Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48503 * 109.47168 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47259 * 119.99450 * 3 2 1 6 6 H 1.48502 * 109.47014 * 239.99931 * 3 2 1 7 7 C 1.40006 * 119.99389 * 179.71746 * 2 1 3 8 8 H 1.08001 * 119.99479 * 159.46248 * 7 2 1 9 9 C 1.41365 * 120.00591 * 339.47135 * 7 2 1 10 10 C 1.40748 * 119.76423 * 152.16852 * 9 7 2 11 11 C 1.38268 * 119.20463 * 179.72622 * 10 9 7 12 12 C 1.38717 * 118.69803 * 0.53590 * 11 10 9 13 13 C 1.39966 * 119.45479 * 359.72051 * 12 11 10 14 14 C 1.48059 * 119.61624 * 180.02562 * 13 12 11 15 15 C 1.38524 * 120.36462 * 312.32702 * 14 13 12 16 16 C 1.38948 * 120.54578 * 179.71893 * 15 14 13 17 17 C 1.36261 * 121.19182 * 0.58302 * 16 15 14 18 18 C 1.40568 * 120.17840 * 359.69739 * 17 16 15 19 19 N 1.33821 * 120.88582 * 179.97438 * 18 17 16 20 20 C 1.31542 * 121.27322 * 180.02562 * 19 18 17 21 21 O 1.35579 * 119.22046 * 180.02562 * 20 19 18 22 22 C 1.40006 * 121.55769 * 359.97438 * 20 19 18 23 23 C 1.36414 * 119.84576 * 359.97438 * 22 20 19 24 24 C 1.40653 * 118.27348 * 0.03396 * 23 22 20 25 25 N 1.32345 * 120.77010 * 0.02562 * 13 12 11 26 26 H 0.96995 * 120.00317 * 173.36287 * 1 2 3 27 27 H 1.07999 * 120.39681 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.65085 * 180.25493 * 11 10 9 29 29 H 1.08002 * 120.27017 * 179.70865 * 12 11 10 30 30 H 1.07999 * 119.72733 * 359.97438 * 15 14 13 31 31 H 1.07994 * 119.40375 * 180.29948 * 16 15 14 32 32 H 1.08001 * 119.90718 * 179.67872 * 17 16 15 33 33 H 0.96701 * 113.99633 * 89.99977 * 21 20 19 34 34 H 1.08005 * 120.07392 * 180.02562 * 22 20 19 35 35 H 1.07994 * 120.86258 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2766 2.7465 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0954 1.6963 -1.2125 7 6 2.0075 -1.2125 0.0060 8 1 3.0360 -1.2439 -0.3220 9 6 1.3680 -2.3958 0.4411 10 6 1.7846 -3.6416 -0.0642 11 6 1.1549 -4.7920 0.3736 12 6 0.1216 -4.6775 1.2919 13 6 -0.2514 -3.4099 1.7537 14 6 -1.3535 -3.2835 2.7343 15 6 -2.5496 -3.9529 2.5336 16 6 -3.5842 -3.8416 3.4544 17 6 -3.4576 -3.0667 4.5680 18 6 -2.2634 -2.3652 4.8087 19 7 -2.1238 -1.5998 5.8975 20 6 -1.0100 -0.9397 6.1299 21 8 -0.9136 -0.1768 7.2465 22 6 0.0786 -1.0073 5.2522 23 6 -0.0041 -1.7723 4.1257 24 6 -1.1982 -2.4750 3.8837 25 7 0.3695 -2.3230 1.3241 26 1 -0.4850 -0.8343 -0.0971 27 1 2.5893 -3.6985 -0.7824 28 1 1.4585 -5.7605 0.0044 29 1 -0.3911 -5.5591 1.6475 30 1 -2.6775 -4.5696 1.6563 31 1 -4.5071 -4.3753 3.2820 32 1 -4.2770 -2.9910 5.2675 33 1 -0.5680 -0.6486 8.0166 34 1 0.9820 -0.4557 5.4668 35 1 0.8258 -1.8366 3.4376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244315454.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = 35.702445 kcal Electronic energy + Delta-G solvation = -22120.833363 eV Core-core repulsion = 18855.275490 eV Total energy + Delta-G solvation = -3265.557872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66734 -38.76085 -37.81601 -35.61764 -34.09958 -33.27476 -31.10716 -30.55481 -29.54790 -28.63516 -25.52755 -23.93706 -23.27112 -22.80579 -21.49899 -20.31430 -18.88779 -18.22069 -17.37359 -16.88734 -15.99003 -15.26653 -15.05875 -14.56124 -14.50037 -14.31874 -14.01468 -13.60896 -13.25592 -13.14018 -12.86836 -12.45209 -12.00077 -11.88584 -11.68385 -11.35535 -11.21447 -11.18275 -11.02982 -10.80297 -10.42351 -10.21809 -9.88446 -9.25876 -9.16537 -8.70550 -8.42070 -8.24838 -8.04279 -7.47436 -7.14735 -4.70358 0.60371 1.04659 2.04062 2.57751 2.66511 3.10171 3.14217 3.21236 3.34441 3.75190 4.00500 4.32045 4.54007 4.78854 4.84338 5.12962 5.22513 5.25305 5.37860 5.40435 5.60663 5.64483 5.85078 6.08303 6.14012 6.21714 6.25949 6.31205 6.46618 6.49170 6.59262 6.69828 6.86764 6.91958 7.05441 7.26616 7.39468 7.59418 7.61636 7.71608 7.89619 8.09549 8.50052 8.65511 9.54737 10.08615 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.006624 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.412725 B = 4226.090538 C = 5654.028262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.042 3.958 3 Si 1.065 2.935 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.251 3.749 10 C -0.259 4.259 11 C -0.053 4.053 12 C -0.291 4.291 13 C 0.179 3.821 14 C 0.025 3.975 15 C -0.121 4.121 16 C -0.088 4.088 17 C -0.112 4.112 18 C 0.150 3.850 19 N -0.507 5.507 20 C 0.340 3.660 21 O -0.485 6.485 22 C -0.205 4.205 23 C -0.004 4.004 24 C -0.092 4.092 25 N -0.530 5.530 26 H 0.302 0.698 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.398 0.602 34 H 0.139 0.861 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -4.712 7.325 8.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.185 4.185 3 Si 0.888 3.112 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.528 4.528 8 H 0.101 0.899 9 C 0.127 3.873 10 C -0.282 4.282 11 C -0.077 4.077 12 C -0.315 4.315 13 C 0.037 3.963 14 C 0.023 3.977 15 C -0.140 4.140 16 C -0.108 4.108 17 C -0.131 4.131 18 C 0.030 3.970 19 N -0.227 5.227 20 C 0.147 3.853 21 O -0.291 6.291 22 C -0.226 4.226 23 C -0.029 4.029 24 C -0.095 4.095 25 N -0.245 5.245 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.157 0.843 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.080 -1.760 7.858 8.622 hybrid contribution 1.320 -2.937 -0.669 3.289 sum -1.760 -4.698 7.189 8.766 Atomic orbital electron populations 1.70251 1.08185 1.34829 1.24924 1.26928 0.95751 1.03876 0.91922 0.83640 0.75637 0.74030 0.77859 1.19764 1.19980 1.20176 1.20456 1.00586 0.92796 1.38954 0.89902 1.18544 0.88135 0.92562 0.88084 1.21911 1.06298 0.93757 1.06256 1.20897 0.94649 0.97146 0.95040 1.21135 1.05646 0.96200 1.08527 1.19447 0.93066 0.90250 0.93573 1.18807 0.93304 0.93541 0.92002 1.21184 0.92357 1.00520 0.99906 1.20736 0.98676 0.97891 0.93499 1.20660 0.96098 0.97824 0.98530 1.18414 0.93911 0.94962 0.89757 1.67441 1.24828 1.08847 1.21577 1.19321 0.88629 0.88963 0.88399 1.84742 1.87579 1.36728 1.20089 1.21822 1.00002 1.03570 0.97233 1.21815 0.97483 0.89778 0.93851 1.18779 0.95250 0.99544 0.95926 1.68449 1.12357 1.28996 1.14741 0.88375 0.87790 0.87936 0.87967 0.85319 0.85327 0.85099 0.74533 0.84292 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.58 13.12 55.55 0.73 -19.85 16 2 C 0.04 1.06 5.28 -17.35 -0.09 0.96 16 3 Si 1.06 21.42 29.98 -169.99 -5.10 16.33 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.50 -12.70 9.05 -37.73 -0.34 -13.04 16 8 H 0.08 2.01 7.93 -52.49 -0.42 1.59 16 9 C 0.25 6.40 5.94 -85.01 -0.50 5.89 16 10 C -0.26 -5.96 9.83 -38.62 -0.38 -6.34 16 11 C -0.05 -1.10 10.15 -39.39 -0.40 -1.50 16 12 C -0.29 -6.03 9.49 -38.76 -0.37 -6.40 16 13 C 0.18 4.01 5.80 -82.97 -0.48 3.53 16 14 C 0.03 0.50 5.64 -104.57 -0.59 -0.09 16 15 C -0.12 -2.01 9.41 -39.21 -0.37 -2.38 16 16 C -0.09 -1.26 9.92 -40.03 -0.40 -1.65 16 17 C -0.11 -1.75 9.96 -39.42 -0.39 -2.14 16 18 C 0.15 2.79 6.60 -84.88 -0.56 2.23 16 19 N -0.51 -9.32 10.37 -11.07 -0.11 -9.44 16 20 C 0.34 5.79 7.72 -17.01 -0.13 5.66 16 21 O -0.48 -6.77 13.55 -18.43 -0.25 -7.02 16 22 C -0.21 -3.55 9.96 -39.58 -0.39 -3.94 16 23 C 0.00 -0.08 9.19 -39.33 -0.36 -0.44 16 24 C -0.09 -1.85 5.76 -106.55 -0.61 -2.47 16 25 N -0.53 -13.26 6.11 -7.71 -0.05 -13.31 16 26 H 0.30 8.51 6.83 -40.82 -0.28 8.24 16 27 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.85 7.99 -52.49 -0.42 1.43 16 30 H 0.13 1.94 7.97 -52.49 -0.42 1.52 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.40 3.25 9.06 45.56 0.41 3.66 16 34 H 0.14 2.06 8.06 -52.48 -0.42 1.63 16 35 H 0.16 3.44 6.06 -52.49 -0.32 3.12 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -30.16 310.25 -8.83 -38.98 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -2.35 Total: 11.75 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -6.37 Total: -22.11 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.57 Total: -42.60 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.25 Total: -7.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.10 Total: 16.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.16 -8.83 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244315454.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.686 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds