Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86797 * 119.99743 * 2 1 4 4 H 1.48496 * 109.47379 * 240.00141 * 3 2 1 5 5 H 1.48508 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46847 * 120.00027 * 3 2 1 7 7 C 1.40047 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99479 * 163.17145 * 7 2 1 9 9 C 1.41519 * 119.99949 * 343.16645 * 7 2 1 10 10 C 1.41146 * 120.98839 * 336.09473 * 9 7 2 11 11 C 1.37751 * 119.08103 * 180.02562 * 10 9 7 12 12 N 1.31908 * 121.16750 * 359.73794 * 11 10 9 13 13 C 1.32835 * 122.19842 * 0.53789 * 12 11 10 14 14 C 1.48270 * 119.61415 * 179.74087 * 13 12 11 15 15 C 1.39498 * 119.98021 * 359.73065 * 14 13 12 16 16 C 1.37673 * 120.02019 * 179.97438 * 15 14 13 17 17 C 1.39692 * 119.98070 * 0.02562 * 16 15 14 18 18 C 1.47724 * 120.02147 * 180.02562 * 17 16 15 19 19 N 1.31269 * 125.73121 * 359.95342 * 18 17 16 20 20 C 1.34106 * 108.64721 * 180.02562 * 19 18 17 21 21 C 1.34591 * 107.84789 * 0.02562 * 20 19 18 22 22 O 1.34442 * 125.72687 * 179.97438 * 18 17 16 23 23 C 1.39686 * 119.95423 * 0.27130 * 17 16 15 24 24 C 1.37676 * 119.97745 * 359.40735 * 23 17 16 25 25 C 1.38956 * 120.76587 * 359.47025 * 13 12 11 26 26 H 0.96999 * 120.00543 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.45808 * 0.02562 * 10 9 7 28 28 H 1.08005 * 119.41520 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.99055 * 359.97438 * 15 14 13 30 30 H 1.08005 * 120.00613 * 180.02562 * 16 15 14 31 31 H 1.08006 * 126.08016 * 180.02562 * 20 19 18 32 32 H 1.08007 * 126.36105 * 179.97438 * 21 20 19 33 33 H 1.08003 * 120.01133 * 179.72518 * 23 17 16 34 34 H 1.07996 * 119.99184 * 180.31545 * 24 23 17 35 35 H 1.07995 * 120.62146 * 180.23774 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0530 -1.2327 -0.2714 9 6 1.3455 -2.4123 0.3538 10 6 0.1909 -2.3926 1.1656 11 6 -0.4220 -3.5836 1.4869 12 7 0.0483 -4.7343 1.0456 13 6 1.1337 -4.8098 0.2836 14 6 1.6155 -6.1346 -0.1759 15 6 0.9329 -7.2925 0.1972 16 6 1.3793 -8.5230 -0.2294 17 6 2.5165 -8.6119 -1.0358 18 6 2.9960 -9.9317 -1.4945 19 7 2.4432 -11.0885 -1.2127 20 6 3.1559 -12.0593 -1.8025 21 6 4.1746 -11.4794 -2.4639 22 8 4.0720 -10.1497 -2.2705 23 6 3.2030 -7.4523 -1.4037 24 6 2.7512 -6.2222 -0.9815 25 6 1.8194 -3.6613 -0.0926 26 1 -0.4851 0.8400 0.0004 27 1 -0.2063 -1.4567 1.5297 28 1 -1.3060 -3.5747 2.1074 29 1 0.0539 -7.2237 0.8210 30 1 0.8503 -9.4193 0.0593 31 1 2.9493 -13.1184 -1.7553 32 1 4.9332 -11.9857 -3.0426 33 1 4.0849 -7.5203 -2.0234 34 1 3.2788 -5.3252 -1.2701 35 1 2.6994 -3.7251 -0.7153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245619379.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = 54.523018 kcal Electronic energy + Delta-G solvation = -20795.571227 eV Core-core repulsion = 17530.829476 eV Total energy + Delta-G solvation = -3264.741751 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.23395 -40.75028 -39.43928 -36.08980 -35.79034 -33.97792 -32.80825 -31.94006 -31.30879 -29.20307 -27.89318 -25.32406 -24.41332 -23.43849 -22.94658 -22.22759 -21.74407 -19.47271 -18.97052 -17.61527 -17.60129 -16.95870 -16.69839 -16.61931 -16.14123 -15.70818 -15.21099 -15.11852 -14.67220 -14.49033 -14.44323 -14.16858 -14.05709 -13.68233 -13.22816 -12.97789 -12.86876 -12.55069 -12.44260 -12.12032 -11.97814 -11.74665 -11.59822 -11.27575 -10.93314 -10.03425 -9.99195 -9.92341 -9.73755 -8.81017 -8.68922 -6.58854 -0.58978 0.41988 0.58582 0.90664 1.18897 1.39233 1.50903 1.56659 1.69983 1.83673 2.17363 2.65345 2.94155 3.00976 3.51451 3.74084 3.86835 3.98017 4.07384 4.13700 4.27209 4.40223 4.46093 4.61531 4.77197 4.87104 4.89378 4.95502 4.95832 5.09954 5.19179 5.20123 5.29378 5.39839 5.43575 5.48911 5.70955 5.85005 5.89073 6.16126 6.48283 6.70746 6.76460 6.77777 7.63057 8.22187 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.002933 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.294210 B = 9543.646850 C =10301.141147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.485 4.485 8 H 0.086 0.914 9 C 0.097 3.903 10 C -0.232 4.232 11 C 0.086 3.914 12 N -0.571 5.571 13 C 0.143 3.857 14 C -0.020 4.020 15 C -0.097 4.097 16 C -0.073 4.073 17 C -0.035 4.035 18 C 0.217 3.783 19 N -0.500 5.500 20 C -0.060 4.060 21 C -0.060 4.060 22 O -0.206 6.206 23 C -0.082 4.082 24 C -0.110 4.110 25 C -0.265 4.265 26 H 0.293 0.707 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.215 0.785 32 H 0.264 0.736 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -14.602 -4.566 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.515 4.515 8 H 0.104 0.896 9 C 0.090 3.910 10 C -0.255 4.255 11 C -0.067 4.067 12 N -0.286 5.286 13 C 0.010 3.990 14 C -0.021 4.021 15 C -0.115 4.115 16 C -0.092 4.092 17 C -0.037 4.037 18 C 0.015 3.985 19 N -0.230 5.230 20 C -0.200 4.200 21 C -0.130 4.130 22 O -0.092 6.092 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.288 4.288 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.166 0.834 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.232 0.768 32 H 0.280 0.720 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.548 -15.274 -3.986 17.090 hybrid contribution 0.920 1.660 -0.538 1.973 sum 7.468 -13.614 -4.525 16.173 Atomic orbital electron populations 1.69798 1.09220 1.31296 1.33530 1.26872 0.95523 1.04813 0.90750 0.85158 0.78750 0.75049 0.80263 1.18081 1.19100 1.18348 1.19890 0.98351 0.91703 1.41597 0.89565 1.18178 0.91432 0.93214 0.88201 1.22281 1.01111 0.98419 1.03652 1.22357 0.98628 0.87993 0.97699 1.67380 1.14931 1.29117 1.17161 1.19598 0.92263 0.92040 0.95104 1.19044 0.95173 0.91467 0.96434 1.21222 1.00119 0.90651 0.99544 1.21102 0.94579 0.97973 0.95522 1.17439 0.97724 0.86615 1.01882 1.23792 0.85698 0.94642 0.94366 1.70625 1.29979 0.98534 1.23901 1.23989 0.94597 1.01507 0.99879 1.26134 1.03774 0.78653 1.04435 1.84520 1.41936 1.28270 1.54451 1.21220 0.99753 0.90139 0.99020 1.21294 0.95692 0.98558 0.97344 1.22102 1.05282 0.92694 1.08721 0.89556 0.86525 0.83364 0.84655 0.83730 0.76814 0.71993 0.82824 0.84036 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.58 10.92 21.84 0.24 -40.35 16 2 C 0.04 1.82 5.20 85.29 0.44 2.26 16 3 Si 0.99 35.91 29.59 68.60 2.03 37.94 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.49 -24.93 9.12 23.52 0.21 -24.72 16 8 H 0.09 4.19 7.90 -2.91 -0.02 4.17 16 9 C 0.10 5.16 5.60 -21.12 -0.12 5.04 16 10 C -0.23 -12.05 8.79 22.87 0.20 -11.85 16 11 C 0.09 4.09 11.15 84.57 0.94 5.03 16 12 N -0.57 -27.27 9.38 -185.38 -1.74 -29.00 16 13 C 0.14 6.62 6.72 41.83 0.28 6.90 16 14 C -0.02 -0.76 5.88 -20.00 -0.12 -0.88 16 15 C -0.10 -3.38 9.55 22.44 0.21 -3.16 16 16 C -0.07 -2.21 9.67 22.49 0.22 -1.99 16 17 C -0.04 -1.02 5.88 -20.07 -0.12 -1.14 16 18 C 0.22 5.91 7.89 87.29 0.69 6.60 16 19 N -0.50 -13.31 10.90 -305.10 -3.33 -16.63 16 20 C -0.06 -1.08 11.87 83.51 0.99 -0.09 16 21 C -0.06 -0.89 12.17 66.98 0.82 -0.07 16 22 O -0.21 -4.66 10.51 -8.37 -0.09 -4.75 16 23 C -0.08 -2.28 9.70 22.49 0.22 -2.06 16 24 C -0.11 -3.58 9.39 22.44 0.21 -3.37 16 25 C -0.27 -12.84 9.25 23.08 0.21 -12.63 16 26 H 0.29 13.15 8.29 -92.71 -0.77 12.39 16 27 H 0.12 6.17 6.20 -2.91 -0.02 6.15 16 28 H 0.15 6.10 8.06 -2.91 -0.02 6.07 16 29 H 0.14 4.82 7.52 -2.91 -0.02 4.80 16 30 H 0.14 4.01 7.82 -2.91 -0.02 3.99 16 31 H 0.22 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.26 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.15 3.41 7.89 -2.91 -0.02 3.39 16 34 H 0.14 4.34 6.15 -2.91 -0.02 4.33 16 35 H 0.12 5.28 6.17 -2.91 -0.02 5.26 16 Total: -1.00 -64.20 312.58 3.55 -60.65 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 1.14 Total: 28.27 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 5.30 Total: -36.12 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -4.83 Total: -85.98 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.09 Total: -4.75 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -64.20 3.55 -60.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245619379.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.174 kcal (2) G-P(sol) polarization free energy of solvation -64.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds