Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46903 * 299.99975 * 3 2 1 6 6 H 1.48493 * 109.47236 * 60.00028 * 3 2 1 7 7 C 1.40166 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00430 * 164.80321 * 7 2 1 9 9 C 1.40866 * 119.99651 * 344.79856 * 7 2 1 10 10 C 1.41140 * 121.11500 * 334.43987 * 9 7 2 11 11 C 1.36442 * 119.11648 * 180.02562 * 10 9 7 12 12 N 1.32242 * 121.52788 * 359.97280 * 11 10 9 13 13 C 1.31645 * 122.51213 * 0.02562 * 12 11 10 14 14 C 1.39394 * 120.64839 * 0.27538 * 13 12 11 15 15 C 1.47724 * 120.79115 * 179.72109 * 14 13 12 16 16 C 1.40655 * 119.82501 * 129.99823 * 15 14 13 17 17 C 1.35691 * 120.89181 * 179.97438 * 16 15 14 18 18 C 1.40794 * 120.13478 * 0.02606 * 17 16 15 19 19 N 1.33698 * 120.75395 * 179.97438 * 18 17 16 20 20 C 1.31599 * 121.34892 * 179.97438 * 19 18 17 21 21 O 1.35549 * 119.18931 * 180.02562 * 20 19 18 22 22 C 1.40042 * 121.61661 * 0.04026 * 20 19 18 23 23 C 1.36292 * 119.85815 * 359.97438 * 22 20 19 24 24 C 1.41100 * 118.25629 * 0.02562 * 23 22 20 25 25 C 1.38793 * 119.81993 * 309.73143 * 15 14 13 26 26 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.44346 * 0.03837 * 10 9 7 28 28 H 1.08005 * 119.24030 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.67711 * 179.97438 * 13 12 11 30 30 H 1.08007 * 119.55573 * 359.96116 * 16 15 14 31 31 H 1.08001 * 119.93529 * 180.02562 * 17 16 15 32 32 H 0.96701 * 113.99329 * 270.03338 * 21 20 19 33 33 H 1.08000 * 120.06639 * 180.02562 * 22 20 19 34 34 H 1.07998 * 120.86924 * 180.02562 * 23 22 20 35 35 H 1.07995 * 120.29460 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8822 2.3964 1.2124 7 6 2.0078 -1.2139 -0.0005 8 1 3.0594 -1.2301 -0.2457 9 6 1.3404 -2.4126 0.3188 10 6 0.1857 -2.4105 1.1305 11 6 -0.4281 -3.5955 1.4146 12 7 0.0335 -4.7431 0.9469 13 6 1.1046 -4.8170 0.1850 14 6 1.8113 -3.6665 -0.1610 15 6 3.0171 -3.7465 -1.0107 16 6 3.1383 -2.9085 -2.1338 17 6 4.2365 -2.9635 -2.9288 18 6 5.2758 -3.8674 -2.6370 19 7 6.3632 -3.9324 -3.4122 20 6 7.3417 -4.7724 -3.1500 21 8 8.4244 -4.8011 -3.9650 22 6 7.2916 -5.6375 -2.0499 23 6 6.2095 -5.6198 -1.2215 24 6 5.1637 -4.7170 -1.5078 25 6 4.0268 -4.6443 -0.6932 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2068 -1.4834 1.5213 28 1 -1.3116 -3.5963 2.0358 29 1 1.4417 -5.7791 -0.1715 30 1 2.3463 -2.2120 -2.3668 31 1 4.3137 -2.3126 -3.7872 32 1 8.3456 -5.4225 -4.7018 33 1 8.1091 -6.3167 -1.8580 34 1 6.1541 -6.2796 -0.3682 35 1 3.9345 -5.2845 0.1716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244237579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = 32.393116 kcal Electronic energy + Delta-G solvation = -21665.688673 eV Core-core repulsion = 18399.987297 eV Total energy + Delta-G solvation = -3265.701376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57742 -38.75959 -37.74957 -35.59311 -34.34478 -33.27470 -31.46353 -30.33470 -29.75851 -27.97092 -26.11848 -23.89296 -23.29351 -22.12150 -21.30959 -20.88474 -18.73507 -17.81905 -17.55936 -16.68860 -15.95066 -15.69538 -14.86647 -14.62302 -14.55854 -14.26522 -13.81227 -13.57955 -13.27823 -12.91610 -12.85375 -12.60284 -12.35788 -11.91069 -11.59513 -11.53434 -11.36000 -11.15940 -11.04909 -10.83560 -10.40462 -10.35295 -9.96623 -9.63253 -9.25477 -8.51471 -8.22764 -8.11326 -7.93839 -7.37424 -7.03222 -4.79268 0.65479 1.05977 2.23987 2.54176 2.65690 2.92941 2.98901 3.09414 3.25483 3.70655 3.75903 4.42614 4.44958 4.73966 4.92504 5.03724 5.21025 5.39500 5.53739 5.57865 5.68739 5.76036 5.80584 6.04459 6.10780 6.17891 6.42027 6.48146 6.64939 6.67491 6.71673 6.81433 6.89045 7.12376 7.20300 7.27522 7.35439 7.53487 7.66783 7.89739 8.11599 8.24620 8.49523 8.53080 9.45986 9.81639 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.005075 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.413534 B = 5516.126208 C = 6903.140810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.438 4.438 8 H 0.088 0.912 9 C 0.147 3.853 10 C -0.206 4.206 11 C 0.083 3.917 12 N -0.578 5.578 13 C 0.136 3.864 14 C -0.246 4.246 15 C 0.040 3.960 16 C -0.062 4.062 17 C -0.111 4.111 18 C 0.134 3.866 19 N -0.490 5.490 20 C 0.313 3.687 21 O -0.487 6.487 22 C -0.192 4.192 23 C -0.048 4.048 24 C -0.096 4.096 25 C -0.126 4.126 26 H 0.287 0.713 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.395 0.605 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.206 -5.346 -3.418 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.139 3.861 10 C -0.228 4.228 11 C -0.064 4.064 12 N -0.292 5.292 13 C -0.023 4.023 14 C -0.252 4.252 15 C 0.039 3.961 16 C -0.081 4.081 17 C -0.130 4.130 18 C 0.012 3.988 19 N -0.209 5.209 20 C 0.119 3.881 21 O -0.293 6.293 22 C -0.214 4.214 23 C -0.074 4.074 24 C -0.098 4.098 25 C -0.145 4.145 26 H 0.098 0.902 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.252 0.748 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.725 -4.932 -3.505 9.813 hybrid contribution 0.627 0.792 0.117 1.017 sum 8.353 -4.140 -3.388 9.919 Atomic orbital electron populations 1.69737 1.07825 1.30076 1.32058 1.26049 0.94783 1.01794 0.91760 0.86216 0.81285 0.80276 0.79020 1.17923 1.19476 1.19324 1.19686 0.97675 0.90414 1.39027 0.89370 1.17729 0.90147 0.91107 0.87139 1.21926 0.99980 0.98336 1.02552 1.21746 0.98069 0.88830 0.97753 1.67335 1.16012 1.29140 1.16677 1.22124 0.91183 0.95665 0.93359 1.19496 1.01009 0.95286 1.09382 1.18791 0.92679 0.92184 0.92398 1.21296 0.97231 0.97065 0.92551 1.20634 0.92697 0.98695 1.00987 1.18513 0.91979 0.96522 0.91751 1.67370 1.00755 1.21114 1.31690 1.19229 0.86143 0.91978 0.90717 1.84746 1.34969 1.66776 1.42805 1.21665 1.00255 1.01683 0.97763 1.21379 0.91885 0.96138 0.97996 1.18748 0.96291 0.98013 0.96747 1.21305 0.92338 1.01285 0.99565 0.90180 0.85539 0.86309 0.85988 0.84273 0.85258 0.74797 0.84695 0.84312 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.87 10.93 55.56 0.61 -17.26 16 2 C 0.08 1.75 5.22 -17.31 -0.09 1.66 16 3 Si 0.91 17.16 29.59 -169.99 -5.03 12.13 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.44 -10.33 7.25 -37.86 -0.27 -10.60 16 8 H 0.09 2.06 6.68 -52.49 -0.35 1.71 16 9 C 0.15 3.53 5.59 -106.25 -0.59 2.94 16 10 C -0.21 -4.93 8.72 -39.13 -0.34 -5.27 16 11 C 0.08 1.88 11.08 -18.02 -0.20 1.68 16 12 N -0.58 -13.26 10.32 -13.35 -0.14 -13.40 16 13 C 0.14 2.94 10.69 -17.20 -0.18 2.76 16 14 C -0.25 -5.45 5.52 -104.04 -0.57 -6.03 16 15 C 0.04 0.80 5.00 -104.90 -0.52 0.27 16 16 C -0.06 -1.17 7.94 -39.58 -0.31 -1.48 16 17 C -0.11 -1.97 9.94 -39.53 -0.39 -2.36 16 18 C 0.13 2.39 6.61 -84.75 -0.56 1.82 16 19 N -0.49 -8.50 10.36 -10.96 -0.11 -8.61 16 20 C 0.31 4.59 7.72 -16.98 -0.13 4.46 16 21 O -0.49 -5.95 13.54 -18.34 -0.25 -6.20 16 22 C -0.19 -2.43 9.95 -39.61 -0.39 -2.82 16 23 C -0.05 -0.65 9.88 -39.20 -0.39 -1.03 16 24 C -0.10 -1.59 5.74 -106.79 -0.61 -2.20 16 25 C -0.13 -2.19 9.28 -38.70 -0.36 -2.55 16 26 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 27 H 0.13 3.07 6.26 -52.49 -0.33 2.74 16 28 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.12 2.31 8.05 -52.49 -0.42 1.89 16 30 H 0.14 2.73 7.31 -52.48 -0.38 2.35 16 31 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.40 2.70 9.06 45.56 0.41 3.11 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.99 8.04 -52.49 -0.42 1.57 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -28.15 308.12 -8.53 -36.69 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.32 Total: 10.76 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -5.93 Total: -18.76 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.36 Total: -39.27 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.25 Total: -6.20 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.15 -8.53 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244237579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.079 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds