Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86795 * 119.99688 * 2 1 4 4 H 1.48500 * 109.46926 * 240.00008 * 3 2 1 5 5 H 1.48494 * 109.47441 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47357 * 120.00067 * 3 2 1 7 7 C 1.40010 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99873 * 197.64344 * 7 2 1 9 9 C 1.41011 * 120.00034 * 17.63721 * 7 2 1 10 10 C 1.41329 * 120.54815 * 23.73042 * 9 7 2 11 11 C 1.36568 * 118.41530 * 179.97438 * 10 9 7 12 12 C 1.39963 * 119.46752 * 0.02562 * 11 10 9 13 13 C 1.47849 * 119.45209 * 179.97438 * 12 11 10 14 14 C 1.40606 * 119.81729 * 4.99756 * 13 12 11 15 15 C 1.35710 * 120.88923 * 179.97438 * 14 13 12 16 16 C 1.40773 * 120.12691 * 0.02562 * 15 14 13 17 17 N 1.33713 * 120.74728 * 180.26705 * 16 15 14 18 18 C 1.31595 * 121.33631 * 180.27228 * 17 16 15 19 19 O 1.35541 * 119.19252 * 179.71911 * 18 17 16 20 20 C 1.40045 * 121.61333 * 359.44209 * 18 17 16 21 21 C 1.36295 * 119.85929 * 0.27748 * 20 18 17 22 22 C 1.41091 * 118.25870 * 359.97438 * 21 20 18 23 23 C 1.38702 * 119.81124 * 184.97383 * 13 12 11 24 24 N 1.33061 * 121.08542 * 0.27037 * 12 11 10 25 25 C 1.31242 * 121.72731 * 359.43705 * 24 12 11 26 26 H 0.96997 * 120.00253 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.79537 * 359.95387 * 10 9 7 28 28 H 1.08000 * 120.26460 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.55468 * 359.97438 * 14 13 12 30 30 H 1.08007 * 119.93421 * 179.97438 * 15 14 13 31 31 H 0.96704 * 113.99469 * 269.72873 * 19 18 17 32 32 H 1.07998 * 120.07284 * 180.24858 * 20 18 17 33 33 H 1.07999 * 120.86822 * 179.97438 * 21 20 18 34 34 H 1.08004 * 120.29208 * 0.04994 * 23 13 12 35 35 H 1.08001 * 119.80219 * 180.30509 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6964 -1.2125 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6965 1.2125 7 6 2.0081 -1.2125 -0.0005 8 1 3.0499 -1.2346 0.2829 9 6 1.3528 -2.4049 -0.3711 10 6 0.2052 -2.3676 -1.1951 11 6 -0.3948 -3.5485 -1.5277 12 6 0.1378 -4.7505 -1.0475 13 6 -0.5123 -6.0287 -1.4073 14 6 -1.5908 -6.0350 -2.3093 15 6 -2.2032 -7.1957 -2.6551 16 6 -1.7627 -8.4166 -2.1101 17 7 -2.3535 -9.5680 -2.4462 18 6 -1.9547 -10.7152 -1.9397 19 8 -2.5886 -11.8558 -2.3064 20 6 -0.8877 -10.7872 -1.0355 21 6 -0.2406 -9.6487 -0.6575 22 6 -0.6763 -8.4213 -1.2000 23 6 -0.0545 -7.2150 -0.8533 24 7 1.2161 -4.7613 -0.2680 25 6 1.8312 -3.6537 0.0747 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1881 -1.4276 -1.5531 28 1 -1.2736 -3.5547 -2.1554 29 1 -1.9366 -5.1035 -2.7328 30 1 -3.0306 -7.1825 -3.3492 31 1 -3.3364 -12.0898 -1.7396 32 1 -0.5784 -11.7426 -0.6383 33 1 0.5839 -9.6853 0.0390 34 1 0.7738 -7.2087 -0.1603 35 1 2.7070 -3.6991 0.7050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244238057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = 14.690565 kcal Electronic energy + Delta-G solvation = -20950.366682 eV Core-core repulsion = 17683.897666 eV Total energy + Delta-G solvation = -3266.469016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82979 -40.38005 -39.02433 -36.93773 -35.91935 -34.48456 -32.67215 -32.60317 -31.04933 -30.20043 -27.27453 -25.25597 -24.64348 -23.76229 -22.76018 -22.46221 -19.98032 -19.37574 -18.85987 -18.32002 -17.40450 -17.06337 -16.49760 -16.27697 -15.77673 -15.59356 -15.11176 -14.92911 -14.73441 -14.42313 -14.25303 -13.96373 -13.77896 -13.55782 -13.26656 -13.01048 -12.78089 -12.48808 -12.41224 -12.30089 -12.15630 -11.73069 -11.56428 -11.23895 -10.46571 -10.27276 -10.07645 -9.96812 -9.50432 -8.91284 -8.71024 -6.45041 -0.65870 -0.27217 0.65992 1.02391 1.13095 1.38861 1.48552 1.52381 1.96220 2.14504 2.61271 2.71367 3.12556 3.58449 3.65324 3.69330 3.73491 3.91968 4.03781 4.23545 4.31059 4.40100 4.51914 4.68325 4.73756 4.83039 4.88823 4.99112 5.06655 5.14380 5.15965 5.27348 5.31465 5.50871 5.63620 5.72806 5.86259 5.94321 5.99882 6.42125 6.63496 6.64573 6.71109 6.91809 7.63993 8.11422 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.049923 B = 0.002908 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.734152 B = 9626.798848 C =10095.835898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.459 4.459 8 H 0.093 0.907 9 C 0.043 3.957 10 C -0.164 4.164 11 C -0.123 4.123 12 C -0.018 4.018 13 C -0.008 4.008 14 C -0.093 4.093 15 C -0.099 4.099 16 C 0.116 3.884 17 N -0.521 5.521 18 C 0.324 3.676 19 O -0.490 6.490 20 C -0.179 4.179 21 C -0.044 4.044 22 C -0.114 4.114 23 C -0.098 4.098 24 N -0.456 5.456 25 C -0.035 4.035 26 H 0.297 0.703 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.422 0.578 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -11.651 -0.853 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.111 0.889 9 C 0.038 3.962 10 C -0.189 4.189 11 C -0.143 4.143 12 C -0.153 4.153 13 C -0.009 4.009 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.005 4.005 17 N -0.241 5.241 18 C 0.130 3.870 19 O -0.300 6.300 20 C -0.199 4.199 21 C -0.069 4.069 22 C -0.116 4.116 23 C -0.118 4.118 24 N -0.164 5.164 25 C -0.200 4.200 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.283 0.717 32 H 0.193 0.807 33 H 0.186 0.814 34 H 0.152 0.848 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.466 -12.251 -1.583 12.830 hybrid contribution 0.181 1.702 0.641 1.828 sum -3.285 -10.549 -0.942 11.089 Atomic orbital electron populations 1.69808 1.09328 1.31785 1.31734 1.26968 0.95548 1.05070 0.90813 0.85102 0.78757 0.74700 0.80428 1.18245 1.19052 1.17913 1.19968 0.98880 0.91770 1.38110 0.88852 1.18936 0.92720 0.94531 0.89993 1.21387 0.99363 0.97474 1.00702 1.21598 0.99887 0.92780 1.00068 1.19210 0.97809 0.91923 1.06316 1.18739 0.94661 0.91660 0.95812 1.21097 0.94599 0.99121 0.96535 1.20758 1.00921 0.89482 1.00574 1.18697 0.93868 0.91620 0.96270 1.67391 1.32050 0.98478 1.26204 1.19623 0.91921 0.84837 0.90606 1.84684 1.50375 1.35643 1.59285 1.22060 0.97679 1.01276 0.98915 1.21769 0.98354 0.89978 0.96826 1.18985 0.97544 0.95387 0.99673 1.21313 1.00040 0.90149 1.00277 1.66933 1.07210 1.32093 1.10125 1.22669 1.03436 0.87819 1.06054 0.89154 0.86275 0.85266 0.83822 0.83186 0.71694 0.80667 0.81367 0.84831 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.13 10.92 21.84 0.24 -37.89 16 2 C 0.03 1.57 5.17 85.28 0.44 2.01 16 3 Si 0.99 34.01 29.59 68.60 2.03 36.04 16 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -8.67 7.11 99.48 0.71 -7.97 16 6 H -0.26 -8.46 7.11 99.48 0.71 -7.76 16 7 C -0.46 -22.50 9.06 23.38 0.21 -22.29 16 8 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.04 2.20 5.59 -21.17 -0.12 2.08 16 10 C -0.16 -8.18 8.74 22.64 0.20 -7.98 16 11 C -0.12 -5.57 9.37 22.30 0.21 -5.36 16 12 C -0.02 -0.84 6.73 41.92 0.28 -0.55 16 13 C -0.01 -0.30 5.87 -20.04 -0.12 -0.42 16 14 C -0.09 -3.09 9.31 22.26 0.21 -2.88 16 15 C -0.10 -3.05 9.94 22.30 0.22 -2.82 16 16 C 0.12 3.76 6.61 40.34 0.27 4.03 16 17 N -0.52 -15.97 10.36 -301.89 -3.13 -19.10 16 18 C 0.32 8.01 7.72 85.17 0.66 8.66 16 19 O -0.49 -9.46 13.54 -88.45 -1.20 -10.66 16 20 C -0.18 -3.63 9.95 22.26 0.22 -3.41 16 21 C -0.04 -1.03 9.88 22.52 0.22 -0.81 16 22 C -0.11 -3.56 5.74 -21.27 -0.12 -3.68 16 23 C -0.10 -3.48 9.32 22.82 0.21 -3.27 16 24 N -0.46 -21.82 9.36 -182.73 -1.71 -23.53 16 25 C -0.04 -1.72 10.97 85.45 0.94 -0.78 16 26 H 0.30 12.61 8.30 -92.71 -0.77 11.85 16 27 H 0.12 6.02 6.19 -2.91 -0.02 6.00 16 28 H 0.13 4.94 6.14 -2.91 -0.02 4.92 16 29 H 0.14 4.24 6.12 -2.91 -0.02 4.22 16 30 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.42 3.56 9.06 -74.05 -0.67 2.89 16 32 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.13 4.77 7.50 -2.91 -0.02 4.75 16 35 H 0.14 6.30 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -62.83 308.51 0.65 -62.18 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.49 Total: 30.43 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.93 Total: -37.48 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -4.60 Total: -80.52 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.20 Total: -10.66 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Total: -62.83 0.65 -62.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244238057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.871 kcal (2) G-P(sol) polarization free energy of solvation -62.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds