Wall clock time and date at job start Tue Mar 31 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48503 * 109.47101 * 269.99748 * 3 2 1 5 5 H 1.48501 * 109.47335 * 30.00016 * 3 2 1 6 6 H 1.48505 * 109.47064 * 149.99951 * 3 2 1 7 7 C 1.40076 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.40898 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.40931 * 119.67435 * 180.02562 * 9 7 2 11 11 C 1.36590 * 119.26831 * 179.67241 * 10 9 7 12 12 C 1.40404 * 118.59821 * 0.56556 * 11 10 9 13 13 C 1.47738 * 120.35337 * 179.72819 * 12 11 10 14 14 C 1.39850 * 120.00051 * 179.72632 * 13 12 11 15 15 C 1.36565 * 120.00286 * 179.69936 * 14 13 12 16 16 C 1.39855 * 119.99577 * 0.30180 * 15 14 13 17 17 C 1.47579 * 119.99789 * 179.97438 * 16 15 14 18 18 N 1.31350 * 125.72862 * 359.68624 * 17 16 15 19 19 C 1.34024 * 108.65356 * 179.89705 * 18 17 16 20 20 C 1.34716 * 107.84847 * 0.37022 * 19 18 17 21 21 O 1.34474 * 125.72944 * 180.02562 * 17 16 15 22 22 C 1.39846 * 120.00306 * 359.95370 * 16 15 14 23 23 C 1.36565 * 120.00115 * 0.04630 * 22 16 15 24 24 C 1.40196 * 119.28976 * 359.45480 * 12 11 10 25 25 N 1.31149 * 120.67660 * 0.25256 * 24 12 11 26 26 H 0.97009 * 119.99886 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.36486 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.70514 * 180.29902 * 11 10 9 29 29 H 1.08002 * 120.00205 * 359.97438 * 14 13 12 30 30 H 1.07999 * 120.00305 * 180.27958 * 15 14 13 31 31 H 1.08000 * 126.07617 * 180.16440 * 19 18 17 32 32 H 1.08000 * 126.36073 * 179.79142 * 20 19 18 33 33 H 1.08002 * 120.00435 * 180.02562 * 22 16 15 34 34 H 1.07999 * 120.00305 * 179.97438 * 23 22 16 35 35 H 1.08001 * 119.65977 * 180.27305 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4401 0.7001 7 6 2.0076 -1.2131 0.0005 8 1 3.0876 -1.2132 0.0010 9 6 1.3031 -2.4333 0.0005 10 6 2.0147 -3.6498 0.0016 11 6 1.3233 -4.8278 0.0084 12 6 -0.0800 -4.7835 0.0020 13 6 -0.8664 -6.0342 0.0029 14 6 -2.2639 -5.9815 0.0022 15 6 -2.9909 -7.1376 -0.0031 16 6 -2.3377 -8.3742 -0.0015 17 6 -3.1233 -9.6236 -0.0067 18 7 -4.4342 -9.7053 -0.0071 19 6 -4.7830 -10.9993 -0.0147 20 6 -3.6524 -11.7318 -0.0108 21 8 -2.6171 -10.8694 -0.0053 22 6 -0.9403 -8.4270 0.0046 23 6 -0.2133 -7.2709 0.0099 24 6 -0.7270 -3.5398 0.0004 25 7 -0.0351 -2.4256 0.0000 26 1 -0.4850 0.8401 -0.0004 27 1 3.0947 -3.6505 0.0021 28 1 1.8451 -5.7734 0.0143 29 1 -2.7683 -5.0265 0.0014 30 1 -4.0701 -7.0969 -0.0082 31 1 -5.7914 -11.3862 -0.0195 32 1 -3.5879 -12.8099 -0.0118 33 1 -0.4359 -9.3820 0.0054 34 1 0.8659 -7.3117 0.0151 35 1 -1.8062 -3.4988 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245619472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:58 Heat of formation + Delta-G solvation = 62.119193 kcal Electronic energy + Delta-G solvation = -20751.725974 eV Core-core repulsion = 17487.313618 eV Total energy + Delta-G solvation = -3264.412356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.18282 -40.67170 -39.42371 -35.86273 -35.68436 -33.96112 -32.78475 -31.87021 -31.55196 -29.64093 -27.41106 -24.77567 -24.66562 -23.49563 -22.86229 -22.15059 -21.61361 -19.50107 -19.01171 -17.68165 -17.56219 -17.31714 -16.67063 -16.42137 -16.02856 -15.64039 -15.03649 -14.87082 -14.56609 -14.44781 -14.38850 -14.06254 -13.71938 -13.71620 -13.26501 -12.89498 -12.73886 -12.60094 -12.42442 -12.19460 -11.88112 -11.73927 -11.51710 -11.44097 -10.83893 -10.20332 -9.99312 -9.73207 -9.55137 -8.71608 -8.39869 -6.53073 -0.47415 0.55439 0.60202 1.08395 1.26082 1.40522 1.53200 1.55936 1.76321 1.89412 2.18386 2.70988 3.07522 3.10069 3.86131 3.92269 4.01281 4.03556 4.11265 4.14715 4.25539 4.37736 4.51383 4.55247 4.71677 4.82673 4.88195 4.95844 4.98677 5.10691 5.14237 5.25883 5.41851 5.45795 5.47927 5.52094 5.74452 5.94788 6.03621 6.06473 6.21157 6.60998 6.75575 6.86195 8.09946 8.32155 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.053468 B = 0.002693 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.551848 B =10393.733593 C =10907.428708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.018 3.982 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.439 4.439 8 H 0.098 0.902 9 C 0.218 3.782 10 C -0.288 4.288 11 C -0.033 4.033 12 C -0.277 4.277 13 C 0.035 3.965 14 C -0.153 4.153 15 C -0.055 4.055 16 C -0.077 4.077 17 C 0.226 3.774 18 N -0.510 5.510 19 C -0.060 4.060 20 C -0.069 4.069 21 O -0.208 6.208 22 C -0.068 4.068 23 C -0.148 4.148 24 C 0.139 3.861 25 N -0.524 5.524 26 H 0.284 0.716 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.213 0.787 32 H 0.263 0.737 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -16.105 -0.001 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.206 4.206 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.469 4.469 8 H 0.116 0.884 9 C 0.095 3.905 10 C -0.310 4.310 11 C -0.056 4.056 12 C -0.282 4.282 13 C 0.033 3.967 14 C -0.171 4.171 15 C -0.074 4.074 16 C -0.079 4.079 17 C 0.024 3.976 18 N -0.240 5.240 19 C -0.199 4.199 20 C -0.138 4.138 21 O -0.094 6.094 22 C -0.087 4.087 23 C -0.166 4.166 24 C -0.029 4.029 25 N -0.237 5.237 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.230 0.770 32 H 0.278 0.722 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.812 -14.618 0.009 15.389 hybrid contribution 0.853 -0.676 -0.011 1.088 sum -3.959 -15.294 -0.002 15.798 Atomic orbital electron populations 1.70214 1.09127 1.29788 1.26906 1.27158 0.95806 1.04995 0.92609 0.85057 0.79047 0.75140 0.79638 1.18567 1.19194 1.17531 1.20183 0.95393 0.90449 1.40836 0.88423 1.19161 0.89007 0.93523 0.88815 1.21644 0.99848 0.93503 1.16002 1.21055 0.93085 0.97696 0.93774 1.19317 0.93758 0.92933 1.22215 1.19098 0.92946 0.92411 0.92247 1.20973 0.93132 0.98674 1.04311 1.20764 1.00451 0.90142 0.96051 1.17361 0.92186 0.87005 1.11299 1.23925 0.87917 0.84412 1.01359 1.70628 1.10865 1.22949 1.19531 1.23970 1.02420 0.87520 1.06023 1.26094 0.83886 0.98098 1.05769 1.84510 1.38599 1.16704 1.69634 1.20946 0.91748 0.99286 0.96718 1.20993 1.00860 0.90800 1.03939 1.23179 0.99582 0.88248 0.91913 1.68754 1.07725 1.27984 1.19195 0.90498 0.86569 0.84660 0.85053 0.84570 0.77025 0.72151 0.83687 0.84191 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.57 11.44 21.85 0.25 -38.32 16 2 C 0.02 0.88 5.50 85.30 0.47 1.35 16 3 Si 0.99 36.02 29.56 68.60 2.03 38.05 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 7 C -0.44 -22.74 9.11 23.37 0.21 -22.53 16 8 H 0.10 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.22 11.69 6.55 40.15 0.26 11.95 16 10 C -0.29 -13.48 9.76 22.54 0.22 -13.26 16 11 C -0.03 -1.39 9.46 22.41 0.21 -1.18 16 12 C -0.28 -11.82 5.92 -19.76 -0.12 -11.94 16 13 C 0.03 1.25 5.89 -19.98 -0.12 1.13 16 14 C -0.15 -5.12 9.38 22.27 0.21 -4.91 16 15 C -0.05 -1.70 9.63 22.27 0.21 -1.49 16 16 C -0.08 -2.31 5.88 -20.03 -0.12 -2.43 16 17 C 0.23 6.46 7.88 87.23 0.69 7.15 16 18 N -0.51 -14.36 10.89 -305.08 -3.32 -17.69 16 19 C -0.06 -1.17 11.88 83.55 0.99 -0.18 16 20 C -0.07 -1.11 12.18 67.01 0.82 -0.29 16 21 O -0.21 -4.98 10.51 -8.45 -0.09 -5.07 16 22 C -0.07 -1.88 9.65 22.27 0.21 -1.67 16 23 C -0.15 -4.53 9.38 22.27 0.21 -4.32 16 24 C 0.14 6.61 10.60 85.27 0.90 7.52 16 25 N -0.52 -28.68 7.83 -188.17 -1.47 -30.15 16 26 H 0.28 13.28 8.29 -92.70 -0.77 12.51 16 27 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 28 H 0.14 4.57 6.28 -2.91 -0.02 4.55 16 29 H 0.13 4.23 6.20 -2.91 -0.02 4.21 16 30 H 0.14 3.95 7.82 -2.91 -0.02 3.92 16 31 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.26 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.15 3.28 7.89 -2.91 -0.02 3.26 16 34 H 0.14 3.79 6.23 -2.91 -0.02 3.77 16 35 H 0.14 5.89 6.20 -2.91 -0.02 5.88 16 Total: -1.00 -65.91 311.12 3.80 -62.11 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 1.14 Total: 26.17 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 5.27 Total: -35.10 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -4.55 Total: -86.16 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.09 Total: -5.07 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -65.91 3.80 -62.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245619472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.227 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds