Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48504 * 109.47414 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47036 * 299.99833 * 3 2 1 6 6 H 1.48499 * 109.47473 * 59.99579 * 3 2 1 7 7 C 1.39927 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99992 * 197.54623 * 7 2 1 9 9 C 1.41442 * 119.99990 * 17.55073 * 7 2 1 10 10 C 1.40813 * 120.60473 * 203.47864 * 9 7 2 11 11 N 1.31501 * 120.68093 * 180.02562 * 10 9 7 12 12 C 1.31927 * 122.12434 * 0.02562 * 11 10 9 13 13 C 1.39719 * 121.14735 * 0.24948 * 12 11 10 14 14 C 1.48305 * 120.42086 * 179.74627 * 13 12 11 15 15 C 1.39481 * 119.98016 * 179.72991 * 14 13 12 16 16 C 1.37685 * 120.02767 * 179.71892 * 15 14 13 17 17 C 1.39692 * 119.96779 * 0.57655 * 16 15 14 18 18 C 1.47725 * 120.01917 * 179.67837 * 17 16 15 19 19 N 1.31268 * 125.72674 * 179.71023 * 18 17 16 20 20 C 1.34137 * 108.64120 * 179.89308 * 19 18 17 21 21 C 1.34571 * 107.85074 * 0.36798 * 20 19 18 22 22 O 1.34451 * 125.72886 * 0.02562 * 18 17 16 23 23 C 1.39685 * 119.95678 * 359.69557 * 17 16 15 24 24 C 1.37676 * 119.97330 * 0.02562 * 23 17 16 25 25 C 1.39245 * 119.16545 * 359.49677 * 13 12 11 26 26 H 0.96994 * 120.00288 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.65958 * 0.04417 * 10 9 7 28 28 H 1.08005 * 119.42713 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.98852 * 359.97438 * 15 14 13 30 30 H 1.07992 * 120.01171 * 180.26962 * 16 15 14 31 31 H 1.08004 * 126.07456 * 180.14314 * 20 19 18 32 32 H 1.07993 * 126.36156 * 179.81019 * 21 20 19 33 33 H 1.08001 * 120.01662 * 179.97438 * 23 17 16 34 34 H 1.08001 * 119.99133 * 180.02562 * 24 23 17 35 35 H 1.08002 * 120.95175 * 180.21311 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3466 -0.0006 5 1 1.8834 2.3965 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0503 -1.2333 0.2825 9 6 1.3502 -2.4084 -0.3683 10 6 1.8311 -3.6561 0.0730 11 7 1.2210 -4.7696 -0.2694 12 6 0.1447 -4.7738 -1.0323 13 6 -0.3994 -3.5833 -1.5209 14 6 -1.6067 -3.6071 -2.3819 15 6 -2.1455 -2.4127 -2.8600 16 6 -3.2629 -2.4341 -3.6641 17 6 -3.8640 -3.6519 -3.9912 18 6 -5.0671 -3.6757 -4.8481 19 7 -5.7164 -4.7514 -5.2281 20 6 -6.7528 -4.3786 -5.9938 21 6 -6.7319 -3.0366 -6.0913 22 8 -5.6775 -2.5996 -5.3746 23 6 -3.3270 -4.8471 -3.5072 24 6 -2.2062 -4.8237 -2.7080 25 6 0.2030 -2.3737 -1.1850 26 1 -0.4850 0.8400 -0.0004 27 1 2.7099 -3.6990 0.6995 28 1 -0.3214 -5.7141 -1.2871 29 1 -1.6836 -1.4710 -2.6027 30 1 -3.6773 -1.5095 -4.0378 31 1 -7.4735 -5.0386 -6.4536 32 1 -7.4306 -2.4237 -6.6412 33 1 -3.7912 -5.7892 -3.7591 34 1 -1.7904 -5.7476 -2.3339 35 1 -0.1954 -1.4361 -1.5438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245621184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = 70.048010 kcal Electronic energy + Delta-G solvation = -21077.922859 eV Core-core repulsion = 17813.854322 eV Total energy + Delta-G solvation = -3264.068537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.28702 -39.28357 -37.91670 -34.82305 -34.22583 -33.06408 -30.99965 -30.44189 -30.17581 -27.89899 -25.79572 -23.93199 -23.27383 -22.26926 -21.56267 -20.85937 -20.20140 -18.07547 -17.49251 -16.63004 -16.29420 -15.59780 -15.46198 -15.36481 -14.81756 -14.54496 -13.77860 -13.50017 -13.27792 -13.23158 -13.00049 -12.94112 -12.28620 -11.99671 -11.69315 -11.44648 -11.37662 -11.30542 -11.24377 -10.78155 -10.65650 -10.48776 -9.95365 -9.91374 -9.49028 -8.75322 -8.71556 -8.22962 -7.96820 -7.29593 -6.95972 -4.61170 0.64558 1.66919 1.71151 2.47346 2.63034 2.69049 2.96611 3.01485 3.04136 3.09281 3.76833 3.96630 4.12593 4.52534 4.81469 4.87688 5.12325 5.19890 5.27456 5.53977 5.55226 5.60128 5.66886 5.82140 5.94040 6.02047 6.13693 6.23674 6.41216 6.54861 6.59651 6.61015 6.69705 6.93704 7.00044 7.09188 7.18266 7.54070 7.65250 7.71423 7.78273 8.28286 8.54096 8.56854 9.49121 9.93597 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.003687 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.005039 B = 7593.024437 C = 8915.510768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.059 3.941 10 C -0.012 4.012 11 N -0.470 5.470 12 C -0.020 4.020 13 C -0.103 4.103 14 C 0.022 3.978 15 C -0.119 4.119 16 C -0.081 4.081 17 C -0.055 4.055 18 C 0.254 3.746 19 N -0.485 5.485 20 C -0.039 4.039 21 C -0.087 4.087 22 O -0.199 6.199 23 C -0.064 4.064 24 C -0.127 4.127 25 C -0.111 4.111 26 H 0.284 0.716 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.184 0.816 32 H 0.214 0.786 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -0.806 -9.260 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.054 3.946 10 C -0.173 4.173 11 N -0.176 5.176 12 C -0.178 4.178 13 C -0.106 4.106 14 C 0.020 3.980 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.056 4.056 18 C 0.051 3.949 19 N -0.214 5.214 20 C -0.179 4.179 21 C -0.158 4.158 22 O -0.085 6.085 23 C -0.083 4.083 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.201 0.799 32 H 0.231 0.769 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.869 -2.009 -8.785 13.364 hybrid contribution -0.579 2.365 -0.619 2.512 sum -10.448 0.355 -9.403 14.061 Atomic orbital electron populations 1.69778 1.07696 1.29733 1.34171 1.25980 0.94815 1.01707 0.91954 0.86184 0.81046 0.80400 0.78775 1.18160 1.19516 1.19775 1.19608 0.98263 0.90724 1.39047 0.89651 1.18489 0.92155 0.93829 0.90108 1.22596 1.02371 0.88006 1.04343 1.66961 1.07805 1.31934 1.10944 1.21827 0.96811 0.95403 1.03714 1.19466 0.95356 0.95718 1.00021 1.19235 0.93193 0.92623 0.92904 1.21292 0.95834 0.99003 0.97513 1.21074 0.95481 0.96345 0.97193 1.17224 0.92205 0.95189 1.00984 1.24073 0.95506 0.78702 0.96587 1.70681 1.07253 1.29011 1.14450 1.23357 0.98908 0.94062 1.01544 1.25068 0.92609 0.96558 1.01565 1.84530 1.35006 1.37738 1.51257 1.20973 0.95047 0.96772 0.95520 1.21194 0.95859 0.98239 0.99151 1.21894 0.97592 0.96085 0.98034 0.90452 0.85436 0.85819 0.84458 0.85604 0.79929 0.76909 0.84856 0.84784 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.68 10.92 55.55 0.61 -18.07 16 2 C 0.07 1.71 5.18 -17.35 -0.09 1.62 16 3 Si 0.91 17.26 29.59 -169.99 -5.03 12.23 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -10.94 9.08 -37.73 -0.34 -11.29 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.06 1.47 5.59 -106.71 -0.60 0.87 16 10 C -0.01 -0.29 10.96 -16.72 -0.18 -0.48 16 11 N -0.47 -11.22 10.32 -12.27 -0.13 -11.34 16 12 C -0.02 -0.43 10.60 -16.96 -0.18 -0.61 16 13 C -0.10 -2.28 5.88 -104.83 -0.62 -2.89 16 14 C 0.02 0.41 5.88 -104.83 -0.62 -0.21 16 15 C -0.12 -2.08 9.42 -39.32 -0.37 -2.45 16 16 C -0.08 -1.26 9.70 -39.24 -0.38 -1.64 16 17 C -0.05 -0.85 5.88 -104.94 -0.62 -1.47 16 18 C 0.25 3.81 7.89 -13.92 -0.11 3.70 16 19 N -0.49 -7.09 10.90 -11.74 -0.13 -7.22 16 20 C -0.04 -0.43 11.87 -17.84 -0.21 -0.64 16 21 C -0.09 -0.87 12.17 29.44 0.36 -0.51 16 22 O -0.20 -2.68 10.51 3.99 0.04 -2.63 16 23 C -0.06 -0.97 9.67 -39.25 -0.38 -1.35 16 24 C -0.13 -2.06 9.42 -39.32 -0.37 -2.43 16 25 C -0.11 -2.66 8.16 -38.21 -0.31 -2.97 16 26 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 27 H 0.13 2.85 8.06 -52.48 -0.42 2.43 16 28 H 0.12 2.37 6.18 -52.48 -0.32 2.05 16 29 H 0.14 2.46 6.24 -52.48 -0.33 2.14 16 30 H 0.13 1.71 7.89 -52.49 -0.41 1.29 16 31 H 0.18 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.13 1.84 7.82 -52.49 -0.41 1.43 16 34 H 0.13 1.98 6.20 -52.49 -0.33 1.65 16 35 H 0.13 3.21 4.43 -52.49 -0.23 2.97 16 LS Contribution 310.05 15.07 4.67 4.67 Total: -1.00 -28.20 310.05 -7.83 -36.04 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.85 Total: 9.07 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -5.02 Total: -22.75 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.35 Total: -36.63 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.20 -7.83 -36.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245621184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.084 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds