.96609 0.91914 1.20511 0.93931 1.00065 1.03544 1.18041 0.87525 0.95878 0.92143 1.43266 1.18155 1.28775 1.35265 0.74064 1.17502 0.81897 0.82902 0.85083 1.90890 1.31213 1.77285 1.48750 1.22216 1.02520 1.01674 0.99583 1.22960 0.88981 0.94153 0.94679 1.18759 0.97976 0.98025 0.99717 1.21278 0.90728 0.97289 0.97437 0.89747 0.86675 0.85521 0.83087 0.85440 0.82562 0.81223 0.80534 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.98 10.90 21.85 0.24 -37.74 16 2 C 0.04 1.81 5.26 85.29 0.45 2.26 16 3 Si 0.97 33.92 29.58 68.60 2.03 35.94 16 4 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.46 -21.29 6.69 23.35 0.16 -21.13 16 8 H 0.09 3.97 6.50 -2.91 -0.02 3.95 16 9 C 0.06 2.83 5.54 -21.02 -0.12 2.72 16 10 C -0.15 -7.23 8.71 22.66 0.20 -7.03 16 11 C -0.15 -6.37 10.03 22.10 0.22 -6.15 16 12 C -0.04 -1.50 11.16 84.86 0.95 -0.56 16 13 N -0.47 -20.92 10.15 -182.94 -1.86 -22.78 16 14 C 0.00 0.16 6.42 42.45 0.27 0.43 16 15 C -0.03 -1.20 5.25 -20.05 -0.11 -1.30 16 16 C -0.04 -1.58 7.77 22.32 0.17 -1.41 16 17 C -0.16 -4.57 9.83 22.10 0.22 -4.35 16 18 C 0.17 4.65 6.66 39.15 0.26 4.92 16 19 N -0.62 -15.98 5.29 -311.98 -1.65 -17.63 16 20 H 0.42 9.09 8.76 -92.71 -0.81 8.28 16 21 C 0.53 15.31 7.66 85.01 0.65 15.96 16 22 O -0.60 -21.13 17.87 -4.89 -0.09 -21.22 16 23 C -0.24 -5.63 9.91 22.37 0.22 -5.41 16 24 C 0.01 0.28 10.10 23.80 0.24 0.52 16 25 C -0.14 -4.03 5.87 -20.14 -0.12 -4.15 16 26 C -0.05 -1.58 9.45 22.82 0.22 -1.37 16 27 H 0.29 12.30 8.29 -92.71 -0.77 11.53 16 28 H 0.12 5.68 6.34 -2.91 -0.02 5.66 16 29 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.15 5.23 8.06 -2.91 -0.02 5.21 16 31 H 0.13 4.95 6.73 -2.91 -0.02 4.93 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -59.55 306.37 2.90 -56.65 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.34 Total: 32.82 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.88 Total: -26.05 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -3.27 Total: -78.15 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.09 Total: -21.22 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.94 kcal Total: -59.55 2.90 -56.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244236548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.413 kcal (2) G-P(sol) polarization free energy of solvation -59.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds