Wall clock time and date at job start Tue Mar 31 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86796 * 120.00371 * 2 1 4 4 H 1.48497 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46738 * 300.00104 * 3 2 1 6 6 H 1.48504 * 109.47112 * 59.99746 * 3 2 1 7 7 C 1.40130 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.40740 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.33715 * 119.94730 * 0.02562 * 9 7 2 11 11 C 1.31264 * 121.63632 * 179.97438 * 10 9 7 12 12 C 1.39086 * 121.35955 * 359.97438 * 11 10 9 13 13 C 1.38324 * 119.74239 * 359.97438 * 12 11 10 14 14 C 1.39775 * 118.46950 * 0.02562 * 13 12 11 15 15 C 1.47671 * 120.65881 * 180.02562 * 14 13 12 16 16 C 1.40673 * 119.73476 * 129.70280 * 15 14 13 17 17 C 1.35816 * 120.83024 * 179.70837 * 16 15 14 18 18 C 1.40464 * 119.86215 * 0.56226 * 17 16 15 19 19 C 1.40670 * 121.92165 * 179.74114 * 18 17 16 20 20 C 1.36205 * 118.89345 * 179.97438 * 19 18 17 21 21 N 1.32625 * 121.99845 * 0.02860 * 20 19 18 22 22 C 1.31778 * 122.62497 * 359.94939 * 21 20 19 23 23 O 1.35449 * 120.12659 * 180.02562 * 22 21 20 24 24 C 1.41276 * 119.74414 * 0.04483 * 22 21 20 25 25 C 1.38925 * 119.72614 * 309.97598 * 15 14 13 26 26 H 0.96998 * 119.99688 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.32474 * 179.72646 * 11 10 9 28 28 H 1.08008 * 120.13107 * 179.97438 * 12 11 10 29 29 H 1.07999 * 120.76582 * 180.02562 * 13 12 11 30 30 H 1.07999 * 119.58292 * 359.97438 * 16 15 14 31 31 H 1.08003 * 120.06656 * 180.28415 * 17 16 15 32 32 H 1.08003 * 120.55060 * 359.97438 * 19 18 17 33 33 H 1.08007 * 119.00071 * 179.97438 * 20 19 18 34 34 H 0.96695 * 114.00063 * 269.99857 * 23 22 21 35 35 H 1.07995 * 120.34456 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3463 -0.0006 5 1 1.8825 2.3963 -1.2125 6 1 1.8825 2.3964 1.2125 7 6 2.0077 -1.2136 0.0005 8 1 3.0877 -1.2136 0.0010 9 6 1.3040 -2.4324 0.0016 10 7 -0.0332 -2.4311 0.0016 11 6 -0.7228 -3.5480 0.0021 12 6 -0.0924 -4.7878 0.0022 13 6 1.2892 -4.8553 0.0011 14 6 2.0145 -3.6605 0.0006 15 6 3.4912 -3.6761 -0.0011 16 6 4.1960 -2.9029 -0.9415 17 6 5.5540 -2.8961 -0.9592 18 6 6.2695 -3.6777 -0.0372 19 6 7.6758 -3.7074 -0.0204 20 6 8.3066 -4.4870 0.9012 21 7 7.6353 -5.2180 1.7810 22 6 6.3186 -5.2419 1.8275 23 8 5.6846 -6.0069 2.7481 24 6 5.5708 -4.4669 0.9131 25 6 4.1729 -4.4586 0.9224 26 1 -0.4849 0.8401 0.0004 27 1 -1.8019 -3.5034 0.0066 28 1 -0.6794 -5.6945 0.0030 29 1 1.7957 -5.8091 0.0007 30 1 3.6504 -2.3039 -1.6556 31 1 6.0827 -2.2943 -1.6837 32 1 8.2457 -3.1217 -0.7265 33 1 9.3863 -4.5114 0.9154 34 1 5.4927 -6.9057 2.4477 35 1 3.6286 -5.0547 1.6398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244312259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:12 Heat of formation + Delta-G solvation = 24.312963 kcal Electronic energy + Delta-G solvation = -21913.690891 eV Core-core repulsion = 18647.639134 eV Total energy + Delta-G solvation = -3266.051757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85466 -40.21342 -38.64012 -37.68285 -35.60508 -33.94472 -32.60950 -32.25784 -31.28248 -29.61194 -27.60386 -25.30876 -24.63404 -23.54640 -22.81193 -22.34725 -19.89684 -19.42856 -18.44589 -18.17639 -17.41715 -17.05825 -16.34823 -16.21332 -15.98295 -15.84064 -15.03117 -14.79126 -14.68266 -14.40814 -14.23126 -13.96871 -13.58603 -13.13165 -12.96284 -12.89977 -12.82342 -12.74842 -12.59844 -12.20246 -12.01569 -11.65221 -11.28914 -10.96030 -10.43370 -10.30553 -9.89174 -9.53021 -9.46434 -8.68984 -8.34494 -6.51369 -0.62802 -0.09912 0.75511 0.98930 1.17196 1.37921 1.50473 1.52250 2.13780 2.17975 2.64368 2.80787 3.08996 3.67743 3.76042 3.89425 3.91462 3.99261 4.22148 4.29893 4.32026 4.45056 4.52929 4.56319 4.76870 4.87425 4.90574 4.94508 5.06553 5.12919 5.20437 5.40087 5.53391 5.56105 5.63545 5.72334 5.89974 5.98973 6.13430 6.27263 6.62998 6.67855 6.93348 6.98194 8.13940 8.37595 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.005643 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.844530 B = 4960.644750 C = 6274.502668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.025 3.975 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.269 1.269 7 C -0.447 4.447 8 H 0.098 0.902 9 C 0.237 3.763 10 N -0.521 5.521 11 C 0.111 3.889 12 C -0.312 4.312 13 C -0.039 4.039 14 C -0.250 4.250 15 C 0.010 3.990 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.041 4.041 19 C -0.149 4.149 20 C 0.076 3.924 21 N -0.529 5.529 22 C 0.333 3.667 23 O -0.486 6.486 24 C -0.123 4.123 25 C -0.110 4.110 26 H 0.280 0.720 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.188 0.812 34 H 0.419 0.581 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 -5.297 -2.311 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.174 1.174 5 H -0.186 1.186 6 H -0.194 1.194 7 C -0.477 4.477 8 H 0.116 0.884 9 C 0.114 3.886 10 N -0.233 5.233 11 C -0.055 4.055 12 C -0.334 4.334 13 C -0.063 4.063 14 C -0.254 4.254 15 C 0.009 3.991 16 C -0.107 4.107 17 C -0.130 4.130 18 C -0.046 4.046 19 C -0.168 4.168 20 C -0.067 4.067 21 N -0.249 5.249 22 C 0.141 3.859 23 O -0.296 6.296 24 C -0.126 4.126 25 C -0.130 4.130 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.180 0.820 32 H 0.192 0.808 33 H 0.205 0.795 34 H 0.280 0.720 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.847 -4.326 -1.407 12.690 hybrid contribution -0.631 -0.173 -0.577 0.873 sum 11.215 -4.499 -1.984 12.246 Atomic orbital electron populations 1.70215 1.08889 1.29246 1.28460 1.27012 0.95635 1.04514 0.92613 0.85255 0.79827 0.76460 0.78986 1.17407 1.18585 1.19443 1.20082 0.95244 0.90006 1.42370 0.88428 1.18962 0.88358 0.92381 0.88931 1.68707 1.07817 1.28379 1.18388 1.23068 0.99937 0.89150 0.93373 1.21575 0.94986 0.98416 1.18451 1.21276 0.94073 0.96397 0.94547 1.19644 0.92195 0.94366 1.19243 1.18798 0.92030 0.94432 0.93835 1.21295 0.94745 0.97023 0.97609 1.21123 0.93297 0.99377 0.99153 1.18412 0.94737 0.96205 0.95265 1.22209 0.92451 1.00722 1.01420 1.22413 1.01176 0.92758 0.90357 1.66984 1.09064 1.24138 1.24685 1.19375 0.86992 0.92414 0.87089 1.84641 1.76318 1.29424 1.39214 1.19008 0.94524 1.01440 0.97672 1.21210 0.92223 1.00889 0.98677 0.90877 0.84446 0.85352 0.85649 0.85873 0.81957 0.80783 0.79537 0.72003 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.26 11.46 21.86 0.25 -39.01 16 2 C 0.03 1.25 5.50 85.32 0.47 1.72 16 3 Si 0.97 36.98 29.56 68.60 2.03 39.01 16 4 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.45 -23.12 7.94 23.34 0.19 -22.94 16 8 H 0.10 4.75 5.25 -2.91 -0.02 4.74 16 9 C 0.24 12.64 6.55 40.37 0.26 12.91 16 10 N -0.52 -28.42 7.85 -188.41 -1.48 -29.90 16 11 C 0.11 5.24 11.17 84.98 0.95 6.19 16 12 C -0.31 -13.03 10.10 22.49 0.23 -12.81 16 13 C -0.04 -1.63 9.64 22.66 0.22 -1.41 16 14 C -0.25 -11.65 5.51 -19.51 -0.11 -11.76 16 15 C 0.01 0.40 5.02 -20.03 -0.10 0.30 16 16 C -0.09 -3.21 7.44 22.30 0.17 -3.05 16 17 C -0.11 -3.29 9.77 22.25 0.22 -3.08 16 18 C -0.04 -1.22 5.75 -21.23 -0.12 -1.34 16 19 C -0.15 -3.31 9.86 22.39 0.22 -3.09 16 20 C 0.08 1.74 11.06 84.10 0.93 2.67 16 21 N -0.53 -15.42 10.33 -308.83 -3.19 -18.61 16 22 C 0.33 10.31 7.82 85.45 0.67 10.97 16 23 O -0.49 -13.40 12.84 -87.46 -1.12 -14.52 16 24 C -0.12 -4.08 5.75 -21.24 -0.12 -4.20 16 25 C -0.11 -4.03 9.10 22.81 0.21 -3.82 16 26 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 27 H 0.14 5.69 8.06 -2.91 -0.02 5.67 16 28 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.12 4.74 7.23 -2.91 -0.02 4.72 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.42 7.04 9.06 -74.06 -0.67 6.37 16 35 H 0.13 4.54 7.64 -2.91 -0.02 4.52 16 Total: -1.00 -67.42 307.17 1.24 -66.18 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.48 Total: 29.59 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.27 Total: -32.73 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -4.42 Total: -87.52 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.12 Total: -14.52 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -67.42 1.24 -66.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244312259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.494 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds