Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86791 * 120.00305 * 2 1 4 4 H 1.48498 * 109.47516 * 274.98707 * 3 2 1 5 5 H 1.48505 * 109.47313 * 34.98798 * 3 2 1 6 6 H 1.48500 * 109.47496 * 154.98456 * 3 2 1 7 7 C 1.40032 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 186.28734 * 7 2 1 9 9 C 1.41425 * 120.00296 * 6.28953 * 7 2 1 10 10 C 1.40465 * 119.78185 * 173.93999 * 9 7 2 11 11 C 1.39341 * 118.83450 * 180.31242 * 10 9 7 12 12 C 1.48332 * 120.82508 * 179.71819 * 11 10 9 13 13 C 1.40380 * 119.78525 * 359.72162 * 12 11 10 14 14 C 1.35819 * 120.91427 * 179.97438 * 13 12 11 15 15 C 1.40667 * 120.08706 * 0.02562 * 14 13 12 16 16 N 1.33775 * 120.78634 * 180.26764 * 15 14 13 17 17 C 1.31544 * 121.31689 * 180.27102 * 16 15 14 18 18 O 1.35568 * 119.19615 * 179.71945 * 17 16 15 19 19 C 1.40039 * 121.61324 * 359.44836 * 17 16 15 20 20 C 1.36293 * 119.86446 * 0.26775 * 19 17 16 21 21 C 1.41045 * 118.26469 * 0.02562 * 20 19 17 22 22 C 1.38325 * 119.78361 * 179.74521 * 12 11 10 23 23 C 1.40075 * 118.34940 * 359.44160 * 11 10 9 24 24 C 1.38485 * 119.42159 * 0.27733 * 23 11 10 25 25 N 1.31490 * 121.14871 * 0.02562 * 24 23 11 26 26 H 0.97011 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.57974 * 0.05303 * 10 9 7 28 28 H 1.08001 * 119.54049 * 0.02562 * 13 12 11 29 29 H 1.08001 * 119.95849 * 179.97438 * 14 13 12 30 30 H 0.96706 * 113.99821 * 269.73646 * 18 17 16 31 31 H 1.07997 * 120.07228 * 180.25258 * 19 17 16 32 32 H 1.08001 * 120.86839 * 179.97438 * 20 19 17 33 33 H 1.08001 * 120.27928 * 0.02562 * 22 12 11 34 34 H 1.07997 * 120.28473 * 180.25014 * 23 11 10 35 35 H 1.07991 * 119.42524 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3836 2.1072 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4119 0.5920 7 6 2.0074 -1.2128 0.0005 8 1 3.0826 -1.2156 0.1030 9 6 1.3067 -2.4339 -0.1331 10 6 2.0199 -3.6373 -0.2603 11 6 1.3096 -4.8282 -0.3974 12 6 2.0179 -6.1235 -0.5410 13 6 3.4214 -6.1541 -0.5452 14 6 4.0934 -7.3272 -0.6748 15 6 3.3846 -8.5350 -0.8080 16 7 4.0322 -9.6990 -0.9311 17 6 3.3799 -10.8339 -1.0615 18 8 4.0797 -11.9879 -1.1890 19 6 1.9803 -10.8797 -1.0662 20 6 1.2631 -9.7278 -0.9389 21 6 1.9680 -8.5134 -0.8056 22 6 1.2913 -7.2934 -0.6704 23 6 -0.0901 -4.7725 -0.3902 24 6 -0.7214 -3.5474 -0.2544 25 7 -0.0299 -2.4357 -0.1325 26 1 -0.4851 0.8401 0.0004 27 1 3.0999 -3.6390 -0.2561 28 1 3.9744 -5.2320 -0.4432 29 1 5.1734 -7.3328 -0.6765 30 1 4.2825 -12.2259 -2.1041 31 1 1.4702 -11.8259 -1.1708 32 1 0.1832 -9.7443 -0.9408 33 1 0.2116 -7.2669 -0.6676 34 1 -0.6717 -5.6769 -0.4902 35 1 -1.8004 -3.5043 -0.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244239993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = 46.047865 kcal Electronic energy + Delta-G solvation = -21004.841629 eV Core-core repulsion = 17739.732368 eV Total energy + Delta-G solvation = -3265.109261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87209 -38.77404 -37.84562 -35.90505 -33.77927 -33.46781 -31.63792 -30.48558 -29.82292 -28.22178 -25.89648 -24.06506 -23.78584 -22.35927 -21.34655 -20.77163 -19.04559 -17.93502 -17.72543 -16.45480 -16.20266 -15.60976 -15.26732 -14.72134 -14.48593 -14.09431 -13.81823 -13.74680 -13.43926 -13.24923 -13.00323 -12.45636 -12.41064 -11.99234 -11.65916 -11.52078 -11.45254 -11.17431 -11.03714 -10.74425 -10.62114 -10.45791 -9.94354 -9.51664 -9.47841 -9.00130 -8.46640 -7.76907 -7.67854 -7.46188 -6.50426 -4.62369 0.34180 0.73749 1.96466 2.46073 2.66754 3.04571 3.07790 3.09814 3.29645 3.56220 3.88358 4.19449 4.47772 4.64263 4.68943 4.78246 4.90931 5.12656 5.27885 5.37868 5.42854 5.76367 5.79334 5.81061 5.97362 6.00431 6.08199 6.33407 6.39159 6.42290 6.51065 6.62423 6.83539 6.92085 7.04694 7.20691 7.32377 7.40401 7.56854 7.84691 7.88097 8.13006 8.55101 8.80379 10.00349 10.22462 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037150 B = 0.003106 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.512718 B = 9011.768500 C = 9748.325540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.085 0.915 9 C 0.253 3.747 10 C -0.249 4.249 11 C -0.008 4.008 12 C -0.008 4.008 13 C -0.080 4.080 14 C -0.101 4.101 15 C 0.139 3.861 16 N -0.492 5.492 17 C 0.325 3.675 18 O -0.485 6.485 19 C -0.191 4.191 20 C -0.042 4.042 21 C -0.103 4.103 22 C -0.099 4.099 23 C -0.303 4.303 24 C 0.126 3.874 25 N -0.481 5.481 26 H 0.274 0.726 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.399 0.601 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -14.372 -3.346 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.157 4.157 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.103 0.897 9 C 0.129 3.871 10 C -0.272 4.272 11 C -0.014 4.014 12 C -0.009 4.009 13 C -0.099 4.099 14 C -0.120 4.120 15 C 0.018 3.982 16 N -0.211 5.211 17 C 0.131 3.869 18 O -0.292 6.292 19 C -0.212 4.212 20 C -0.068 4.068 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.326 4.326 24 C -0.040 4.040 25 N -0.194 5.194 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.256 0.744 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.116 0.884 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.783 -13.363 -2.625 13.900 hybrid contribution -0.051 -0.288 -0.608 0.674 sum 2.731 -13.651 -3.233 14.292 Atomic orbital electron populations 1.70129 1.07250 1.27947 1.28160 1.26077 0.94917 1.01184 0.93552 0.86298 0.80556 0.80785 0.79138 1.19411 1.20049 1.18435 1.19650 0.94737 0.89500 1.42219 0.89676 1.18558 0.88295 0.91663 0.88601 1.21896 0.98667 0.92876 1.13732 1.18556 0.93224 0.90457 0.99140 1.19133 0.92717 0.93311 0.95696 1.21170 0.93887 0.98311 0.96564 1.20656 1.00272 0.89918 1.01168 1.18515 0.89536 0.91010 0.99128 1.67420 1.41309 0.97868 1.14515 1.19274 0.87142 0.84881 0.95610 1.84743 1.76148 1.35557 1.32775 1.21740 0.93820 1.00012 1.05618 1.21417 1.00505 0.90879 0.93989 1.18794 0.93952 0.94700 1.03023 1.21319 1.00148 0.90127 1.00163 1.21329 0.93274 0.98334 1.19695 1.22465 0.98876 0.88665 0.93968 1.68729 1.07472 1.26569 1.16633 0.91495 0.87746 0.84421 0.84727 0.74376 0.84281 0.83938 0.84623 0.88426 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.54 11.49 55.55 0.64 -17.91 16 2 C 0.07 1.69 5.49 -17.35 -0.10 1.60 16 3 Si 0.91 18.06 29.56 -169.99 -5.03 13.03 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.43 -11.10 9.14 -37.70 -0.34 -11.45 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.25 6.66 6.55 -85.02 -0.56 6.11 16 10 C -0.25 -5.76 9.22 -38.33 -0.35 -6.12 16 11 C -0.01 -0.16 5.90 -104.64 -0.62 -0.78 16 12 C -0.01 -0.15 5.87 -104.91 -0.62 -0.77 16 13 C -0.08 -1.28 9.34 -39.64 -0.37 -1.65 16 14 C -0.10 -1.53 9.95 -39.53 -0.39 -1.92 16 15 C 0.14 2.17 6.60 -84.79 -0.56 1.61 16 16 N -0.49 -7.51 10.36 -11.00 -0.11 -7.62 16 17 C 0.32 4.14 7.72 -17.00 -0.13 4.01 16 18 O -0.49 -5.07 13.54 -18.40 -0.25 -5.32 16 19 C -0.19 -2.05 9.95 -39.61 -0.39 -2.44 16 20 C -0.04 -0.49 9.88 -39.22 -0.39 -0.87 16 21 C -0.10 -1.50 5.74 -106.80 -0.61 -2.11 16 22 C -0.10 -1.54 9.20 -38.83 -0.36 -1.89 16 23 C -0.30 -6.38 9.50 -38.80 -0.37 -6.75 16 24 C 0.13 2.91 11.17 -17.61 -0.20 2.71 16 25 N -0.48 -12.85 7.88 -11.21 -0.09 -12.94 16 26 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 27 H 0.10 2.19 6.29 -52.49 -0.33 1.86 16 28 H 0.14 2.09 6.23 -52.49 -0.33 1.76 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.40 2.04 9.06 45.56 0.41 2.45 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.91 6.24 -52.49 -0.33 1.58 16 34 H 0.10 1.75 6.29 -52.49 -0.33 1.42 16 35 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -31.08 307.86 -8.69 -39.78 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.14 Total: 7.05 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -6.36 Total: -20.71 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.44 Total: -38.47 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.25 Total: -5.32 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.08 -8.69 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244239993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.827 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds