Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48503 * 109.47063 * 269.99985 * 3 2 1 5 5 H 1.48502 * 109.47237 * 29.99714 * 3 2 1 6 6 H 1.48494 * 109.47253 * 149.99848 * 3 2 1 7 7 C 1.40050 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00051 * 168.67701 * 7 2 1 9 9 C 1.40838 * 119.99898 * 348.66958 * 7 2 1 10 10 C 1.41139 * 120.72531 * 331.33763 * 9 7 2 11 11 C 1.36854 * 118.40250 * 180.23789 * 10 9 7 12 12 C 1.38909 * 119.80951 * 359.46012 * 11 10 9 13 13 N 1.31700 * 121.51366 * 0.28278 * 12 11 10 14 14 C 1.32650 * 121.71797 * 359.97438 * 13 12 11 15 15 C 1.47672 * 119.99996 * 180.02562 * 14 13 12 16 16 C 1.40675 * 119.73527 * 136.12811 * 15 14 13 17 17 C 1.35823 * 120.84182 * 180.02562 * 16 15 14 18 18 C 1.40449 * 119.85261 * 359.97438 * 17 16 15 19 19 C 1.40681 * 121.91843 * 179.97438 * 18 17 16 20 20 C 1.36188 * 118.88906 * 180.02562 * 19 18 17 21 21 N 1.32627 * 121.99864 * 359.97438 * 20 19 18 22 22 C 1.31776 * 122.62816 * 0.02562 * 21 20 19 23 23 O 1.35446 * 120.12772 * 179.97438 * 22 21 20 24 24 C 1.41265 * 119.74484 * 359.97438 * 22 21 20 25 25 C 1.38877 * 119.72852 * 315.85475 * 15 14 13 26 26 H 0.97004 * 119.99995 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.79839 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.09508 * 179.73771 * 11 10 9 29 29 H 1.07996 * 119.24263 * 180.25278 * 12 11 10 30 30 H 1.08007 * 119.57520 * 359.97438 * 16 15 14 31 31 H 1.07999 * 120.07184 * 179.97438 * 17 16 15 32 32 H 1.08000 * 120.55849 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.00051 * 179.97438 * 20 19 18 34 34 H 0.96703 * 114.00085 * 270.02064 * 23 22 21 35 35 H 1.07997 * 120.34229 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0463 -1.4001 5 1 1.4394 2.6527 0.7000 6 1 3.5394 1.4401 0.7000 7 6 2.0081 -1.2129 -0.0005 8 1 3.0723 -1.2219 -0.1842 9 6 1.3245 -2.4208 0.2385 10 6 0.1605 -2.4449 1.0364 11 6 -0.4632 -3.6456 1.2417 12 6 0.0486 -4.7981 0.6593 13 7 1.1322 -4.7686 -0.0887 14 6 1.7872 -3.6392 -0.3231 15 6 2.9981 -3.6497 -1.1683 16 6 3.1779 -2.6508 -2.1423 17 6 4.2828 -2.6392 -2.9321 18 6 5.2621 -3.6342 -2.7790 19 6 6.4226 -3.6642 -3.5736 20 6 7.3320 -4.6579 -3.3729 21 7 7.1562 -5.5959 -2.4519 22 6 6.0961 -5.6342 -1.6701 23 8 5.9679 -6.6162 -0.7461 24 6 5.0938 -4.6472 -1.7995 25 6 3.9530 -4.6425 -0.9911 26 1 -0.4850 0.8401 0.0004 27 1 -0.2262 -1.5382 1.4778 28 1 -1.3534 -3.6962 1.8512 29 1 -0.4532 -5.7401 0.8241 30 1 2.4273 -1.8837 -2.2641 31 1 4.4080 -1.8666 -3.6763 32 1 6.5893 -2.9122 -4.3307 33 1 8.2234 -4.6829 -3.9822 34 1 5.5119 -7.4048 -1.0708 35 1 3.8141 -5.4051 -0.2391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244311325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = 15.581106 kcal Electronic energy + Delta-G solvation = -21929.944106 eV Core-core repulsion = 18663.513707 eV Total energy + Delta-G solvation = -3266.430399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85360 -40.37279 -38.63311 -37.65010 -36.03603 -33.72331 -32.66799 -32.43701 -31.29024 -29.75341 -27.54267 -25.35291 -24.64613 -23.56126 -22.88048 -22.39546 -19.88633 -19.31669 -18.63494 -18.15934 -17.40455 -17.07411 -16.56544 -16.28952 -16.05208 -15.67522 -15.04481 -14.90089 -14.79391 -14.40514 -14.19315 -14.00398 -13.54680 -13.30779 -13.20416 -12.92899 -12.79385 -12.75622 -12.58839 -12.30599 -12.09799 -11.65929 -11.23804 -10.96383 -10.43833 -10.35592 -9.97368 -9.92913 -9.48513 -8.80396 -8.61525 -6.45720 -0.63862 -0.11519 0.67438 0.94515 1.12323 1.38431 1.47784 1.52439 2.12870 2.15453 2.63680 2.70882 3.09358 3.62131 3.65755 3.77902 3.80432 3.96633 4.14826 4.30562 4.47465 4.50920 4.57547 4.59301 4.77918 4.87041 4.90891 4.95070 5.05923 5.10708 5.20298 5.30984 5.52423 5.63173 5.69730 5.78830 5.88524 5.98441 6.01747 6.45551 6.61896 6.69444 6.75406 6.98032 7.65177 8.19823 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.005697 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.009015 B = 4913.297458 C = 6350.805662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.041 3.959 3 Si 0.976 3.024 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.059 3.941 10 C -0.149 4.149 11 C -0.148 4.148 12 C -0.036 4.036 13 N -0.468 5.468 14 C -0.010 4.010 15 C 0.004 3.996 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.035 4.035 19 C -0.149 4.149 20 C 0.079 3.921 21 N -0.528 5.528 22 C 0.336 3.664 23 O -0.487 6.487 24 C -0.129 4.129 25 C -0.091 4.091 26 H 0.294 0.706 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.190 0.810 34 H 0.418 0.582 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -1.412 -6.362 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.176 4.176 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.054 3.946 10 C -0.175 4.175 11 C -0.168 4.168 12 C -0.198 4.198 13 N -0.176 5.176 14 C -0.147 4.147 15 C 0.003 3.997 16 C -0.094 4.094 17 C -0.134 4.134 18 C -0.040 4.040 19 C -0.169 4.169 20 C -0.064 4.064 21 N -0.248 5.248 22 C 0.144 3.856 23 O -0.297 6.297 24 C -0.132 4.132 25 C -0.112 4.112 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.171 0.829 30 H 0.144 0.856 31 H 0.183 0.817 32 H 0.194 0.806 33 H 0.207 0.793 34 H 0.280 0.720 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.460 -2.259 -6.328 10.804 hybrid contribution -1.555 1.548 0.592 2.273 sum 6.904 -0.711 -5.736 9.005 Atomic orbital electron populations 1.69778 1.08915 1.31213 1.33916 1.26739 0.95480 1.04258 0.91164 0.85263 0.79033 0.75948 0.80125 1.17797 1.19047 1.18593 1.19676 0.96387 0.90658 1.41754 0.89790 1.18687 0.92638 0.93446 0.89817 1.21505 0.98479 0.97435 1.00067 1.21768 1.00489 0.93772 1.00778 1.22263 0.96475 0.98221 1.02797 1.67107 1.07581 1.29429 1.13436 1.19883 0.99798 0.89906 1.05108 1.18588 0.92278 0.94601 0.94261 1.21278 0.98232 0.96874 0.93025 1.21104 0.92762 0.98965 1.00614 1.18430 0.96287 0.94202 0.95065 1.22214 0.92935 1.00967 1.00753 1.22449 1.00229 0.89624 0.94100 1.66996 1.22825 1.28644 1.06379 1.19366 0.88748 0.89522 0.87994 1.84622 1.81130 1.28867 1.35046 1.19024 0.96094 0.98789 0.99318 1.21143 0.92256 0.98767 0.99047 0.89500 0.86338 0.85119 0.82948 0.85565 0.81742 0.80582 0.79321 0.72022 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.43 10.90 21.85 0.24 -38.20 16 2 C 0.04 1.85 5.26 85.29 0.45 2.30 16 3 Si 0.98 34.63 29.58 68.60 2.03 36.66 16 4 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.27 -9.05 7.11 99.48 0.71 -8.35 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.46 -22.32 6.67 23.35 0.16 -22.16 16 8 H 0.08 4.05 6.51 -2.91 -0.02 4.03 16 9 C 0.06 3.01 5.54 -21.02 -0.12 2.89 16 10 C -0.15 -7.39 8.71 22.66 0.20 -7.19 16 11 C -0.15 -6.53 10.03 22.11 0.22 -6.31 16 12 C -0.04 -1.61 11.16 84.87 0.95 -0.66 16 13 N -0.47 -22.60 10.14 -182.97 -1.86 -24.46 16 14 C -0.01 -0.49 6.40 42.43 0.27 -0.21 16 15 C 0.00 0.16 5.25 -20.04 -0.11 0.06 16 16 C -0.07 -2.91 7.74 22.30 0.17 -2.74 16 17 C -0.12 -3.63 9.77 22.25 0.22 -3.42 16 18 C -0.03 -1.08 5.75 -21.23 -0.12 -1.20 16 19 C -0.15 -3.45 9.86 22.39 0.22 -3.23 16 20 C 0.08 1.86 11.06 84.10 0.93 2.79 16 21 N -0.53 -15.99 10.33 -308.86 -3.19 -19.18 16 22 C 0.34 10.99 7.82 85.45 0.67 11.66 16 23 O -0.49 -14.50 12.84 -87.43 -1.12 -15.62 16 24 C -0.13 -4.56 5.75 -21.24 -0.12 -4.68 16 25 C -0.09 -3.68 9.21 22.81 0.21 -3.47 16 26 H 0.29 12.50 8.30 -92.70 -0.77 11.73 16 27 H 0.12 5.99 6.34 -2.91 -0.02 5.97 16 28 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.15 5.61 8.06 -2.91 -0.02 5.58 16 30 H 0.13 5.25 6.72 -2.91 -0.02 5.23 16 31 H 0.17 3.78 8.06 -2.91 -0.02 3.75 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.42 8.24 9.06 -74.05 -0.67 7.57 16 35 H 0.12 4.99 7.67 -2.91 -0.02 4.96 16 Total: -1.00 -62.95 305.99 0.78 -62.17 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.48 Total: 34.19 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 4.20 Total: -35.57 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -4.81 Total: -81.84 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.12 Total: -15.62 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Total: -62.95 0.78 -62.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244311325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.753 kcal (2) G-P(sol) polarization free energy of solvation -62.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds