Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86799 * 120.00508 * 2 1 4 4 H 1.48495 * 109.47643 * 89.99446 * 3 2 1 5 5 H 1.48499 * 109.46860 * 209.99759 * 3 2 1 6 6 H 1.48506 * 109.46947 * 329.99433 * 3 2 1 7 7 C 1.40038 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99826 * 15.80316 * 7 2 1 9 9 C 1.41421 * 120.00181 * 195.80027 * 7 2 1 10 10 C 1.40468 * 119.77938 * 188.66213 * 9 7 2 11 11 C 1.39365 * 118.83100 * 179.77888 * 10 9 7 12 12 C 1.48284 * 120.83099 * 180.24154 * 11 10 9 13 13 C 1.39497 * 119.97394 * 359.97438 * 12 11 10 14 14 C 1.37678 * 120.02432 * 179.76419 * 13 12 11 15 15 C 1.39690 * 119.97248 * 0.51059 * 14 13 12 16 16 C 1.47727 * 120.02166 * 179.71956 * 15 14 13 17 17 N 1.31269 * 125.72787 * 179.70804 * 16 15 14 18 18 C 1.34123 * 108.64487 * 179.87238 * 17 16 15 19 19 C 1.34587 * 107.84436 * 0.39688 * 18 17 16 20 20 O 1.34446 * 125.73057 * 0.02705 * 16 15 14 21 21 C 1.39693 * 119.95530 * 359.74021 * 15 14 13 22 22 C 1.37672 * 119.97795 * 0.02562 * 21 15 14 23 23 C 1.40094 * 118.34538 * 0.48999 * 11 10 9 24 24 C 1.38484 * 119.41470 * 359.75199 * 23 11 10 25 25 N 1.31483 * 121.15785 * 359.97438 * 24 23 11 26 26 H 0.96995 * 120.00523 * 174.80023 * 1 2 3 27 27 H 1.08007 * 120.58467 * 359.97438 * 10 9 7 28 28 H 1.08009 * 119.99160 * 359.97438 * 13 12 11 29 29 H 1.07998 * 120.01589 * 180.27057 * 14 13 12 30 30 H 1.08000 * 126.07271 * 180.15537 * 18 17 16 31 31 H 1.08002 * 126.35613 * 179.78418 * 19 18 17 32 32 H 1.08003 * 120.00638 * 179.97438 * 21 15 14 33 33 H 1.07999 * 119.99120 * 179.97438 * 22 21 15 34 34 H 1.07998 * 120.29219 * 179.72988 * 23 11 10 35 35 H 1.08004 * 119.42429 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0465 1.4000 5 1 3.5390 1.4399 -0.7000 6 1 1.4390 2.6526 -0.7002 7 6 2.0075 -1.2128 0.0005 8 1 1.4980 -2.1305 -0.2538 9 6 3.3816 -1.2359 0.3340 10 6 4.1224 -2.4164 0.1583 11 6 5.4763 -2.4157 0.4889 12 6 6.3014 -3.6356 0.3161 13 6 5.7233 -4.8031 -0.1826 14 6 6.4895 -5.9350 -0.3480 15 6 7.8439 -5.9169 -0.0063 16 6 8.6656 -7.1326 -0.1776 17 7 9.9439 -7.2392 0.1010 18 6 10.3414 -8.4888 -0.1809 19 6 9.2771 -9.1634 -0.6535 20 8 8.2311 -8.3137 -0.6506 21 6 8.4205 -4.7488 0.4979 22 6 7.6537 -3.6167 0.6580 23 6 6.0371 -1.2353 0.9936 24 6 5.2396 -0.1131 1.1431 25 7 3.9655 -0.1359 0.8192 26 1 -0.4851 -0.8365 -0.0761 27 1 3.6518 -3.3080 -0.2293 28 1 4.6750 -4.8183 -0.4422 29 1 6.0428 -6.8375 -0.7382 30 1 11.3393 -8.8823 -0.0549 31 1 9.2638 -10.1944 -0.9751 32 1 9.4675 -4.7341 0.7628 33 1 8.0992 -2.7136 1.0482 34 1 7.0821 -1.2010 1.2641 35 1 5.6717 0.7969 1.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245624084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = 64.503012 kcal Electronic energy + Delta-G solvation = -20882.696963 eV Core-core repulsion = 17618.387977 eV Total energy + Delta-G solvation = -3264.308986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.42866 -39.50285 -38.19944 -34.96987 -34.08539 -33.20297 -31.24000 -30.72225 -30.33333 -28.35707 -25.69192 -24.29233 -23.32510 -22.29554 -21.80386 -20.86517 -20.37991 -18.39759 -18.18145 -16.77039 -16.54823 -15.82815 -15.50968 -15.10663 -14.89868 -14.15290 -14.07302 -13.73915 -13.50075 -13.38339 -13.18462 -12.87410 -12.60320 -12.37210 -12.20146 -11.59533 -11.40491 -11.37417 -10.86761 -10.77191 -10.45876 -10.27751 -9.88421 -9.80882 -9.21785 -8.97574 -8.94094 -8.09446 -7.92097 -7.68967 -7.34257 -4.85119 0.44162 1.44947 1.54488 2.38191 2.47229 2.48382 2.87457 3.52015 3.59438 3.81028 3.90204 3.96774 4.34241 4.56225 4.67427 4.75381 4.91597 4.98394 5.01473 5.38399 5.42621 5.44945 5.45251 5.64551 5.66720 5.78327 5.96465 6.01070 6.17814 6.30293 6.32282 6.39369 6.45350 6.65419 6.85575 6.92057 7.14656 7.31395 7.37946 7.50997 7.57378 7.99350 8.19860 8.54513 9.42353 9.91034 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039669 B = 0.003019 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.680152 B = 9272.789964 C = 9912.694987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.048 3.952 3 Si 1.144 2.856 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.326 1.326 7 C -0.475 4.475 8 H 0.082 0.918 9 C 0.248 3.752 10 C -0.236 4.236 11 C 0.003 3.997 12 C 0.004 3.996 13 C -0.115 4.115 14 C -0.084 4.084 15 C -0.044 4.044 16 C 0.249 3.751 17 N -0.482 5.482 18 C -0.039 4.039 19 C -0.083 4.083 20 O -0.198 6.198 21 C -0.066 4.066 22 C -0.115 4.115 23 C -0.301 4.301 24 C 0.149 3.851 25 N -0.568 5.568 26 H 0.285 0.715 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.185 0.815 31 H 0.216 0.784 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.872 -13.334 -0.974 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.174 4.174 3 Si 0.976 3.024 4 H -0.211 1.211 5 H -0.206 1.206 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.100 0.900 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.003 4.003 12 C 0.003 3.997 13 C -0.133 4.133 14 C -0.104 4.104 15 C -0.046 4.046 16 C 0.046 3.954 17 N -0.210 5.210 18 C -0.179 4.179 19 C -0.154 4.154 20 O -0.084 6.084 21 C -0.086 4.086 22 C -0.133 4.133 23 C -0.324 4.324 24 C -0.013 4.013 25 N -0.286 5.286 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.202 0.798 31 H 0.232 0.768 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.349 -10.629 -0.593 17.867 hybrid contribution 0.367 -3.569 -0.433 3.614 sum 14.716 -14.198 -1.026 20.475 Atomic orbital electron populations 1.70618 1.08308 1.33104 1.29906 1.27752 0.95181 1.06141 0.88356 0.82114 0.72571 0.69788 0.77904 1.21081 1.20647 1.25901 1.20750 0.93204 0.97014 1.39641 0.89960 1.18516 0.93403 0.86898 0.88645 1.21801 0.93201 0.99896 1.10924 1.18673 0.92965 0.91508 0.97170 1.19268 0.93072 0.93151 0.94168 1.21250 1.00624 0.91740 0.99723 1.21090 0.92044 0.98814 0.98403 1.17264 0.92117 0.88356 1.06820 1.24016 0.89188 0.85693 0.96543 1.70671 1.09441 1.19828 1.21101 1.23379 1.01101 0.90012 1.03384 1.25113 0.85502 0.97260 1.07519 1.84521 1.38642 1.20909 1.64361 1.21025 1.00317 0.90688 0.96533 1.21234 0.93194 0.98312 1.00608 1.21212 0.99968 0.94720 1.16518 1.22073 0.89660 0.96332 0.93207 1.66784 1.11922 1.28793 1.21126 0.90401 0.87284 0.84657 0.85344 0.79806 0.76766 0.84627 0.84567 0.87414 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.25 13.65 55.55 0.76 -20.49 16 2 C 0.05 1.28 5.51 -17.34 -0.10 1.18 16 3 Si 1.14 27.31 25.93 -169.99 -4.41 22.90 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.69 6.54 56.52 0.37 -6.32 16 6 H -0.33 -7.65 7.11 56.52 0.40 -7.24 16 7 C -0.47 -12.54 9.51 -37.70 -0.36 -12.89 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.25 6.26 6.27 -85.02 -0.53 5.72 16 10 C -0.24 -5.26 9.22 -38.32 -0.35 -5.61 16 11 C 0.00 0.05 5.91 -104.65 -0.62 -0.57 16 12 C 0.00 0.07 5.88 -104.83 -0.62 -0.55 16 13 C -0.12 -1.75 9.43 -39.32 -0.37 -2.12 16 14 C -0.08 -1.14 9.70 -39.24 -0.38 -1.52 16 15 C -0.04 -0.61 5.88 -104.93 -0.62 -1.23 16 16 C 0.25 3.38 7.89 -13.92 -0.11 3.27 16 17 N -0.48 -6.44 10.90 -11.74 -0.13 -6.56 16 18 C -0.04 -0.38 11.87 -17.84 -0.21 -0.60 16 19 C -0.08 -0.73 12.17 29.44 0.36 -0.37 16 20 O -0.20 -2.40 10.51 4.06 0.04 -2.35 16 21 C -0.07 -0.90 9.67 -39.25 -0.38 -1.28 16 22 C -0.12 -1.68 9.43 -39.32 -0.37 -2.05 16 23 C -0.30 -5.85 9.51 -38.79 -0.37 -6.22 16 24 C 0.15 3.14 11.17 -17.61 -0.20 2.94 16 25 N -0.57 -13.98 5.01 -11.21 -0.06 -14.04 16 26 H 0.28 7.23 8.73 -40.82 -0.36 6.87 16 27 H 0.11 2.24 6.32 -52.48 -0.33 1.91 16 28 H 0.14 1.98 6.27 -52.48 -0.33 1.65 16 29 H 0.13 1.48 7.89 -52.49 -0.41 1.07 16 30 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.14 1.67 7.82 -52.48 -0.41 1.26 16 33 H 0.14 1.78 6.26 -52.49 -0.33 1.45 16 34 H 0.11 1.75 6.31 -52.49 -0.33 1.42 16 35 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -29.89 307.61 -7.40 -37.29 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.02 Total: 0.53 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -5.22 Total: -21.91 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.57 Total: -41.10 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 27.31 SS G_CDS: -4.41 Total: 22.90 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.89 -7.40 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245624084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.796 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds