Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48503 * 109.47063 * 269.99985 * 3 2 1 5 5 H 1.48502 * 109.47237 * 29.99714 * 3 2 1 6 6 H 1.48494 * 109.47253 * 149.99848 * 3 2 1 7 7 C 1.40050 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00051 * 168.67701 * 7 2 1 9 9 C 1.40838 * 119.99898 * 348.66958 * 7 2 1 10 10 C 1.41139 * 120.72531 * 331.33763 * 9 7 2 11 11 C 1.36854 * 118.40250 * 180.23789 * 10 9 7 12 12 C 1.38909 * 119.80951 * 359.46012 * 11 10 9 13 13 N 1.31700 * 121.51366 * 0.28278 * 12 11 10 14 14 C 1.32650 * 121.71797 * 359.97438 * 13 12 11 15 15 C 1.47672 * 119.99996 * 180.02562 * 14 13 12 16 16 C 1.40675 * 119.73527 * 136.12811 * 15 14 13 17 17 C 1.35823 * 120.84182 * 180.02562 * 16 15 14 18 18 C 1.40449 * 119.85261 * 359.97438 * 17 16 15 19 19 C 1.40681 * 121.91843 * 179.97438 * 18 17 16 20 20 C 1.36188 * 118.88906 * 180.02562 * 19 18 17 21 21 N 1.32627 * 121.99864 * 359.97438 * 20 19 18 22 22 C 1.31776 * 122.62816 * 0.02562 * 21 20 19 23 23 O 1.35446 * 120.12772 * 179.97438 * 22 21 20 24 24 C 1.41265 * 119.74484 * 359.97438 * 22 21 20 25 25 C 1.38877 * 119.72852 * 315.85475 * 15 14 13 26 26 H 0.97004 * 119.99995 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.79839 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.09508 * 179.73771 * 11 10 9 29 29 H 1.07996 * 119.24263 * 180.25278 * 12 11 10 30 30 H 1.08007 * 119.57520 * 359.97438 * 16 15 14 31 31 H 1.07999 * 120.07184 * 179.97438 * 17 16 15 32 32 H 1.08000 * 120.55849 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.00051 * 179.97438 * 20 19 18 34 34 H 0.96703 * 114.00085 * 270.02064 * 23 22 21 35 35 H 1.07997 * 120.34229 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0463 -1.4001 5 1 1.4394 2.6527 0.7000 6 1 3.5394 1.4401 0.7000 7 6 2.0081 -1.2129 -0.0005 8 1 3.0723 -1.2219 -0.1842 9 6 1.3245 -2.4208 0.2385 10 6 0.1605 -2.4449 1.0364 11 6 -0.4632 -3.6456 1.2417 12 6 0.0486 -4.7981 0.6593 13 7 1.1322 -4.7686 -0.0887 14 6 1.7872 -3.6392 -0.3231 15 6 2.9981 -3.6497 -1.1683 16 6 3.1779 -2.6508 -2.1423 17 6 4.2828 -2.6392 -2.9321 18 6 5.2621 -3.6342 -2.7790 19 6 6.4226 -3.6642 -3.5736 20 6 7.3320 -4.6579 -3.3729 21 7 7.1562 -5.5959 -2.4519 22 6 6.0961 -5.6342 -1.6701 23 8 5.9679 -6.6162 -0.7461 24 6 5.0938 -4.6472 -1.7995 25 6 3.9530 -4.6425 -0.9911 26 1 -0.4850 0.8401 0.0004 27 1 -0.2262 -1.5382 1.4778 28 1 -1.3534 -3.6962 1.8512 29 1 -0.4532 -5.7401 0.8241 30 1 2.4273 -1.8837 -2.2641 31 1 4.4080 -1.8666 -3.6763 32 1 6.5893 -2.9122 -4.3307 33 1 8.2234 -4.6829 -3.9822 34 1 5.5119 -7.4048 -1.0708 35 1 3.8141 -5.4051 -0.2391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244311325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = 33.932835 kcal Electronic energy + Delta-G solvation = -21929.148315 eV Core-core repulsion = 18663.513707 eV Total energy + Delta-G solvation = -3265.634608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57323 -38.72205 -37.33405 -36.36812 -34.32424 -32.29573 -31.21407 -30.76930 -29.87245 -28.32101 -25.84298 -23.94631 -23.27675 -22.04779 -21.34995 -20.83794 -18.65589 -17.59769 -17.18386 -16.87208 -15.96788 -15.60732 -15.13442 -14.84642 -14.51099 -14.15331 -13.72914 -13.51633 -13.35564 -13.14903 -12.63609 -12.39776 -12.00270 -11.71157 -11.57730 -11.53333 -11.45804 -11.28985 -11.19148 -10.81961 -10.66477 -9.99445 -9.66624 -9.58889 -9.19403 -8.77693 -8.31054 -8.21498 -7.92342 -7.30451 -7.01590 -4.69178 0.63804 1.24472 2.17787 2.49590 2.76002 2.90658 2.95205 3.04084 3.42984 3.69525 3.81925 4.38309 4.44189 4.87663 4.99175 5.14307 5.24669 5.35468 5.52998 5.58473 5.63417 5.92931 6.06905 6.12739 6.16129 6.20992 6.40837 6.47969 6.59056 6.69524 6.78366 6.85488 6.87477 7.06551 7.21134 7.30961 7.55728 7.66153 7.69173 7.74784 8.16101 8.20966 8.43489 8.50196 9.40690 9.84333 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.005697 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.009015 B = 4913.297458 C = 6350.805662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.440 4.440 8 H 0.089 0.911 9 C 0.087 3.913 10 C -0.124 4.124 11 C -0.149 4.149 12 C -0.027 4.027 13 N -0.450 5.450 14 C 0.003 3.997 15 C 0.033 3.967 16 C -0.054 4.054 17 C -0.136 4.136 18 C -0.025 4.025 19 C -0.161 4.161 20 C 0.078 3.922 21 N -0.518 5.518 22 C 0.345 3.655 23 O -0.477 6.477 24 C -0.113 4.113 25 C -0.089 4.089 26 H 0.287 0.713 27 H 0.129 0.871 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.400 0.600 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -2.036 -4.617 7.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.106 0.894 9 C 0.082 3.918 10 C -0.150 4.150 11 C -0.169 4.169 12 C -0.189 4.189 13 N -0.158 5.158 14 C -0.134 4.134 15 C 0.032 3.968 16 C -0.074 4.074 17 C -0.154 4.154 18 C -0.030 4.030 19 C -0.181 4.181 20 C -0.065 4.065 21 N -0.238 5.238 22 C 0.153 3.847 23 O -0.284 6.284 24 C -0.116 4.116 25 C -0.110 4.110 26 H 0.098 0.902 27 H 0.146 0.854 28 H 0.119 0.881 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.258 0.742 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.457 -2.846 -4.585 8.415 hybrid contribution -1.042 1.889 0.128 2.161 sum 5.414 -0.957 -4.456 7.077 Atomic orbital electron populations 1.69736 1.07685 1.30027 1.33473 1.26014 0.94867 1.01656 0.92075 0.86235 0.80698 0.79927 0.79745 1.18969 1.19792 1.18093 1.19611 0.96553 0.90069 1.40630 0.89351 1.18335 0.91845 0.92470 0.89101 1.21450 0.97638 0.96881 0.99026 1.21479 0.99863 0.94565 1.00985 1.21700 0.96803 0.96901 1.03459 1.67032 1.06841 1.29253 1.12660 1.19434 0.98905 0.90053 1.05036 1.18528 0.92355 0.92847 0.93044 1.21413 0.97022 0.97072 0.91857 1.20761 0.94454 0.98788 1.01445 1.18077 0.95118 0.94733 0.95064 1.21811 0.94844 1.00397 1.01081 1.21698 0.99085 0.90755 0.94969 1.66874 1.23309 1.27615 1.05957 1.19320 0.88662 0.89214 0.87508 1.84678 1.80816 1.28147 1.34747 1.18870 0.96326 0.97579 0.98821 1.21249 0.91590 0.99404 0.98758 0.90221 0.85368 0.88118 0.85944 0.84003 0.85458 0.84788 0.83353 0.74216 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.09 10.90 55.55 0.61 -17.48 16 2 C 0.07 1.64 5.26 -17.32 -0.09 1.55 16 3 Si 0.91 16.92 29.58 -169.99 -5.03 11.89 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.44 -10.35 6.67 -37.92 -0.25 -10.61 16 8 H 0.09 2.04 6.51 -52.49 -0.34 1.70 16 9 C 0.09 2.13 5.54 -106.40 -0.59 1.54 16 10 C -0.12 -2.96 8.71 -38.98 -0.34 -3.30 16 11 C -0.15 -3.22 10.03 -39.83 -0.40 -3.62 16 12 C -0.03 -0.58 11.16 -17.36 -0.19 -0.77 16 13 N -0.45 -10.53 10.14 -9.19 -0.09 -10.62 16 14 C 0.00 0.06 6.40 -82.25 -0.53 -0.46 16 15 C 0.03 0.70 5.25 -104.89 -0.55 0.15 16 16 C -0.05 -1.04 7.74 -39.53 -0.31 -1.35 16 17 C -0.14 -2.25 9.77 -39.61 -0.39 -2.64 16 18 C -0.02 -0.42 5.75 -106.74 -0.61 -1.03 16 19 C -0.16 -2.23 9.86 -39.40 -0.39 -2.62 16 20 C 0.08 1.09 11.06 -17.95 -0.20 0.89 16 21 N -0.52 -8.52 10.33 -13.18 -0.14 -8.65 16 22 C 0.35 5.84 7.82 -16.43 -0.13 5.71 16 23 O -0.48 -7.19 12.84 -18.03 -0.23 -7.42 16 24 C -0.11 -2.03 5.75 -106.75 -0.61 -2.64 16 25 C -0.09 -1.74 9.21 -38.75 -0.36 -2.10 16 26 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 27 H 0.13 3.09 6.34 -52.49 -0.33 2.76 16 28 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.14 2.83 6.72 -52.48 -0.35 2.48 16 31 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.40 3.99 9.06 45.56 0.41 4.41 16 35 H 0.13 2.57 7.67 -52.49 -0.40 2.17 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -28.02 305.99 -8.47 -36.50 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -2.26 Total: 12.46 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -5.94 Total: -21.28 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.38 Total: -36.76 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.23 Total: -7.42 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.02 -8.47 -36.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244311325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.431 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds