Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46903 * 299.99975 * 3 2 1 6 6 H 1.48493 * 109.47236 * 60.00028 * 3 2 1 7 7 C 1.40166 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00430 * 164.80321 * 7 2 1 9 9 C 1.40866 * 119.99651 * 344.79856 * 7 2 1 10 10 C 1.41140 * 121.11500 * 334.43987 * 9 7 2 11 11 C 1.36442 * 119.11648 * 180.02562 * 10 9 7 12 12 N 1.32242 * 121.52788 * 359.97280 * 11 10 9 13 13 C 1.31645 * 122.51213 * 0.02562 * 12 11 10 14 14 C 1.39394 * 120.64839 * 0.27538 * 13 12 11 15 15 C 1.47724 * 120.79115 * 179.72109 * 14 13 12 16 16 C 1.40655 * 119.82501 * 129.99823 * 15 14 13 17 17 C 1.35691 * 120.89181 * 179.97438 * 16 15 14 18 18 C 1.40794 * 120.13478 * 0.02606 * 17 16 15 19 19 N 1.33698 * 120.75395 * 179.97438 * 18 17 16 20 20 C 1.31599 * 121.34892 * 179.97438 * 19 18 17 21 21 O 1.35549 * 119.18931 * 180.02562 * 20 19 18 22 22 C 1.40042 * 121.61661 * 0.04026 * 20 19 18 23 23 C 1.36292 * 119.85815 * 359.97438 * 22 20 19 24 24 C 1.41100 * 118.25629 * 0.02562 * 23 22 20 25 25 C 1.38793 * 119.81993 * 309.73143 * 15 14 13 26 26 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.44346 * 0.03837 * 10 9 7 28 28 H 1.08005 * 119.24030 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.67711 * 179.97438 * 13 12 11 30 30 H 1.08007 * 119.55573 * 359.96116 * 16 15 14 31 31 H 1.08001 * 119.93529 * 180.02562 * 17 16 15 32 32 H 0.96701 * 113.99329 * 270.03338 * 21 20 19 33 33 H 1.08000 * 120.06639 * 180.02562 * 22 20 19 34 34 H 1.07998 * 120.86924 * 180.02562 * 23 22 20 35 35 H 1.07995 * 120.29460 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8822 2.3964 1.2124 7 6 2.0078 -1.2139 -0.0005 8 1 3.0594 -1.2301 -0.2457 9 6 1.3404 -2.4126 0.3188 10 6 0.1857 -2.4105 1.1305 11 6 -0.4281 -3.5955 1.4146 12 7 0.0335 -4.7431 0.9469 13 6 1.1046 -4.8170 0.1850 14 6 1.8113 -3.6665 -0.1610 15 6 3.0171 -3.7465 -1.0107 16 6 3.1383 -2.9085 -2.1338 17 6 4.2365 -2.9635 -2.9288 18 6 5.2758 -3.8674 -2.6370 19 7 6.3632 -3.9324 -3.4122 20 6 7.3417 -4.7724 -3.1500 21 8 8.4244 -4.8011 -3.9650 22 6 7.2916 -5.6375 -2.0499 23 6 6.2095 -5.6198 -1.2215 24 6 5.1637 -4.7170 -1.5078 25 6 4.0268 -4.6443 -0.6932 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2068 -1.4834 1.5213 28 1 -1.3116 -3.5963 2.0358 29 1 1.4417 -5.7791 -0.1715 30 1 2.3463 -2.2120 -2.3668 31 1 4.3137 -2.3126 -3.7872 32 1 8.3456 -5.4225 -4.7018 33 1 8.1091 -6.3167 -1.8580 34 1 6.1541 -6.2796 -0.3682 35 1 3.9345 -5.2845 0.1716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244237579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = 13.894910 kcal Electronic energy + Delta-G solvation = -21666.490815 eV Core-core repulsion = 18399.987297 eV Total energy + Delta-G solvation = -3266.503518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.79965 -40.35194 -38.99209 -36.84541 -36.04614 -34.48133 -33.03153 -31.99823 -31.03661 -29.46300 -27.82342 -25.15616 -24.64332 -23.62053 -22.80643 -22.40965 -19.86529 -19.52465 -18.82266 -17.99291 -17.38349 -17.05927 -16.43437 -16.15974 -15.94887 -15.71517 -15.09141 -14.83840 -14.62420 -14.44138 -14.21470 -14.11594 -13.90937 -13.33763 -13.19405 -12.91439 -12.85646 -12.58875 -12.36824 -12.22417 -11.96963 -11.67273 -11.52165 -11.29944 -10.42207 -10.07092 -9.92967 -9.70999 -9.44064 -8.91679 -8.66614 -6.56393 -0.56624 -0.17770 0.74999 0.96551 1.13027 1.36313 1.48907 1.50963 1.97415 2.13173 2.67543 2.72220 3.12481 3.61468 3.69482 3.72452 3.92787 3.96400 4.05859 4.25460 4.35410 4.49534 4.52688 4.54461 4.85627 4.89513 4.98276 4.99194 5.12636 5.18952 5.23605 5.32514 5.48349 5.51559 5.54455 5.75004 5.86919 5.99126 6.16335 6.48818 6.66766 6.74664 6.77681 6.95649 7.70405 8.15776 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.005075 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.413534 B = 5516.126208 C = 6903.140810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.045 3.955 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.228 4.228 11 C 0.079 3.921 12 N -0.589 5.589 13 C 0.126 3.874 14 C -0.243 4.243 15 C 0.006 3.994 16 C -0.071 4.071 17 C -0.115 4.115 18 C 0.121 3.879 19 N -0.528 5.528 20 C 0.323 3.677 21 O -0.491 6.491 22 C -0.182 4.182 23 C -0.039 4.039 24 C -0.113 4.113 25 C -0.105 4.105 26 H 0.295 0.705 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.421 0.579 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -6.900 -3.515 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.174 4.174 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.111 3.889 10 C -0.250 4.250 11 C -0.069 4.069 12 N -0.303 5.303 13 C -0.031 4.031 14 C -0.248 4.248 15 C 0.005 3.995 16 C -0.091 4.091 17 C -0.134 4.134 18 C 0.001 3.999 19 N -0.248 5.248 20 C 0.129 3.871 21 O -0.301 6.301 22 C -0.202 4.202 23 C -0.064 4.064 24 C -0.115 4.115 25 C -0.124 4.124 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.137 0.863 31 H 0.154 0.846 32 H 0.282 0.718 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.402 -6.520 -3.631 12.802 hybrid contribution 0.054 1.096 0.006 1.098 sum 10.456 -5.424 -3.625 12.324 Atomic orbital electron populations 1.69767 1.08927 1.31258 1.32660 1.26725 0.95381 1.04272 0.91021 0.85279 0.79447 0.76608 0.79357 1.18602 1.18749 1.18489 1.19737 0.97436 0.91216 1.40267 0.90077 1.18097 0.90719 0.92367 0.87671 1.21915 1.00921 0.98425 1.03769 1.22051 0.98587 0.88477 0.97775 1.67399 1.16584 1.29047 1.17316 1.22550 0.90746 0.96749 0.93075 1.19750 1.01674 0.94713 1.08701 1.18719 0.93144 0.94498 0.93119 1.21061 0.97409 0.97322 0.93338 1.20689 0.92580 0.99122 1.00966 1.18616 0.92170 0.96741 0.92423 1.67358 1.01634 1.23145 1.32646 1.19675 0.85408 0.90779 0.91232 1.84690 1.33721 1.67935 1.43768 1.22054 1.00945 1.01140 0.96085 1.21794 0.90591 0.95182 0.98824 1.18943 0.97118 0.99018 0.96444 1.21467 0.91641 0.99739 0.99574 0.89397 0.86641 0.84180 0.83268 0.86298 0.84623 0.71802 0.80612 0.80611 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.34 10.93 21.86 0.24 -38.10 16 2 C 0.05 2.09 5.22 85.33 0.45 2.53 16 3 Si 0.97 35.93 29.59 68.60 2.03 37.96 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.46 -22.47 7.25 23.38 0.17 -22.30 16 8 H 0.08 3.99 6.68 -2.91 -0.02 3.97 16 9 C 0.12 5.98 5.59 -20.92 -0.12 5.86 16 10 C -0.23 -11.34 8.72 22.56 0.20 -11.14 16 11 C 0.08 3.64 11.08 84.21 0.93 4.57 16 12 N -0.59 -27.09 10.32 -196.15 -2.02 -29.11 16 13 C 0.13 5.47 10.69 85.00 0.91 6.38 16 14 C -0.24 -11.02 5.52 -19.49 -0.11 -11.13 16 15 C 0.01 0.24 5.00 -20.05 -0.10 0.14 16 16 C -0.07 -2.83 7.94 22.27 0.18 -2.65 16 17 C -0.11 -4.15 9.94 22.30 0.22 -3.93 16 18 C 0.12 4.20 6.61 40.35 0.27 4.47 16 19 N -0.53 -17.38 10.36 -301.86 -3.13 -20.51 16 20 C 0.32 8.37 7.72 85.17 0.66 9.03 16 21 O -0.49 -10.16 13.54 -88.54 -1.20 -11.36 16 22 C -0.18 -3.69 9.95 22.25 0.22 -3.46 16 23 C -0.04 -0.86 9.88 22.52 0.22 -0.64 16 24 C -0.11 -3.50 5.74 -21.27 -0.12 -3.62 16 25 C -0.11 -3.52 9.28 22.84 0.21 -3.31 16 26 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 27 H 0.12 5.88 6.26 -2.91 -0.02 5.86 16 28 H 0.14 5.66 8.06 -2.91 -0.02 5.63 16 29 H 0.15 5.47 8.05 -2.91 -0.02 5.45 16 30 H 0.12 5.05 7.31 -2.91 -0.02 5.03 16 31 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 32 H 0.42 4.09 9.06 -74.06 -0.67 3.41 16 33 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.14 4.18 8.04 -2.91 -0.02 4.16 16 Total: -1.00 -62.58 308.12 0.59 -62.00 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.48 Total: 28.34 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.19 Total: -29.21 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -4.91 Total: -87.72 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.20 Total: -11.36 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -62.58 0.59 -62.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244237579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.890 kcal (2) G-P(sol) polarization free energy of solvation -62.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds