Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86797 * 119.99743 * 2 1 4 4 H 1.48496 * 109.47379 * 240.00141 * 3 2 1 5 5 H 1.48508 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46847 * 120.00027 * 3 2 1 7 7 C 1.40047 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99479 * 163.17145 * 7 2 1 9 9 C 1.41519 * 119.99949 * 343.16645 * 7 2 1 10 10 C 1.41146 * 120.98839 * 336.09473 * 9 7 2 11 11 C 1.37751 * 119.08103 * 180.02562 * 10 9 7 12 12 N 1.31908 * 121.16750 * 359.73794 * 11 10 9 13 13 C 1.32835 * 122.19842 * 0.53789 * 12 11 10 14 14 C 1.48270 * 119.61415 * 179.74087 * 13 12 11 15 15 C 1.39498 * 119.98021 * 359.73065 * 14 13 12 16 16 C 1.37673 * 120.02019 * 179.97438 * 15 14 13 17 17 C 1.39692 * 119.98070 * 0.02562 * 16 15 14 18 18 C 1.47724 * 120.02147 * 180.02562 * 17 16 15 19 19 N 1.31269 * 125.73121 * 359.95342 * 18 17 16 20 20 C 1.34106 * 108.64721 * 180.02562 * 19 18 17 21 21 C 1.34591 * 107.84789 * 0.02562 * 20 19 18 22 22 O 1.34442 * 125.72687 * 179.97438 * 18 17 16 23 23 C 1.39686 * 119.95423 * 0.27130 * 17 16 15 24 24 C 1.37676 * 119.97745 * 359.40735 * 23 17 16 25 25 C 1.38956 * 120.76587 * 359.47025 * 13 12 11 26 26 H 0.96999 * 120.00543 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.45808 * 0.02562 * 10 9 7 28 28 H 1.08005 * 119.41520 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.99055 * 359.97438 * 15 14 13 30 30 H 1.08005 * 120.00613 * 180.02562 * 16 15 14 31 31 H 1.08006 * 126.08016 * 180.02562 * 20 19 18 32 32 H 1.08007 * 126.36105 * 179.97438 * 21 20 19 33 33 H 1.08003 * 120.01133 * 179.72518 * 23 17 16 34 34 H 1.07996 * 119.99184 * 180.31545 * 24 23 17 35 35 H 1.07995 * 120.62146 * 180.23774 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0530 -1.2327 -0.2714 9 6 1.3455 -2.4123 0.3538 10 6 0.1909 -2.3926 1.1656 11 6 -0.4220 -3.5836 1.4869 12 7 0.0483 -4.7343 1.0456 13 6 1.1337 -4.8098 0.2836 14 6 1.6155 -6.1346 -0.1759 15 6 0.9329 -7.2925 0.1972 16 6 1.3793 -8.5230 -0.2294 17 6 2.5165 -8.6119 -1.0358 18 6 2.9960 -9.9317 -1.4945 19 7 2.4432 -11.0885 -1.2127 20 6 3.1559 -12.0593 -1.8025 21 6 4.1746 -11.4794 -2.4639 22 8 4.0720 -10.1497 -2.2705 23 6 3.2030 -7.4523 -1.4037 24 6 2.7512 -6.2222 -0.9815 25 6 1.8194 -3.6613 -0.0926 26 1 -0.4851 0.8400 0.0004 27 1 -0.2063 -1.4567 1.5297 28 1 -1.3060 -3.5747 2.1074 29 1 0.0539 -7.2237 0.8210 30 1 0.8503 -9.4193 0.0593 31 1 2.9493 -13.1184 -1.7553 32 1 4.9332 -11.9857 -3.0426 33 1 4.0849 -7.5203 -2.0234 34 1 3.2788 -5.3252 -1.2701 35 1 2.6994 -3.7251 -0.7153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245619379.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = 71.140646 kcal Electronic energy + Delta-G solvation = -20794.850633 eV Core-core repulsion = 17530.829476 eV Total energy + Delta-G solvation = -3264.021157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.30700 -39.25109 -37.88251 -34.84188 -34.29669 -32.62749 -31.14834 -30.50153 -30.02220 -27.88421 -26.07235 -23.99319 -23.20068 -22.14107 -21.61128 -20.77490 -20.35007 -18.07873 -17.64831 -16.64816 -16.11243 -15.70799 -15.21914 -15.12662 -14.75753 -14.25816 -13.79175 -13.70017 -13.27395 -13.11130 -13.09728 -13.03357 -12.52464 -12.18835 -11.60514 -11.44732 -11.40210 -11.23698 -11.02929 -10.81945 -10.57453 -10.39395 -9.96504 -9.76837 -9.48625 -8.74457 -8.47798 -8.18019 -8.10599 -7.24977 -6.94657 -4.70318 0.63251 1.67643 1.71554 2.54778 2.61115 2.67217 2.95421 2.96957 2.99260 3.19896 3.77788 3.94951 4.11289 4.60241 4.80179 4.86450 5.01591 5.18042 5.21555 5.54748 5.56396 5.59301 5.70711 5.80157 5.95355 6.01885 6.15385 6.30194 6.54382 6.54628 6.61505 6.72902 6.78753 7.00228 7.05284 7.11367 7.25676 7.35133 7.64035 7.73503 7.97368 8.32933 8.61110 8.62818 9.43476 9.96866 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.002933 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.294210 B = 9543.646850 C =10301.141147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.124 3.876 10 C -0.206 4.206 11 C 0.088 3.912 12 N -0.560 5.560 13 C 0.141 3.859 14 C 0.017 3.983 15 C -0.098 4.098 16 C -0.072 4.072 17 C -0.048 4.048 18 C 0.252 3.748 19 N -0.484 5.484 20 C -0.039 4.039 21 C -0.087 4.087 22 O -0.198 6.198 23 C -0.087 4.087 24 C -0.116 4.116 25 C -0.245 4.245 26 H 0.285 0.715 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.184 0.816 32 H 0.215 0.785 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -12.862 -3.303 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.228 4.228 11 C -0.065 4.065 12 N -0.275 5.275 13 C 0.008 3.992 14 C 0.016 3.984 15 C -0.117 4.117 16 C -0.091 4.091 17 C -0.049 4.049 18 C 0.050 3.950 19 N -0.212 5.212 20 C -0.179 4.179 21 C -0.158 4.158 22 O -0.085 6.085 23 C -0.107 4.107 24 C -0.135 4.135 25 C -0.268 4.268 26 H 0.096 0.904 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.201 0.799 32 H 0.231 0.769 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.713 -13.525 -2.718 14.578 hybrid contribution 1.430 1.463 -0.835 2.210 sum 6.143 -12.062 -3.554 13.995 Atomic orbital electron populations 1.69745 1.07760 1.29904 1.33475 1.25984 0.94791 1.01650 0.91838 0.86272 0.80131 0.79667 0.80196 1.18782 1.20134 1.18609 1.19583 0.97920 0.90744 1.40290 0.89928 1.17770 0.90821 0.92022 0.87735 1.22304 1.00137 0.98247 1.02088 1.21973 0.98167 0.88374 0.97954 1.67258 1.14330 1.29352 1.16541 1.19087 0.93122 0.90504 0.96485 1.19091 0.93058 0.92692 0.93602 1.21288 1.00409 0.90361 0.99611 1.21065 0.94170 0.98452 0.95395 1.17268 0.98551 0.85637 1.03468 1.24075 0.84062 0.94945 0.91959 1.70675 1.29155 0.97724 1.23674 1.23364 0.94371 1.00506 0.99618 1.25080 1.04059 0.80076 1.06545 1.84519 1.42624 1.26430 1.54919 1.21021 0.99192 0.91204 0.99263 1.21215 0.96625 0.97445 0.98187 1.21909 1.04282 0.92876 1.07774 0.90359 0.85453 0.85820 0.83951 0.84829 0.79917 0.76880 0.85480 0.84609 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.09 10.92 55.55 0.61 -18.49 16 2 C 0.08 1.83 5.20 -17.34 -0.09 1.74 16 3 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.34 9.12 -37.65 -0.34 -11.68 16 8 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 9 C 0.12 3.16 5.60 -106.56 -0.60 2.56 16 10 C -0.21 -5.10 8.79 -38.66 -0.34 -5.44 16 11 C 0.09 2.03 11.15 -17.70 -0.20 1.83 16 12 N -0.56 -12.98 9.38 -9.95 -0.09 -13.08 16 13 C 0.14 3.17 6.72 -83.04 -0.56 2.61 16 14 C 0.02 0.32 5.88 -104.83 -0.62 -0.29 16 15 C -0.10 -1.69 9.55 -39.32 -0.38 -2.07 16 16 C -0.07 -1.11 9.67 -39.25 -0.38 -1.49 16 17 C -0.05 -0.73 5.88 -104.94 -0.62 -1.34 16 18 C 0.25 3.70 7.89 -13.92 -0.11 3.59 16 19 N -0.48 -6.97 10.90 -11.74 -0.13 -7.09 16 20 C -0.04 -0.42 11.87 -17.85 -0.21 -0.63 16 21 C -0.09 -0.83 12.17 29.44 0.36 -0.47 16 22 O -0.20 -2.57 10.51 4.07 0.04 -2.52 16 23 C -0.09 -1.28 9.70 -39.25 -0.38 -1.66 16 24 C -0.12 -1.91 9.39 -39.31 -0.37 -2.28 16 25 C -0.24 -5.73 9.25 -38.33 -0.35 -6.08 16 26 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 27 H 0.13 3.20 6.20 -52.49 -0.33 2.87 16 28 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 29 H 0.14 2.46 7.52 -52.49 -0.39 2.07 16 30 H 0.13 1.89 7.82 -52.48 -0.41 1.48 16 31 H 0.18 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.21 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.57 7.89 -52.48 -0.41 1.16 16 34 H 0.14 2.10 6.15 -52.49 -0.32 1.78 16 35 H 0.11 2.25 6.17 -52.49 -0.32 1.93 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -28.61 312.58 -8.08 -36.69 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.01 Total: 8.39 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -5.18 Total: -21.10 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.39 Total: -38.66 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.61 -8.08 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245619379.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.828 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds