Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86801 * 120.00284 * 2 1 4 4 H 1.48503 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47127 * 299.99785 * 3 2 1 6 6 H 1.48494 * 109.47230 * 59.99934 * 3 2 1 7 7 C 1.40135 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.40757 * 119.99717 * 359.97438 * 7 2 1 10 10 N 1.33713 * 119.94645 * 359.97438 * 9 7 2 11 11 C 1.31269 * 121.63777 * 180.02562 * 10 9 7 12 12 C 1.39086 * 121.35427 * 0.02725 * 11 10 9 13 13 C 1.38343 * 119.73921 * 359.67277 * 12 11 10 14 14 C 1.39756 * 118.46791 * 0.58892 * 13 12 11 15 15 C 1.47689 * 120.65406 * 179.71317 * 14 13 12 16 16 C 1.40683 * 119.82749 * 129.72361 * 15 14 13 17 17 C 1.35677 * 120.88777 * 179.97438 * 16 15 14 18 18 C 1.40806 * 120.13816 * 359.97438 * 17 16 15 19 19 N 1.33687 * 120.74065 * 180.26870 * 18 17 16 20 20 C 1.31616 * 121.34719 * 180.27522 * 19 18 17 21 21 O 1.35534 * 119.19547 * 179.71806 * 20 19 18 22 22 C 1.40039 * 121.60854 * 359.44353 * 20 19 18 23 23 C 1.36292 * 119.86183 * 0.28106 * 22 20 19 24 24 C 1.41109 * 118.25886 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.82516 * 309.67864 * 15 14 13 26 26 H 0.97005 * 120.00068 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.32648 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.13235 * 179.97438 * 12 11 10 29 29 H 1.07998 * 120.76629 * 180.31847 * 13 12 11 30 30 H 1.08000 * 119.55480 * 359.95010 * 16 15 14 31 31 H 1.08001 * 119.93120 * 179.97438 * 17 16 15 32 32 H 0.96700 * 114.00259 * 269.73383 * 21 20 19 33 33 H 1.08004 * 120.06552 * 180.29476 * 22 20 19 34 34 H 1.07997 * 120.86949 * 179.97438 * 23 22 20 35 35 H 1.08001 * 120.29109 * 0.04712 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3462 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8824 2.3964 1.2124 7 6 2.0076 -1.2136 0.0005 8 1 3.0876 -1.2137 0.0010 9 6 1.3038 -2.4326 0.0016 10 7 -0.0334 -2.4312 0.0027 11 6 -0.7231 -3.5481 0.0042 12 6 -0.0927 -4.7879 0.0054 13 6 1.2891 -4.8553 -0.0019 14 6 2.0143 -3.6606 0.0023 15 6 3.4911 -3.6762 0.0012 16 6 4.1984 -2.8999 -0.9349 17 6 5.5550 -2.8977 -0.9548 18 6 6.2769 -3.6779 -0.0313 19 7 7.6137 -3.6806 -0.0366 20 6 8.3004 -4.4094 0.8176 21 8 9.6546 -4.3837 0.7696 22 6 7.6659 -5.2064 1.7785 23 6 6.3048 -5.2426 1.8388 24 6 5.5743 -4.4631 0.9169 25 6 4.1740 -4.4560 0.9245 26 1 -0.4850 0.8401 -0.0004 27 1 -1.8021 -3.5035 0.0046 28 1 -0.6796 -5.6945 0.0071 29 1 1.7957 -5.8090 -0.0063 30 1 3.6542 -2.2980 -1.6476 31 1 6.0823 -2.2963 -1.6805 32 1 10.0404 -5.0538 0.1889 33 1 8.2540 -5.7910 2.4705 34 1 5.7987 -5.8518 2.5729 35 1 3.6301 -5.0515 1.6428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244237599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = 25.112728 kcal Electronic energy + Delta-G solvation = -21682.907448 eV Core-core repulsion = 18416.890372 eV Total energy + Delta-G solvation = -3266.017077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80754 -40.23767 -38.96030 -36.81863 -35.59418 -34.49289 -32.98205 -32.18318 -31.04957 -29.55671 -27.56623 -25.19606 -24.63981 -23.56658 -22.77459 -22.37029 -19.87172 -19.45796 -18.82140 -18.07757 -17.34623 -17.03749 -16.27365 -16.17719 -15.89323 -15.66141 -15.10324 -14.82985 -14.62974 -14.38353 -14.12624 -13.94656 -13.77648 -13.23496 -12.95016 -12.87821 -12.75724 -12.67609 -12.38758 -12.26510 -12.02204 -11.56917 -11.49660 -11.27854 -10.42463 -10.21040 -9.74183 -9.51674 -9.44783 -8.82759 -8.34075 -6.50109 -0.56833 -0.18745 0.79000 1.04959 1.18600 1.37460 1.49619 1.50941 1.97805 2.17722 2.67049 2.81417 3.12089 3.62584 3.70291 3.89129 3.93644 3.98013 4.22487 4.27988 4.36420 4.45386 4.51562 4.53625 4.78719 4.87277 4.91398 4.98071 5.14586 5.15875 5.18512 5.33009 5.50838 5.54510 5.57990 5.73363 5.91619 5.97382 6.15465 6.29051 6.66313 6.68987 6.94490 6.95731 8.15995 8.37943 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.005103 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.800488 B = 5485.439566 C = 6862.234831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.029 3.971 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.449 4.449 8 H 0.095 0.905 9 C 0.239 3.761 10 N -0.521 5.521 11 C 0.111 3.889 12 C -0.310 4.310 13 C -0.036 4.036 14 C -0.247 4.247 15 C 0.008 3.992 16 C -0.080 4.080 17 C -0.112 4.112 18 C 0.119 3.881 19 N -0.526 5.526 20 C 0.322 3.678 21 O -0.491 6.491 22 C -0.181 4.181 23 C -0.041 4.041 24 C -0.112 4.112 25 C -0.109 4.109 26 H 0.280 0.720 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.421 0.579 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 -9.349 2.274 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.479 4.479 8 H 0.113 0.887 9 C 0.115 3.885 10 N -0.233 5.233 11 C -0.056 4.056 12 C -0.333 4.333 13 C -0.060 4.060 14 C -0.252 4.252 15 C 0.007 3.993 16 C -0.100 4.100 17 C -0.131 4.131 18 C -0.002 4.002 19 N -0.246 5.246 20 C 0.128 3.872 21 O -0.301 6.301 22 C -0.201 4.201 23 C -0.066 4.066 24 C -0.114 4.114 25 C -0.128 4.128 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.282 0.718 33 H 0.194 0.806 34 H 0.193 0.807 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.093 -7.385 2.015 13.478 hybrid contribution -0.044 -0.649 0.012 0.651 sum 11.049 -8.034 2.026 13.811 Atomic orbital electron populations 1.70198 1.08715 1.29175 1.28587 1.26918 0.95577 1.04244 0.92678 0.85322 0.79589 0.76911 0.79114 1.18111 1.18650 1.19070 1.20072 0.95159 0.90138 1.42525 0.88704 1.18925 0.88344 0.92330 0.88863 1.68703 1.07794 1.28467 1.18370 1.23074 0.99927 0.89180 0.93390 1.21588 0.95035 0.98364 1.18295 1.21281 0.93978 0.96388 0.94380 1.19596 0.91978 0.94361 1.19256 1.18778 0.92085 0.94514 0.93923 1.21123 0.93566 0.97290 0.98023 1.20711 0.93155 0.99784 0.99419 1.18615 0.87852 0.97462 0.96262 1.67356 1.08062 1.22444 1.26761 1.19662 0.84831 0.91375 0.91318 1.84685 1.13692 1.62013 1.69690 1.22055 0.95433 1.01303 1.01323 1.21784 0.93729 0.95137 0.95929 1.18946 0.94599 0.99865 0.97993 1.21425 0.91918 1.00598 0.98863 0.90873 0.84490 0.85272 0.85299 0.85866 0.84383 0.71789 0.80597 0.80723 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.36 11.46 21.86 0.25 -39.11 16 2 C 0.03 1.45 5.50 85.32 0.47 1.92 16 3 Si 0.97 38.19 29.56 68.60 2.03 40.21 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.45 -23.49 7.93 23.35 0.19 -23.31 16 8 H 0.10 4.75 5.23 -2.91 -0.02 4.74 16 9 C 0.24 12.68 6.55 40.37 0.26 12.94 16 10 N -0.52 -28.22 7.85 -188.40 -1.48 -29.69 16 11 C 0.11 5.14 11.17 84.98 0.95 6.09 16 12 C -0.31 -12.63 10.10 22.50 0.23 -12.41 16 13 C -0.04 -1.47 9.65 22.66 0.22 -1.25 16 14 C -0.25 -11.35 5.52 -19.51 -0.11 -11.45 16 15 C 0.01 0.31 5.03 -20.05 -0.10 0.21 16 16 C -0.08 -3.17 7.44 22.27 0.17 -3.00 16 17 C -0.11 -4.04 9.94 22.30 0.22 -3.82 16 18 C 0.12 4.15 6.61 40.36 0.27 4.41 16 19 N -0.53 -17.39 10.36 -301.86 -3.13 -20.52 16 20 C 0.32 8.39 7.72 85.16 0.66 9.05 16 21 O -0.49 -10.18 13.54 -88.38 -1.20 -11.37 16 22 C -0.18 -3.71 9.95 22.25 0.22 -3.48 16 23 C -0.04 -0.92 9.88 22.52 0.22 -0.70 16 24 C -0.11 -3.52 5.74 -21.27 -0.12 -3.64 16 25 C -0.11 -3.73 9.29 22.84 0.21 -3.52 16 26 H 0.28 13.36 8.29 -92.70 -0.77 12.59 16 27 H 0.14 5.59 8.06 -2.91 -0.02 5.56 16 28 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.12 5.10 7.21 -2.91 -0.02 5.08 16 31 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.42 4.06 9.06 -74.06 -0.67 3.39 16 33 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.14 4.23 8.04 -2.91 -0.02 4.21 16 Total: -1.00 -67.69 308.29 0.91 -66.78 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.48 Total: 25.66 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.95 Total: -31.96 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -4.35 Total: -89.32 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.20 Total: -11.37 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Total: -67.69 0.91 -66.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244237599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.892 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds