Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86801 * 120.00284 * 2 1 4 4 H 1.48503 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47127 * 299.99785 * 3 2 1 6 6 H 1.48494 * 109.47230 * 59.99934 * 3 2 1 7 7 C 1.40135 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.40757 * 119.99717 * 359.97438 * 7 2 1 10 10 N 1.33713 * 119.94645 * 359.97438 * 9 7 2 11 11 C 1.31269 * 121.63777 * 180.02562 * 10 9 7 12 12 C 1.39086 * 121.35427 * 0.02725 * 11 10 9 13 13 C 1.38343 * 119.73921 * 359.67277 * 12 11 10 14 14 C 1.39756 * 118.46791 * 0.58892 * 13 12 11 15 15 C 1.47689 * 120.65406 * 179.71317 * 14 13 12 16 16 C 1.40683 * 119.82749 * 129.72361 * 15 14 13 17 17 C 1.35677 * 120.88777 * 179.97438 * 16 15 14 18 18 C 1.40806 * 120.13816 * 359.97438 * 17 16 15 19 19 N 1.33687 * 120.74065 * 180.26870 * 18 17 16 20 20 C 1.31616 * 121.34719 * 180.27522 * 19 18 17 21 21 O 1.35534 * 119.19547 * 179.71806 * 20 19 18 22 22 C 1.40039 * 121.60854 * 359.44353 * 20 19 18 23 23 C 1.36292 * 119.86183 * 0.28106 * 22 20 19 24 24 C 1.41109 * 118.25886 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.82516 * 309.67864 * 15 14 13 26 26 H 0.97005 * 120.00068 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.32648 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.13235 * 179.97438 * 12 11 10 29 29 H 1.07998 * 120.76629 * 180.31847 * 13 12 11 30 30 H 1.08000 * 119.55480 * 359.95010 * 16 15 14 31 31 H 1.08001 * 119.93120 * 179.97438 * 17 16 15 32 32 H 0.96700 * 114.00259 * 269.73383 * 21 20 19 33 33 H 1.08004 * 120.06552 * 180.29476 * 22 20 19 34 34 H 1.07997 * 120.86949 * 179.97438 * 23 22 20 35 35 H 1.08001 * 120.29109 * 0.04712 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3462 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8824 2.3964 1.2124 7 6 2.0076 -1.2136 0.0005 8 1 3.0876 -1.2137 0.0010 9 6 1.3038 -2.4326 0.0016 10 7 -0.0334 -2.4312 0.0027 11 6 -0.7231 -3.5481 0.0042 12 6 -0.0927 -4.7879 0.0054 13 6 1.2891 -4.8553 -0.0019 14 6 2.0143 -3.6606 0.0023 15 6 3.4911 -3.6762 0.0012 16 6 4.1984 -2.8999 -0.9349 17 6 5.5550 -2.8977 -0.9548 18 6 6.2769 -3.6779 -0.0313 19 7 7.6137 -3.6806 -0.0366 20 6 8.3004 -4.4094 0.8176 21 8 9.6546 -4.3837 0.7696 22 6 7.6659 -5.2064 1.7785 23 6 6.3048 -5.2426 1.8388 24 6 5.5743 -4.4631 0.9169 25 6 4.1740 -4.4560 0.9245 26 1 -0.4850 0.8401 -0.0004 27 1 -1.8021 -3.5035 0.0046 28 1 -0.6796 -5.6945 0.0071 29 1 1.7957 -5.8090 -0.0063 30 1 3.6542 -2.2980 -1.6476 31 1 6.0823 -2.2963 -1.6805 32 1 10.0404 -5.0538 0.1889 33 1 8.2540 -5.7910 2.4705 34 1 5.7987 -5.8518 2.5729 35 1 3.6301 -5.0515 1.6428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244237599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = 45.065739 kcal Electronic energy + Delta-G solvation = -21682.042221 eV Core-core repulsion = 18416.890372 eV Total energy + Delta-G solvation = -3265.151849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57780 -38.67246 -37.68489 -35.56795 -33.85704 -33.26987 -31.43524 -30.50393 -29.74941 -28.07986 -25.85224 -23.92041 -23.28884 -22.10062 -21.23186 -20.86002 -18.73221 -17.81284 -17.46572 -16.76910 -15.94849 -15.63643 -14.78393 -14.71590 -14.40774 -14.15506 -13.80770 -13.58505 -13.29345 -12.98001 -12.75239 -12.33985 -12.24277 -11.82172 -11.47807 -11.38506 -11.24413 -11.20511 -10.98827 -10.81196 -10.44721 -10.33402 -9.92950 -9.55984 -9.24956 -8.59379 -8.20749 -8.01645 -7.75768 -7.31548 -6.60389 -4.70041 0.65810 1.05661 2.26727 2.55649 2.77856 3.01340 3.06383 3.10497 3.27753 3.76049 3.81670 4.42548 4.57391 4.74155 4.92549 5.04172 5.21415 5.45289 5.59260 5.68817 5.75404 5.77407 5.95635 6.03410 6.04616 6.16087 6.37515 6.41036 6.47820 6.68126 6.68431 6.75389 6.93932 7.05358 7.14639 7.26467 7.45621 7.53733 7.58410 7.85588 8.05855 8.11868 8.44265 8.72512 9.90562 10.09274 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.005103 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.800488 B = 5485.439566 C = 6862.234831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.417 4.417 8 H 0.094 0.906 9 C 0.269 3.731 10 N -0.481 5.481 11 C 0.137 3.863 12 C -0.321 4.321 13 C -0.027 4.027 14 C -0.248 4.248 15 C 0.043 3.957 16 C -0.070 4.070 17 C -0.109 4.109 18 C 0.131 3.869 19 N -0.489 5.489 20 C 0.311 3.689 21 O -0.486 6.486 22 C -0.191 4.191 23 C -0.050 4.050 24 C -0.094 4.094 25 C -0.128 4.128 26 H 0.276 0.724 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.395 0.605 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.864 -7.232 0.861 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.160 4.160 3 Si 0.726 3.274 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.446 4.446 8 H 0.112 0.888 9 C 0.146 3.854 10 N -0.192 5.192 11 C -0.033 4.033 12 C -0.344 4.344 13 C -0.051 4.051 14 C -0.253 4.253 15 C 0.042 3.958 16 C -0.090 4.090 17 C -0.127 4.127 18 C 0.010 3.990 19 N -0.208 5.208 20 C 0.118 3.882 21 O -0.293 6.293 22 C -0.213 4.213 23 C -0.075 4.075 24 C -0.096 4.096 25 C -0.147 4.147 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.252 0.748 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.630 -5.223 0.619 10.106 hybrid contribution 0.440 -1.036 0.393 1.192 sum 9.070 -6.258 1.012 11.066 Atomic orbital electron populations 1.70114 1.07346 1.28248 1.26542 1.26157 0.94920 1.01390 0.93485 0.86315 0.81255 0.80926 0.78913 1.17906 1.19471 1.19547 1.19878 0.94975 0.89317 1.40407 0.88763 1.18519 0.87998 0.90827 0.88087 1.68781 1.07005 1.26617 1.16800 1.22654 0.98922 0.88827 0.92876 1.21238 0.94565 0.97947 1.20614 1.20900 0.93793 0.95605 0.94837 1.19309 0.90377 0.94677 1.20958 1.18817 0.93184 0.92045 0.91779 1.21302 0.93091 0.96845 0.97774 1.20628 0.93635 0.99514 0.98947 1.18494 0.87248 0.97260 0.96014 1.67361 1.08279 1.20394 1.24775 1.19215 0.83974 0.92863 0.92160 1.84741 1.15030 1.60622 1.68875 1.21665 0.95485 1.02217 1.01890 1.21375 0.93350 0.96148 0.96659 1.18750 0.94916 0.98909 0.97015 1.21271 0.91270 1.02158 0.99962 0.91253 0.86217 0.88528 0.88411 0.84309 0.85193 0.74823 0.84700 0.84361 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.66 11.46 55.56 0.64 -17.03 16 2 C 0.07 1.63 5.50 -17.32 -0.10 1.53 16 3 Si 0.90 17.88 29.56 -169.99 -5.03 12.86 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.42 -10.35 7.93 -37.92 -0.30 -10.65 16 8 H 0.09 2.23 5.23 -52.49 -0.27 1.95 16 9 C 0.27 6.82 6.55 -84.70 -0.56 6.26 16 10 N -0.48 -12.49 7.85 -10.90 -0.09 -12.58 16 11 C 0.14 3.11 11.17 -17.48 -0.20 2.91 16 12 C -0.32 -6.69 10.10 -39.23 -0.40 -7.09 16 13 C -0.03 -0.56 9.65 -38.98 -0.38 -0.94 16 14 C -0.25 -5.60 5.52 -104.08 -0.57 -6.17 16 15 C 0.04 0.85 5.03 -104.90 -0.53 0.33 16 16 C -0.07 -1.34 7.44 -39.58 -0.29 -1.63 16 17 C -0.11 -1.92 9.94 -39.53 -0.39 -2.32 16 18 C 0.13 2.36 6.61 -84.75 -0.56 1.80 16 19 N -0.49 -8.54 10.36 -10.96 -0.11 -8.65 16 20 C 0.31 4.61 7.72 -16.97 -0.13 4.48 16 21 O -0.49 -5.98 13.54 -18.30 -0.25 -6.23 16 22 C -0.19 -2.44 9.95 -39.61 -0.39 -2.84 16 23 C -0.05 -0.68 9.88 -39.19 -0.39 -1.06 16 24 C -0.09 -1.58 5.74 -106.79 -0.61 -2.20 16 25 C -0.13 -2.27 9.29 -38.70 -0.36 -2.63 16 26 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 27 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.14 2.65 7.21 -52.49 -0.38 2.27 16 31 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.40 2.71 9.06 45.56 0.41 3.12 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.13 2.04 8.04 -52.49 -0.42 1.61 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -29.81 308.29 -8.68 -38.49 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -2.33 Total: 8.70 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -6.15 Total: -20.21 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.44 Total: -38.26 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.25 Total: -6.23 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.81 -8.68 -38.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244237599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.552 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds