Wall clock time and date at job start Tue Mar 31 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48503 * 109.47101 * 269.99748 * 3 2 1 5 5 H 1.48501 * 109.47335 * 30.00016 * 3 2 1 6 6 H 1.48505 * 109.47064 * 149.99951 * 3 2 1 7 7 C 1.40076 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.40898 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.40931 * 119.67435 * 180.02562 * 9 7 2 11 11 C 1.36590 * 119.26831 * 179.67241 * 10 9 7 12 12 C 1.40404 * 118.59821 * 0.56556 * 11 10 9 13 13 C 1.47738 * 120.35337 * 179.72819 * 12 11 10 14 14 C 1.39850 * 120.00051 * 179.72632 * 13 12 11 15 15 C 1.36565 * 120.00286 * 179.69936 * 14 13 12 16 16 C 1.39855 * 119.99577 * 0.30180 * 15 14 13 17 17 C 1.47579 * 119.99789 * 179.97438 * 16 15 14 18 18 N 1.31350 * 125.72862 * 359.68624 * 17 16 15 19 19 C 1.34024 * 108.65356 * 179.89705 * 18 17 16 20 20 C 1.34716 * 107.84847 * 0.37022 * 19 18 17 21 21 O 1.34474 * 125.72944 * 180.02562 * 17 16 15 22 22 C 1.39846 * 120.00306 * 359.95370 * 16 15 14 23 23 C 1.36565 * 120.00115 * 0.04630 * 22 16 15 24 24 C 1.40196 * 119.28976 * 359.45480 * 12 11 10 25 25 N 1.31149 * 120.67660 * 0.25256 * 24 12 11 26 26 H 0.97009 * 119.99886 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.36486 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.70514 * 180.29902 * 11 10 9 29 29 H 1.08002 * 120.00205 * 359.97438 * 14 13 12 30 30 H 1.07999 * 120.00305 * 180.27958 * 15 14 13 31 31 H 1.08000 * 126.07617 * 180.16440 * 19 18 17 32 32 H 1.08000 * 126.36073 * 179.79142 * 20 19 18 33 33 H 1.08002 * 120.00435 * 180.02562 * 22 16 15 34 34 H 1.07999 * 120.00305 * 179.97438 * 23 22 16 35 35 H 1.08001 * 119.65977 * 180.27305 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4401 0.7001 7 6 2.0076 -1.2131 0.0005 8 1 3.0876 -1.2132 0.0010 9 6 1.3031 -2.4333 0.0005 10 6 2.0147 -3.6498 0.0016 11 6 1.3233 -4.8278 0.0084 12 6 -0.0800 -4.7835 0.0020 13 6 -0.8664 -6.0342 0.0029 14 6 -2.2639 -5.9815 0.0022 15 6 -2.9909 -7.1376 -0.0031 16 6 -2.3377 -8.3742 -0.0015 17 6 -3.1233 -9.6236 -0.0067 18 7 -4.4342 -9.7053 -0.0071 19 6 -4.7830 -10.9993 -0.0147 20 6 -3.6524 -11.7318 -0.0108 21 8 -2.6171 -10.8694 -0.0053 22 6 -0.9403 -8.4270 0.0046 23 6 -0.2133 -7.2709 0.0099 24 6 -0.7270 -3.5398 0.0004 25 7 -0.0351 -2.4256 0.0000 26 1 -0.4850 0.8401 -0.0004 27 1 3.0947 -3.6505 0.0021 28 1 1.8451 -5.7734 0.0143 29 1 -2.7683 -5.0265 0.0014 30 1 -4.0701 -7.0969 -0.0082 31 1 -5.7914 -11.3862 -0.0195 32 1 -3.5879 -12.8099 -0.0118 33 1 -0.4359 -9.3820 0.0054 34 1 0.8659 -7.3117 0.0151 35 1 -1.8062 -3.4988 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245619472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:58 Heat of formation + Delta-G solvation = 78.889381 kcal Electronic energy + Delta-G solvation = -20750.998764 eV Core-core repulsion = 17487.313618 eV Total energy + Delta-G solvation = -3263.685146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.17210 -39.17196 -37.86618 -34.72693 -34.12149 -32.51723 -31.22221 -30.44009 -30.14117 -28.30661 -25.85135 -23.38356 -23.28084 -22.27915 -21.47413 -20.75347 -20.22002 -18.00766 -17.70079 -16.52617 -16.29940 -15.76937 -15.44957 -15.04079 -14.60752 -14.26307 -13.67097 -13.45308 -13.19578 -13.12468 -12.88810 -12.88010 -12.20984 -12.20043 -11.75525 -11.43095 -11.30767 -11.18583 -10.95445 -10.77509 -10.57207 -10.35357 -10.12184 -9.95230 -9.41921 -8.71805 -8.59522 -8.28389 -7.79691 -7.22063 -6.70456 -4.74962 0.78145 1.80361 1.85272 2.53720 2.74797 2.85902 2.93205 2.94374 2.96781 3.19087 3.71622 4.10825 4.22635 4.61442 4.90470 4.96274 5.21609 5.28907 5.51658 5.64124 5.70665 5.72919 5.78455 5.89825 5.95262 6.00609 6.18909 6.32195 6.40225 6.54757 6.58803 6.74528 6.79255 6.83063 6.94184 7.15661 7.26686 7.45425 7.61510 7.77409 7.78181 7.93536 8.32480 8.62686 9.83531 9.98764 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.053468 B = 0.002693 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.551848 B =10393.733593 C =10907.428708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.059 3.941 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.395 4.395 8 H 0.090 0.910 9 C 0.249 3.751 10 C -0.271 4.271 11 C -0.031 4.031 12 C -0.290 4.290 13 C 0.067 3.933 14 C -0.158 4.158 15 C -0.046 4.046 16 C -0.092 4.092 17 C 0.263 3.737 18 N -0.493 5.493 19 C -0.037 4.037 20 C -0.097 4.097 21 O -0.201 6.201 22 C -0.066 4.066 23 C -0.159 4.159 24 C 0.166 3.834 25 N -0.489 5.489 26 H 0.280 0.720 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.182 0.818 32 H 0.212 0.788 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -12.715 -0.011 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.169 4.169 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.423 4.423 8 H 0.108 0.892 9 C 0.127 3.873 10 C -0.293 4.293 11 C -0.053 4.053 12 C -0.295 4.295 13 C 0.066 3.934 14 C -0.176 4.176 15 C -0.065 4.065 16 C -0.094 4.094 17 C 0.060 3.940 18 N -0.221 5.221 19 C -0.177 4.177 20 C -0.168 4.168 21 O -0.088 6.088 22 C -0.086 4.086 23 C -0.178 4.178 24 C -0.005 4.005 25 N -0.201 5.201 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.199 0.801 32 H 0.229 0.771 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.521 -11.181 -0.001 12.061 hybrid contribution 1.073 -1.109 -0.006 1.543 sum -3.449 -12.290 -0.007 12.765 Atomic orbital electron populations 1.70118 1.07454 1.28728 1.24764 1.26252 0.95101 1.01728 0.93815 0.86198 0.80476 0.79990 0.79596 1.19035 1.19736 1.18222 1.19882 0.94857 0.89623 1.37986 0.89153 1.18704 0.88653 0.91989 0.87943 1.21444 0.99005 0.93533 1.15347 1.20691 0.93016 0.96851 0.94782 1.19051 0.93215 0.92379 1.24877 1.19130 0.92528 0.92747 0.89037 1.20884 0.93395 0.98021 1.05347 1.20687 1.00009 0.90274 0.95528 1.17103 0.91557 0.86491 1.14210 1.24139 0.87728 0.83944 0.98148 1.70677 1.10723 1.20526 1.20220 1.23343 1.00303 0.88728 1.05305 1.25027 0.85182 0.96555 1.09987 1.84509 1.37468 1.16917 1.69951 1.20721 0.92030 0.98601 0.97227 1.20805 0.99933 0.91359 1.05662 1.22853 0.98820 0.87812 0.90976 1.68819 1.07008 1.26384 1.17867 0.90878 0.87967 0.88096 0.85287 0.85365 0.80133 0.77121 0.86276 0.85796 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.07 11.44 55.55 0.64 -16.43 16 2 C 0.06 1.39 5.50 -17.33 -0.10 1.30 16 3 Si 0.91 17.00 29.56 -169.99 -5.02 11.97 16 4 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 7 C -0.39 -9.72 9.11 -37.89 -0.35 -10.06 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.25 6.36 6.55 -84.97 -0.56 5.81 16 10 C -0.27 -6.19 9.76 -39.16 -0.38 -6.57 16 11 C -0.03 -0.64 9.46 -39.36 -0.37 -1.01 16 12 C -0.29 -6.13 5.92 -104.46 -0.62 -6.75 16 13 C 0.07 1.24 5.89 -104.81 -0.62 0.62 16 14 C -0.16 -2.68 9.38 -39.58 -0.37 -3.05 16 15 C -0.05 -0.73 9.63 -39.58 -0.38 -1.11 16 16 C -0.09 -1.47 5.88 -104.88 -0.62 -2.09 16 17 C 0.26 4.09 7.88 -13.95 -0.11 3.98 16 18 N -0.49 -7.55 10.89 -11.75 -0.13 -7.68 16 19 C -0.04 -0.43 11.88 -17.84 -0.21 -0.64 16 20 C -0.10 -1.01 12.18 29.48 0.36 -0.65 16 21 O -0.20 -2.79 10.51 4.04 0.04 -2.74 16 22 C -0.07 -1.01 9.65 -39.58 -0.38 -1.39 16 23 C -0.16 -2.62 9.38 -39.58 -0.37 -2.99 16 24 C 0.17 3.80 10.60 -17.11 -0.18 3.62 16 25 N -0.49 -12.68 7.83 -10.83 -0.08 -12.77 16 26 H 0.28 6.18 8.29 -40.82 -0.34 5.85 16 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.10 1.81 6.28 -52.49 -0.33 1.48 16 29 H 0.13 2.05 6.20 -52.49 -0.33 1.72 16 30 H 0.13 1.91 7.82 -52.49 -0.41 1.50 16 31 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.57 7.89 -52.49 -0.41 1.16 16 34 H 0.12 1.87 6.23 -52.49 -0.33 1.54 16 35 H 0.13 2.55 6.20 -52.49 -0.33 2.22 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -28.70 311.12 -8.07 -36.77 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -2.95 Total: 7.20 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -5.25 Total: -21.01 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.42 Total: -36.88 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.02 Total: 11.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.70 -8.07 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245619472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.659 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds