Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48503 * 109.47168 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47259 * 119.99450 * 3 2 1 6 6 H 1.48502 * 109.47014 * 239.99931 * 3 2 1 7 7 C 1.40006 * 119.99389 * 179.71746 * 2 1 3 8 8 H 1.08001 * 119.99479 * 159.46248 * 7 2 1 9 9 C 1.41365 * 120.00591 * 339.47135 * 7 2 1 10 10 C 1.40748 * 119.76423 * 152.16852 * 9 7 2 11 11 C 1.38268 * 119.20463 * 179.72622 * 10 9 7 12 12 C 1.38717 * 118.69803 * 0.53590 * 11 10 9 13 13 C 1.39966 * 119.45479 * 359.72051 * 12 11 10 14 14 C 1.48059 * 119.61624 * 180.02562 * 13 12 11 15 15 C 1.38524 * 120.36462 * 312.32702 * 14 13 12 16 16 C 1.38948 * 120.54578 * 179.71893 * 15 14 13 17 17 C 1.36261 * 121.19182 * 0.58302 * 16 15 14 18 18 C 1.40568 * 120.17840 * 359.69739 * 17 16 15 19 19 N 1.33821 * 120.88582 * 179.97438 * 18 17 16 20 20 C 1.31542 * 121.27322 * 180.02562 * 19 18 17 21 21 O 1.35579 * 119.22046 * 180.02562 * 20 19 18 22 22 C 1.40006 * 121.55769 * 359.97438 * 20 19 18 23 23 C 1.36414 * 119.84576 * 359.97438 * 22 20 19 24 24 C 1.40653 * 118.27348 * 0.03396 * 23 22 20 25 25 N 1.32345 * 120.77010 * 0.02562 * 13 12 11 26 26 H 0.96995 * 120.00317 * 173.36287 * 1 2 3 27 27 H 1.07999 * 120.39681 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.65085 * 180.25493 * 11 10 9 29 29 H 1.08002 * 120.27017 * 179.70865 * 12 11 10 30 30 H 1.07999 * 119.72733 * 359.97438 * 15 14 13 31 31 H 1.07994 * 119.40375 * 180.29948 * 16 15 14 32 32 H 1.08001 * 119.90718 * 179.67872 * 17 16 15 33 33 H 0.96701 * 113.99633 * 89.99977 * 21 20 19 34 34 H 1.08005 * 120.07392 * 180.02562 * 22 20 19 35 35 H 1.07994 * 120.86258 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2766 2.7465 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0954 1.6963 -1.2125 7 6 2.0075 -1.2125 0.0060 8 1 3.0360 -1.2439 -0.3220 9 6 1.3680 -2.3958 0.4411 10 6 1.7846 -3.6416 -0.0642 11 6 1.1549 -4.7920 0.3736 12 6 0.1216 -4.6775 1.2919 13 6 -0.2514 -3.4099 1.7537 14 6 -1.3535 -3.2835 2.7343 15 6 -2.5496 -3.9529 2.5336 16 6 -3.5842 -3.8416 3.4544 17 6 -3.4576 -3.0667 4.5680 18 6 -2.2634 -2.3652 4.8087 19 7 -2.1238 -1.5998 5.8975 20 6 -1.0100 -0.9397 6.1299 21 8 -0.9136 -0.1768 7.2465 22 6 0.0786 -1.0073 5.2522 23 6 -0.0041 -1.7723 4.1257 24 6 -1.1982 -2.4750 3.8837 25 7 0.3695 -2.3230 1.3241 26 1 -0.4850 -0.8343 -0.0971 27 1 2.5893 -3.6985 -0.7824 28 1 1.4585 -5.7605 0.0044 29 1 -0.3911 -5.5591 1.6475 30 1 -2.6775 -4.5696 1.6563 31 1 -4.5071 -4.3753 3.2820 32 1 -4.2770 -2.9910 5.2675 33 1 -0.5680 -0.6486 8.0166 34 1 0.9820 -0.4557 5.4668 35 1 0.8258 -1.8366 3.4376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244315454.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = 15.488102 kcal Electronic energy + Delta-G solvation = -22121.709922 eV Core-core repulsion = 18855.275490 eV Total energy + Delta-G solvation = -3266.434432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.02423 -40.39174 -39.14641 -36.89140 -35.82137 -34.76987 -32.70500 -32.25084 -30.87895 -30.18001 -27.32139 -25.33056 -24.62124 -24.33907 -23.25946 -21.83296 -20.18575 -19.88439 -18.76744 -18.24736 -17.32928 -16.82256 -16.74672 -16.19426 -15.83380 -15.73785 -15.56948 -15.04667 -14.78225 -14.62371 -14.31612 -14.05952 -13.63573 -13.48942 -13.00084 -12.80903 -12.73568 -12.49202 -12.44034 -12.34158 -12.00577 -11.69505 -11.56356 -10.97791 -10.64601 -10.42225 -9.96722 -9.83544 -9.68994 -9.07052 -8.94295 -6.62730 -0.76449 -0.27766 0.47087 0.85788 1.11023 1.49421 1.60574 1.76987 1.81503 2.34014 2.52798 2.71011 2.98032 3.34646 3.55100 3.58799 3.80360 3.87834 3.91282 4.14923 4.22190 4.36392 4.40694 4.56784 4.68853 4.70037 4.82357 4.87684 4.93762 5.01888 5.15637 5.34363 5.42515 5.43911 5.54934 5.64633 5.74900 5.81107 5.83535 6.07247 6.55367 6.65460 6.78238 6.80503 7.77543 8.12455 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.006624 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.412725 B = 4226.090538 C = 5654.028262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.010 3.990 3 Si 1.113 2.887 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.537 4.537 8 H 0.084 0.916 9 C 0.227 3.773 10 C -0.281 4.281 11 C -0.049 4.049 12 C -0.281 4.281 13 C 0.165 3.835 14 C -0.018 4.018 15 C -0.107 4.107 16 C -0.075 4.075 17 C -0.107 4.107 18 C 0.131 3.869 19 N -0.515 5.515 20 C 0.343 3.657 21 O -0.484 6.484 22 C -0.199 4.199 23 C -0.032 4.032 24 C -0.111 4.111 25 N -0.552 5.552 26 H 0.282 0.718 27 H 0.112 0.888 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.178 0.822 32 H 0.159 0.841 33 H 0.423 0.577 34 H 0.158 0.842 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 -6.051 8.507 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.210 4.210 3 Si 0.930 3.070 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.568 4.568 8 H 0.102 0.898 9 C 0.102 3.898 10 C -0.303 4.303 11 C -0.073 4.073 12 C -0.304 4.304 13 C 0.023 3.977 14 C -0.020 4.020 15 C -0.126 4.126 16 C -0.095 4.095 17 C -0.125 4.125 18 C 0.011 3.989 19 N -0.235 5.235 20 C 0.149 3.851 21 O -0.294 6.294 22 C -0.220 4.220 23 C -0.058 4.058 24 C -0.114 4.114 25 N -0.267 5.267 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.161 0.839 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.196 0.804 32 H 0.176 0.824 33 H 0.285 0.715 34 H 0.176 0.824 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.382 -3.142 9.064 10.547 hybrid contribution 1.639 -2.748 -0.888 3.321 sum -2.743 -5.891 8.175 10.443 Atomic orbital electron populations 1.70378 1.09144 1.33378 1.29006 1.28271 0.95660 1.07058 0.90025 0.83076 0.74756 0.69946 0.79192 1.20281 1.18968 1.17543 1.20644 1.00972 0.93815 1.41398 0.89792 1.18929 0.88769 0.93704 0.88428 1.22109 1.07197 0.93978 1.07022 1.21340 0.93697 0.98095 0.94160 1.21607 1.04858 0.96732 1.07167 1.19996 0.93537 0.90344 0.93781 1.18895 0.94332 0.96421 0.92321 1.21536 0.91464 0.98966 1.00612 1.21195 0.99472 0.96971 0.91832 1.21080 0.95507 0.96646 0.99304 1.18811 0.94656 0.95794 0.89687 1.67529 1.25226 1.09199 1.21568 1.19359 0.88122 0.88511 0.89102 1.84692 1.87711 1.36719 1.20284 1.22011 1.01032 1.02635 0.96301 1.21653 0.97332 0.92028 0.94760 1.18936 0.95731 0.99993 0.96709 1.68437 1.12582 1.30766 1.14911 0.90565 0.87009 0.83895 0.84731 0.83594 0.80438 0.82351 0.71483 0.82397 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.49 13.12 21.83 0.29 -45.20 16 2 C 0.01 0.50 5.28 85.28 0.45 0.95 16 3 Si 1.11 44.47 29.98 68.60 2.06 46.53 16 4 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.54 -28.87 9.05 23.47 0.21 -28.65 16 8 H 0.08 4.28 7.93 -2.91 -0.02 4.26 16 9 C 0.23 12.11 5.94 40.27 0.24 12.35 16 10 C -0.28 -13.13 9.83 22.89 0.23 -12.90 16 11 C -0.05 -1.96 10.15 22.39 0.23 -1.73 16 12 C -0.28 -11.26 9.49 22.80 0.22 -11.05 16 13 C 0.17 7.51 5.80 42.09 0.24 7.75 16 14 C -0.02 -0.72 5.64 -19.83 -0.11 -0.83 16 15 C -0.11 -3.31 9.41 22.51 0.21 -3.10 16 16 C -0.08 -1.85 9.92 21.98 0.22 -1.63 16 17 C -0.11 -3.00 9.96 22.38 0.22 -2.78 16 18 C 0.13 4.73 6.60 40.21 0.27 4.99 16 19 N -0.51 -18.29 10.37 -302.21 -3.13 -21.42 16 20 C 0.34 11.38 7.72 85.16 0.66 12.04 16 21 O -0.48 -12.61 13.55 -88.87 -1.20 -13.81 16 22 C -0.20 -6.98 9.96 22.27 0.22 -6.76 16 23 C -0.03 -1.34 9.19 22.43 0.21 -1.13 16 24 C -0.11 -4.51 5.76 -21.11 -0.12 -4.64 16 25 N -0.55 -28.90 6.11 -178.30 -1.09 -29.99 16 26 H 0.28 16.94 6.83 -92.71 -0.63 16.30 16 27 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 28 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.13 4.46 7.99 -2.91 -0.02 4.43 16 30 H 0.15 3.93 7.97 -2.91 -0.02 3.90 16 31 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.42 5.91 9.06 -74.06 -0.67 5.24 16 34 H 0.16 4.71 8.06 -2.91 -0.02 4.68 16 35 H 0.13 6.03 6.06 -2.91 -0.02 6.01 16 Total: -1.00 -69.86 310.25 1.11 -68.75 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.61 Total: 32.26 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.58 Total: -37.12 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.94 Total: -96.61 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.20 Total: -13.81 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.06 Total: 46.53 kcal Total: -69.86 1.11 -68.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244315454.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.236 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds