Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86796 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46979 * 299.99757 * 3 2 1 6 6 H 1.48499 * 109.47431 * 59.99548 * 3 2 1 7 7 C 1.40087 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.40935 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.40903 * 119.67233 * 179.97438 * 9 7 2 11 11 C 1.36633 * 119.25892 * 180.02562 * 10 9 7 12 12 C 1.40336 * 118.60301 * 359.97438 * 11 10 9 13 13 C 1.47849 * 120.34881 * 180.02562 * 12 11 10 14 14 C 1.40620 * 119.82070 * 0.02624 * 13 12 11 15 15 C 1.35698 * 120.89433 * 180.02562 * 14 13 12 16 16 C 1.40783 * 120.13236 * 359.97438 * 15 14 13 17 17 N 1.33698 * 120.75766 * 179.97438 * 16 15 14 18 18 C 1.31600 * 121.34395 * 180.02562 * 17 16 15 19 19 O 1.35546 * 119.19648 * 179.97438 * 18 17 16 20 20 C 1.40045 * 121.61409 * 0.02562 * 18 17 16 21 21 C 1.36286 * 119.85681 * 359.97438 * 20 18 17 22 22 C 1.41099 * 118.26347 * 0.02562 * 21 20 18 23 23 C 1.38732 * 119.81635 * 179.97438 * 13 12 11 24 24 C 1.40149 * 119.29983 * 0.27777 * 12 11 10 25 25 N 1.31176 * 120.67924 * 359.44713 * 24 12 11 26 26 H 0.96995 * 119.99589 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.37083 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.69801 * 180.02562 * 11 10 9 29 29 H 1.08007 * 119.55081 * 359.97438 * 14 13 12 30 30 H 1.08008 * 119.93009 * 179.97438 * 15 14 13 31 31 H 0.96704 * 113.99709 * 270.02446 * 19 18 17 32 32 H 1.07997 * 120.06611 * 179.70851 * 20 18 17 33 33 H 1.08002 * 120.86767 * 179.97438 * 21 20 18 34 34 H 1.07996 * 120.29161 * 0.02562 * 23 13 12 35 35 H 1.07999 * 119.66290 * 179.70141 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0078 -1.2132 0.0005 8 1 3.0877 -1.2131 0.0010 9 6 1.3031 -2.4337 0.0005 10 6 2.0145 -3.6499 0.0005 11 6 1.3228 -4.8282 0.0000 12 6 -0.0799 -4.7838 0.0000 13 6 -0.8669 -6.0354 0.0000 14 6 -0.2063 -7.2768 0.0006 15 6 -0.9069 -8.4389 0.0001 16 6 -2.3146 -8.4155 -0.0005 17 7 -3.0174 -9.5528 -0.0015 18 6 -4.3333 -9.5444 -0.0025 19 8 -5.0021 -10.7234 -0.0040 20 6 -5.0598 -8.3471 -0.0031 21 6 -4.4012 -7.1539 -0.0021 22 6 -2.9903 -7.1695 -0.0010 23 6 -2.2530 -5.9787 0.0006 24 6 -0.7267 -3.5406 -0.0053 25 7 -0.0349 -2.4261 0.0005 26 1 -0.4849 0.8400 -0.0004 27 1 3.0945 -3.6507 0.0010 28 1 1.8445 -5.7738 0.0004 29 1 0.8734 -7.3057 0.0006 30 1 -0.3836 -9.3837 0.0001 31 1 -5.1952 -11.0649 -0.8879 32 1 -6.1395 -8.3693 -0.0087 33 1 -4.9450 -6.2208 -0.0030 34 1 -2.7591 -5.0247 0.0006 35 1 -1.8059 -3.4996 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244236755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = 22.865681 kcal Electronic energy + Delta-G solvation = -20989.019943 eV Core-core repulsion = 17722.905427 eV Total energy + Delta-G solvation = -3266.114516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80565 -40.27893 -39.01376 -36.94908 -35.52141 -34.48392 -32.88626 -32.45266 -31.05436 -29.98672 -27.28476 -25.28929 -24.51086 -23.90235 -22.71693 -22.31157 -19.91637 -19.56315 -18.77572 -18.09663 -17.53143 -17.01196 -16.31786 -16.24971 -15.82331 -15.52993 -15.04918 -14.77644 -14.64938 -14.30684 -14.18551 -14.16249 -13.88602 -13.27215 -12.98832 -12.89117 -12.70601 -12.57244 -12.44770 -12.31917 -11.99431 -11.74746 -11.55074 -11.27638 -10.44913 -10.34480 -9.98062 -9.55223 -9.49421 -8.70966 -8.39622 -6.52066 -0.63340 -0.23931 0.71656 1.10106 1.20320 1.40697 1.48754 1.56326 2.04809 2.18567 2.65967 2.80430 3.17928 3.59905 3.69155 3.91111 3.92240 3.93766 4.10946 4.16973 4.22968 4.34687 4.53673 4.55306 4.76133 4.86121 4.86719 4.97666 5.09278 5.11561 5.15652 5.32182 5.41565 5.48269 5.53204 5.72067 5.88824 5.99458 6.06503 6.21151 6.61562 6.65721 6.86712 6.93836 8.10127 8.32797 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039978 B = 0.003028 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.224507 B = 9245.715003 C = 9933.511691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.019 3.981 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.441 4.441 8 H 0.096 0.904 9 C 0.218 3.782 10 C -0.286 4.286 11 C -0.037 4.037 12 C -0.270 4.270 13 C 0.011 3.989 14 C -0.102 4.102 15 C -0.096 4.096 16 C 0.106 3.894 17 N -0.520 5.520 18 C 0.317 3.683 19 O -0.491 6.491 20 C -0.178 4.178 21 C -0.049 4.049 22 C -0.104 4.104 23 C -0.135 4.135 24 C 0.137 3.863 25 N -0.523 5.523 26 H 0.284 0.716 27 H 0.115 0.885 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.420 0.580 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.137 0.863 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.244 -10.415 -1.823 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.204 4.204 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.114 0.886 9 C 0.095 3.905 10 C -0.309 4.309 11 C -0.060 4.060 12 C -0.276 4.276 13 C 0.010 3.990 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.015 4.015 17 N -0.240 5.240 18 C 0.123 3.877 19 O -0.301 6.301 20 C -0.199 4.199 21 C -0.075 4.075 22 C -0.106 4.106 23 C -0.153 4.153 24 C -0.031 4.031 25 N -0.235 5.235 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.281 0.719 32 H 0.191 0.809 33 H 0.187 0.813 34 H 0.154 0.846 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.279 -10.164 -1.230 12.562 hybrid contribution 0.340 0.455 -0.443 0.720 sum -6.939 -9.709 -1.674 12.051 Atomic orbital electron populations 1.70211 1.09052 1.29661 1.27146 1.27128 0.95810 1.04893 0.92617 0.85022 0.79476 0.75529 0.78930 1.17471 1.18970 1.19018 1.20190 0.95316 0.90473 1.41129 0.88594 1.19139 0.89021 0.93467 0.88885 1.21638 0.99800 0.93519 1.15907 1.21048 0.93167 0.97676 0.94105 1.19275 0.93657 0.92841 1.21788 1.18874 0.92929 0.92238 0.95002 1.21126 1.01134 0.90807 0.99138 1.20776 0.91177 0.99169 1.00329 1.18693 0.94302 0.87206 1.01296 1.67363 1.09445 1.31189 1.16037 1.19605 0.86588 0.86512 0.95003 1.84691 1.73781 1.35716 1.35890 1.22047 1.03170 0.91054 1.03590 1.21772 0.91838 1.00122 0.93736 1.18931 0.95350 0.93817 1.02492 1.21307 0.93023 0.97257 1.03754 1.23150 0.99581 0.88148 0.92223 1.68751 1.07695 1.27951 1.19113 0.90542 0.86694 0.84774 0.83939 0.83627 0.71856 0.80908 0.81287 0.84562 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.11 11.44 21.85 0.25 -37.86 16 2 C 0.02 0.92 5.50 85.31 0.47 1.39 16 3 Si 0.99 35.82 29.56 68.60 2.03 37.84 16 4 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.27 -9.24 7.11 99.48 0.71 -8.54 16 6 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.44 -22.77 9.12 23.38 0.21 -22.55 16 8 H 0.10 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.22 11.61 6.55 40.16 0.26 11.87 16 10 C -0.29 -13.36 9.76 22.55 0.22 -13.14 16 11 C -0.04 -1.54 9.46 22.40 0.21 -1.32 16 12 C -0.27 -11.37 5.92 -19.76 -0.12 -11.49 16 13 C 0.01 0.38 5.88 -20.03 -0.12 0.26 16 14 C -0.10 -3.18 9.34 22.26 0.21 -2.98 16 15 C -0.10 -2.86 9.94 22.30 0.22 -2.63 16 16 C 0.11 3.34 6.61 40.35 0.27 3.60 16 17 N -0.52 -15.83 10.36 -301.87 -3.13 -18.96 16 18 C 0.32 7.83 7.72 85.17 0.66 8.49 16 19 O -0.49 -9.61 13.54 -88.51 -1.20 -10.81 16 20 C -0.18 -3.59 9.95 22.25 0.22 -3.37 16 21 C -0.05 -1.12 9.88 22.52 0.22 -0.90 16 22 C -0.10 -3.09 5.74 -21.27 -0.12 -3.21 16 23 C -0.13 -4.35 9.19 22.83 0.21 -4.14 16 24 C 0.14 6.37 10.59 85.26 0.90 7.27 16 25 N -0.52 -28.20 7.83 -188.20 -1.47 -29.67 16 26 H 0.28 13.04 8.29 -92.71 -0.77 12.27 16 27 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.13 4.52 6.25 -2.91 -0.02 4.50 16 29 H 0.14 3.88 6.19 -2.91 -0.02 3.86 16 30 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.42 3.68 9.06 -74.05 -0.67 3.01 16 32 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.14 4.11 6.18 -2.91 -0.02 4.09 16 35 H 0.14 5.72 6.18 -2.91 -0.02 5.71 16 Total: -1.00 -66.82 307.42 0.90 -65.92 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.49 Total: 26.38 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.93 Total: -32.85 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -4.35 Total: -86.49 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.20 Total: -10.81 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.84 kcal Total: -66.82 0.90 -65.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244236755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.787 kcal (2) G-P(sol) polarization free energy of solvation -66.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds