Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86791 * 120.00305 * 2 1 4 4 H 1.48498 * 109.47516 * 274.98707 * 3 2 1 5 5 H 1.48505 * 109.47313 * 34.98798 * 3 2 1 6 6 H 1.48500 * 109.47496 * 154.98456 * 3 2 1 7 7 C 1.40032 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 186.28734 * 7 2 1 9 9 C 1.41425 * 120.00296 * 6.28953 * 7 2 1 10 10 C 1.40465 * 119.78185 * 173.93999 * 9 7 2 11 11 C 1.39341 * 118.83450 * 180.31242 * 10 9 7 12 12 C 1.48332 * 120.82508 * 179.71819 * 11 10 9 13 13 C 1.40380 * 119.78525 * 359.72162 * 12 11 10 14 14 C 1.35819 * 120.91427 * 179.97438 * 13 12 11 15 15 C 1.40667 * 120.08706 * 0.02562 * 14 13 12 16 16 N 1.33775 * 120.78634 * 180.26764 * 15 14 13 17 17 C 1.31544 * 121.31689 * 180.27102 * 16 15 14 18 18 O 1.35568 * 119.19615 * 179.71945 * 17 16 15 19 19 C 1.40039 * 121.61324 * 359.44836 * 17 16 15 20 20 C 1.36293 * 119.86446 * 0.26775 * 19 17 16 21 21 C 1.41045 * 118.26469 * 0.02562 * 20 19 17 22 22 C 1.38325 * 119.78361 * 179.74521 * 12 11 10 23 23 C 1.40075 * 118.34940 * 359.44160 * 11 10 9 24 24 C 1.38485 * 119.42159 * 0.27733 * 23 11 10 25 25 N 1.31490 * 121.14871 * 0.02562 * 24 23 11 26 26 H 0.97011 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.57974 * 0.05303 * 10 9 7 28 28 H 1.08001 * 119.54049 * 0.02562 * 13 12 11 29 29 H 1.08001 * 119.95849 * 179.97438 * 14 13 12 30 30 H 0.96706 * 113.99821 * 269.73646 * 18 17 16 31 31 H 1.07997 * 120.07228 * 180.25258 * 19 17 16 32 32 H 1.08001 * 120.86839 * 179.97438 * 20 19 17 33 33 H 1.08001 * 120.27928 * 0.02562 * 22 12 11 34 34 H 1.07997 * 120.28473 * 180.25014 * 23 11 10 35 35 H 1.07991 * 119.42524 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3836 2.1072 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4119 0.5920 7 6 2.0074 -1.2128 0.0005 8 1 3.0826 -1.2156 0.1030 9 6 1.3067 -2.4339 -0.1331 10 6 2.0199 -3.6373 -0.2603 11 6 1.3096 -4.8282 -0.3974 12 6 2.0179 -6.1235 -0.5410 13 6 3.4214 -6.1541 -0.5452 14 6 4.0934 -7.3272 -0.6748 15 6 3.3846 -8.5350 -0.8080 16 7 4.0322 -9.6990 -0.9311 17 6 3.3799 -10.8339 -1.0615 18 8 4.0797 -11.9879 -1.1890 19 6 1.9803 -10.8797 -1.0662 20 6 1.2631 -9.7278 -0.9389 21 6 1.9680 -8.5134 -0.8056 22 6 1.2913 -7.2934 -0.6704 23 6 -0.0901 -4.7725 -0.3902 24 6 -0.7214 -3.5474 -0.2544 25 7 -0.0299 -2.4357 -0.1325 26 1 -0.4851 0.8401 0.0004 27 1 3.0999 -3.6390 -0.2561 28 1 3.9744 -5.2320 -0.4432 29 1 5.1734 -7.3328 -0.6765 30 1 4.2825 -12.2259 -2.1041 31 1 1.4702 -11.8259 -1.1708 32 1 0.1832 -9.7443 -0.9408 33 1 0.2116 -7.2669 -0.6676 34 1 -0.6717 -5.6769 -0.4902 35 1 -1.8004 -3.5043 -0.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244239993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = 24.714392 kcal Electronic energy + Delta-G solvation = -21005.766718 eV Core-core repulsion = 17739.732368 eV Total energy + Delta-G solvation = -3266.034350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92797 -40.25548 -39.08317 -37.02600 -35.46968 -34.58877 -33.13478 -32.06385 -31.12315 -29.56761 -27.68814 -25.18328 -25.04991 -23.66591 -22.83160 -22.31335 -20.13847 -19.24198 -18.98964 -17.83840 -17.35372 -17.04779 -16.60868 -16.19368 -15.78906 -15.53848 -15.15076 -14.89701 -14.68339 -14.46604 -14.33906 -14.15617 -13.77144 -13.25784 -12.98222 -12.92513 -12.80220 -12.58508 -12.50101 -12.37092 -11.99602 -11.62331 -11.61342 -11.21831 -10.52937 -10.44913 -9.59644 -9.58588 -9.50765 -8.84753 -8.30927 -6.52346 -0.74229 -0.34005 0.77763 0.89877 1.16780 1.40952 1.52080 1.55115 2.03318 2.22821 2.59662 2.84190 3.07947 3.51029 3.59572 3.68792 3.85157 3.95173 4.04230 4.16745 4.21070 4.35408 4.40489 4.63753 4.75874 4.77932 4.85459 4.92212 5.04890 5.10997 5.17913 5.22818 5.41492 5.44666 5.48722 5.61039 5.78243 5.90674 6.13640 6.28207 6.60550 6.72338 6.87293 6.94561 8.18646 8.44812 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037150 B = 0.003106 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.512718 B = 9011.768500 C = 9748.325540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.024 3.976 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.471 4.471 8 H 0.089 0.911 9 C 0.223 3.777 10 C -0.273 4.273 11 C 0.000 4.000 12 C -0.046 4.046 13 C -0.086 4.086 14 C -0.105 4.105 15 C 0.129 3.871 16 N -0.529 5.529 17 C 0.333 3.667 18 O -0.491 6.491 19 C -0.182 4.182 20 C -0.034 4.034 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.294 4.294 24 C 0.104 3.896 25 N -0.522 5.522 26 H 0.279 0.721 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.423 0.577 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -17.392 -3.867 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.502 4.502 8 H 0.107 0.893 9 C 0.099 3.901 10 C -0.295 4.295 11 C -0.006 4.006 12 C -0.046 4.046 13 C -0.106 4.106 14 C -0.124 4.124 15 C 0.008 3.992 16 N -0.249 5.249 17 C 0.139 3.861 18 O -0.301 6.301 19 C -0.202 4.202 20 C -0.059 4.059 21 C -0.123 4.123 22 C -0.096 4.096 23 C -0.317 4.317 24 C -0.059 4.059 25 N -0.236 5.236 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.153 0.847 29 H 0.164 0.836 30 H 0.285 0.715 31 H 0.196 0.804 32 H 0.197 0.803 33 H 0.172 0.828 34 H 0.153 0.847 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.490 -16.425 -3.167 16.912 hybrid contribution 0.052 0.142 -0.504 0.526 sum 2.542 -16.283 -3.671 16.884 Atomic orbital electron populations 1.70227 1.08888 1.29110 1.29699 1.26981 0.95719 1.04539 0.92480 0.85137 0.79144 0.75831 0.79245 1.18905 1.19245 1.17802 1.19990 0.95192 0.90597 1.44427 0.89309 1.18974 0.88807 0.93053 0.89297 1.22023 0.99340 0.93048 1.15092 1.18890 0.93562 0.91447 0.96740 1.18994 0.93365 0.92477 0.99805 1.21120 0.93534 0.98730 0.97224 1.20767 1.00902 0.89705 1.01000 1.18703 0.90328 0.91273 0.98890 1.67423 1.42246 0.98520 1.16733 1.19714 0.88322 0.84698 0.93326 1.84690 1.76055 1.34297 1.35086 1.22113 0.92819 1.01477 1.03813 1.21833 1.02294 0.89558 0.92179 1.18982 0.93774 0.95630 1.03925 1.21504 1.00868 0.89667 0.97611 1.21708 0.93606 0.98921 1.17447 1.22940 0.99984 0.88960 0.94062 1.68654 1.08037 1.28549 1.18326 0.91040 0.86851 0.84717 0.83617 0.71487 0.80422 0.80315 0.82834 0.84698 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.05 11.49 21.84 0.25 -40.80 16 2 C 0.02 1.25 5.49 85.29 0.47 1.71 16 3 Si 0.99 38.18 29.56 68.60 2.03 40.21 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.47 -25.60 9.14 23.49 0.21 -25.38 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.22 12.37 6.55 40.19 0.26 12.63 16 10 C -0.27 -13.19 9.22 23.08 0.21 -12.98 16 11 C 0.00 -0.01 5.90 -19.88 -0.12 -0.12 16 12 C -0.05 -1.63 5.87 -20.05 -0.12 -1.74 16 13 C -0.09 -2.81 9.34 22.23 0.21 -2.60 16 14 C -0.11 -3.13 9.95 22.30 0.22 -2.91 16 15 C 0.13 3.81 6.60 40.29 0.27 4.08 16 16 N -0.53 -15.03 10.36 -302.00 -3.13 -18.16 16 17 C 0.33 7.33 7.72 85.17 0.66 7.98 16 18 O -0.49 -8.45 13.54 -88.75 -1.20 -9.65 16 19 C -0.18 -3.00 9.95 22.25 0.22 -2.77 16 20 C -0.03 -0.61 9.88 22.50 0.22 -0.39 16 21 C -0.12 -3.19 5.74 -21.27 -0.12 -3.31 16 22 C -0.08 -2.24 9.20 22.76 0.21 -2.03 16 23 C -0.29 -12.18 9.50 22.77 0.22 -11.96 16 24 C 0.10 4.90 11.17 84.80 0.95 5.85 16 25 N -0.52 -29.07 7.88 -189.38 -1.49 -30.56 16 26 H 0.28 13.63 8.29 -92.70 -0.77 12.86 16 27 H 0.11 5.05 6.29 -2.91 -0.02 5.03 16 28 H 0.14 4.30 6.23 -2.91 -0.02 4.28 16 29 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.42 2.72 9.06 -74.05 -0.67 2.05 16 31 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.15 3.73 6.24 -2.91 -0.02 3.71 16 34 H 0.14 4.44 6.29 -2.91 -0.02 4.42 16 35 H 0.14 5.77 8.06 -2.92 -0.02 5.75 16 Total: -1.00 -71.13 307.86 0.92 -70.22 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.49 Total: 22.70 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 3.97 Total: -33.95 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -4.37 Total: -89.52 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.20 Total: -9.65 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -71.13 0.92 -70.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244239993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.931 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds