Wall clock time and date at job start Tue Mar 31 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86796 * 120.00371 * 2 1 4 4 H 1.48497 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46738 * 300.00104 * 3 2 1 6 6 H 1.48504 * 109.47112 * 59.99746 * 3 2 1 7 7 C 1.40130 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.40740 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.33715 * 119.94730 * 0.02562 * 9 7 2 11 11 C 1.31264 * 121.63632 * 179.97438 * 10 9 7 12 12 C 1.39086 * 121.35955 * 359.97438 * 11 10 9 13 13 C 1.38324 * 119.74239 * 359.97438 * 12 11 10 14 14 C 1.39775 * 118.46950 * 0.02562 * 13 12 11 15 15 C 1.47671 * 120.65881 * 180.02562 * 14 13 12 16 16 C 1.40673 * 119.73476 * 129.70280 * 15 14 13 17 17 C 1.35816 * 120.83024 * 179.70837 * 16 15 14 18 18 C 1.40464 * 119.86215 * 0.56226 * 17 16 15 19 19 C 1.40670 * 121.92165 * 179.74114 * 18 17 16 20 20 C 1.36205 * 118.89345 * 179.97438 * 19 18 17 21 21 N 1.32625 * 121.99845 * 0.02860 * 20 19 18 22 22 C 1.31778 * 122.62497 * 359.94939 * 21 20 19 23 23 O 1.35449 * 120.12659 * 180.02562 * 22 21 20 24 24 C 1.41276 * 119.74414 * 0.04483 * 22 21 20 25 25 C 1.38925 * 119.72614 * 309.97598 * 15 14 13 26 26 H 0.96998 * 119.99688 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.32474 * 179.72646 * 11 10 9 28 28 H 1.08008 * 120.13107 * 179.97438 * 12 11 10 29 29 H 1.07999 * 120.76582 * 180.02562 * 13 12 11 30 30 H 1.07999 * 119.58292 * 359.97438 * 16 15 14 31 31 H 1.08003 * 120.06656 * 180.28415 * 17 16 15 32 32 H 1.08003 * 120.55060 * 359.97438 * 19 18 17 33 33 H 1.08007 * 119.00071 * 179.97438 * 20 19 18 34 34 H 0.96695 * 114.00063 * 269.99857 * 23 22 21 35 35 H 1.07995 * 120.34456 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3463 -0.0006 5 1 1.8825 2.3963 -1.2125 6 1 1.8825 2.3964 1.2125 7 6 2.0077 -1.2136 0.0005 8 1 3.0877 -1.2136 0.0010 9 6 1.3040 -2.4324 0.0016 10 7 -0.0332 -2.4311 0.0016 11 6 -0.7228 -3.5480 0.0021 12 6 -0.0924 -4.7878 0.0022 13 6 1.2892 -4.8553 0.0011 14 6 2.0145 -3.6605 0.0006 15 6 3.4912 -3.6761 -0.0011 16 6 4.1960 -2.9029 -0.9415 17 6 5.5540 -2.8961 -0.9592 18 6 6.2695 -3.6777 -0.0372 19 6 7.6758 -3.7074 -0.0204 20 6 8.3066 -4.4870 0.9012 21 7 7.6353 -5.2180 1.7810 22 6 6.3186 -5.2419 1.8275 23 8 5.6846 -6.0069 2.7481 24 6 5.5708 -4.4669 0.9131 25 6 4.1729 -4.4586 0.9224 26 1 -0.4849 0.8401 0.0004 27 1 -1.8019 -3.5034 0.0066 28 1 -0.6794 -5.6945 0.0030 29 1 1.7957 -5.8091 0.0007 30 1 3.6504 -2.3039 -1.6556 31 1 6.0827 -2.2943 -1.6837 32 1 8.2457 -3.1217 -0.7265 33 1 9.3863 -4.5114 0.9154 34 1 5.4927 -6.9057 2.4477 35 1 3.6286 -5.0547 1.6398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244312259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:12 Heat of formation + Delta-G solvation = 44.069676 kcal Electronic energy + Delta-G solvation = -21912.834176 eV Core-core repulsion = 18647.639134 eV Total energy + Delta-G solvation = -3265.195042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62932 -38.58507 -37.37260 -36.44019 -33.86299 -32.52437 -31.27139 -30.60010 -29.88042 -28.19429 -25.89104 -23.95520 -23.30030 -22.09853 -21.27330 -20.82463 -18.71867 -17.69310 -17.08885 -16.92193 -16.01641 -15.58548 -15.07821 -14.72568 -14.41984 -14.29775 -13.79034 -13.46299 -13.27937 -13.19509 -12.68882 -12.25969 -12.05829 -11.71211 -11.63478 -11.45493 -11.33333 -11.29206 -11.16060 -10.71094 -10.50072 -10.05803 -9.69970 -9.57517 -9.24758 -8.78122 -8.28438 -7.92675 -7.76069 -7.28341 -6.61280 -4.71007 0.58634 1.20280 2.15251 2.56668 2.79933 2.98641 3.02850 3.08932 3.38928 3.76571 3.79318 4.35382 4.56370 4.82799 4.93481 5.10516 5.25436 5.45071 5.55312 5.62171 5.73057 5.81376 5.95233 6.02318 6.08983 6.14640 6.36031 6.39565 6.47232 6.66743 6.73328 6.77905 6.92642 7.03301 7.13259 7.27024 7.44797 7.57768 7.62200 7.84943 8.04277 8.11392 8.43339 8.71671 9.89930 10.08486 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.005643 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.844530 B = 4960.644750 C = 6274.502668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.417 4.417 8 H 0.093 0.907 9 C 0.269 3.731 10 N -0.481 5.481 11 C 0.136 3.864 12 C -0.320 4.320 13 C -0.027 4.027 14 C -0.248 4.248 15 C 0.038 3.962 16 C -0.068 4.068 17 C -0.128 4.128 18 C -0.032 4.032 19 C -0.158 4.158 20 C 0.075 3.925 21 N -0.515 5.515 22 C 0.340 3.660 23 O -0.476 6.476 24 C -0.105 4.105 25 C -0.114 4.114 26 H 0.276 0.724 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.398 0.602 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -4.898 -1.979 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.160 4.160 3 Si 0.727 3.273 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.447 4.447 8 H 0.111 0.889 9 C 0.146 3.854 10 N -0.192 5.192 11 C -0.033 4.033 12 C -0.343 4.343 13 C -0.052 4.052 14 C -0.253 4.253 15 C 0.037 3.963 16 C -0.087 4.087 17 C -0.146 4.146 18 C -0.037 4.037 19 C -0.178 4.178 20 C -0.068 4.068 21 N -0.235 5.235 22 C 0.148 3.852 23 O -0.283 6.283 24 C -0.109 4.109 25 C -0.134 4.134 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.256 0.744 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.699 -3.872 -1.072 9.582 hybrid contribution 0.181 -0.065 -0.721 0.746 sum 8.880 -3.937 -1.792 9.877 Atomic orbital electron populations 1.70119 1.07325 1.28225 1.26596 1.26162 0.94934 1.01375 0.93526 0.86305 0.81118 0.80958 0.78915 1.18026 1.19507 1.19519 1.19842 0.94893 0.89333 1.40601 0.88877 1.18518 0.88017 0.90828 0.88052 1.68778 1.06992 1.26626 1.16799 1.22654 0.98931 0.88823 0.92872 1.21238 0.94559 0.97964 1.20500 1.20898 0.93809 0.95595 0.94860 1.19314 0.90385 0.94690 1.20908 1.18824 0.93222 0.92309 0.91901 1.21381 0.93550 0.96360 0.97378 1.20796 0.94356 1.00224 0.99271 1.18049 0.93141 0.96659 0.95805 1.21819 0.93794 1.01076 1.01106 1.21698 0.99413 0.94154 0.91523 1.66866 1.09375 1.23425 1.23806 1.19320 0.86715 0.92086 0.87051 1.84698 1.76386 1.27954 1.39254 1.18844 0.94990 1.00443 0.96574 1.21243 0.91403 1.01490 0.99225 0.91257 0.86198 0.88494 0.88432 0.84619 0.85497 0.84780 0.83327 0.74410 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.66 11.46 55.56 0.64 -17.03 16 2 C 0.07 1.61 5.50 -17.32 -0.10 1.52 16 3 Si 0.90 17.68 29.56 -169.99 -5.02 12.66 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.42 -10.36 7.94 -37.93 -0.30 -10.66 16 8 H 0.09 2.19 5.25 -52.49 -0.28 1.91 16 9 C 0.27 6.85 6.55 -84.71 -0.56 6.30 16 10 N -0.48 -12.54 7.85 -10.90 -0.09 -12.62 16 11 C 0.14 3.12 11.17 -17.48 -0.20 2.92 16 12 C -0.32 -6.70 10.10 -39.24 -0.40 -7.10 16 13 C -0.03 -0.57 9.64 -38.98 -0.38 -0.95 16 14 C -0.25 -5.62 5.51 -104.08 -0.57 -6.20 16 15 C 0.04 0.77 5.02 -104.87 -0.53 0.24 16 16 C -0.07 -1.24 7.44 -39.53 -0.29 -1.54 16 17 C -0.13 -2.04 9.77 -39.61 -0.39 -2.42 16 18 C -0.03 -0.51 5.75 -106.73 -0.61 -1.13 16 19 C -0.16 -2.12 9.86 -39.40 -0.39 -2.51 16 20 C 0.08 1.03 11.06 -17.94 -0.20 0.83 16 21 N -0.52 -8.28 10.33 -13.18 -0.14 -8.42 16 22 C 0.34 5.58 7.82 -16.42 -0.13 5.45 16 23 O -0.48 -6.88 12.84 -18.04 -0.23 -7.11 16 24 C -0.11 -1.82 5.75 -106.75 -0.61 -2.43 16 25 C -0.11 -2.09 9.10 -38.74 -0.35 -2.44 16 26 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 27 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 28 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.14 2.52 7.23 -52.49 -0.38 2.14 16 31 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.40 3.62 9.06 45.56 0.41 4.03 16 35 H 0.13 2.28 7.64 -52.49 -0.40 1.88 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -29.85 307.17 -8.52 -38.37 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -2.31 Total: 9.63 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -6.00 Total: -20.12 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.41 Total: -38.06 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.23 Total: -7.11 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.02 Total: 12.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.85 -8.52 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244312259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.444 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds