Wall clock time and date at job start Tue Mar 31 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47281 * 299.99846 * 3 2 1 6 6 H 1.48509 * 109.47115 * 59.99941 * 3 2 1 7 7 C 1.40167 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99627 * 164.31857 * 7 2 1 9 9 C 1.40820 * 120.00207 * 344.59811 * 7 2 1 10 10 C 1.41153 * 121.11412 * 334.23351 * 9 7 2 11 11 C 1.36424 * 119.11763 * 179.76845 * 10 9 7 12 12 N 1.32262 * 121.53790 * 0.52430 * 11 10 9 13 13 C 1.31613 * 122.52441 * 359.72591 * 12 11 10 14 14 C 1.39456 * 120.64146 * 0.02562 * 13 12 11 15 15 C 1.47610 * 120.79531 * 180.02562 * 14 13 12 16 16 C 1.39901 * 120.00698 * 129.69802 * 15 14 13 17 17 C 1.36544 * 119.99474 * 179.73489 * 16 15 14 18 18 C 1.39865 * 120.00706 * 0.53919 * 17 16 15 19 19 C 1.47568 * 119.99938 * 179.71406 * 18 17 16 20 20 N 1.31350 * 125.73506 * 179.71249 * 19 18 17 21 21 C 1.34011 * 108.65762 * 179.89665 * 20 19 18 22 22 C 1.34716 * 107.84992 * 0.36832 * 21 20 19 23 23 O 1.34486 * 125.72753 * 0.02562 * 19 18 17 24 24 C 1.39859 * 120.00617 * 359.73800 * 18 17 16 25 25 C 1.36551 * 120.00714 * 359.97438 * 24 18 17 26 26 H 0.96995 * 119.99613 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.44227 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.23442 * 180.25047 * 11 10 9 29 29 H 1.07995 * 119.68077 * 179.97438 * 13 12 11 30 30 H 1.08000 * 120.00159 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.00071 * 180.29566 * 17 16 15 32 32 H 1.08002 * 126.07830 * 180.14371 * 21 20 19 33 33 H 1.07999 * 126.36182 * 179.80107 * 22 21 20 34 34 H 1.07998 * 119.99499 * 179.97438 * 24 18 17 35 35 H 1.07999 * 120.00309 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8822 2.3964 1.2126 7 6 2.0078 -1.2139 0.0005 8 1 3.0576 -1.2314 -0.2523 9 6 1.3416 -2.4114 0.3250 10 6 0.1918 -2.4077 1.1437 11 6 -0.4244 -3.5911 1.4283 12 7 0.0366 -4.7404 0.9636 13 6 1.1056 -4.8170 0.1997 14 6 1.8087 -3.6665 -0.1565 15 6 3.0077 -3.7485 -1.0135 16 6 3.1204 -2.9260 -2.1396 17 6 4.2320 -2.9982 -2.9292 18 6 5.2530 -3.9023 -2.6186 19 6 6.4515 -3.9847 -3.4756 20 7 7.4757 -4.7852 -3.2873 21 6 8.3670 -4.5786 -4.2665 22 6 7.8780 -3.6175 -5.0740 23 8 6.6812 -3.2484 -4.5774 24 6 5.1380 -4.7287 -1.4962 25 6 4.0291 -4.6528 -0.7030 26 1 -0.4849 0.8400 0.0004 27 1 -0.1970 -1.4799 1.5369 28 1 -1.3066 -3.5900 2.0512 29 1 1.4421 -5.7803 -0.1541 30 1 2.3302 -2.2307 -2.3817 31 1 4.3213 -2.3600 -3.7958 32 1 9.3114 -5.0890 -4.3850 33 1 8.3563 -3.2176 -5.9559 34 1 5.9263 -5.4271 -1.2568 35 1 3.9405 -5.2907 0.1640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245624158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:14 Heat of formation + Delta-G solvation = 69.196077 kcal Electronic energy + Delta-G solvation = -21475.542206 eV Core-core repulsion = 18211.436727 eV Total energy + Delta-G solvation = -3264.105479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.14623 -39.15008 -37.85365 -34.69489 -34.35479 -32.75957 -30.83907 -30.47368 -29.86196 -27.86339 -26.16131 -23.69670 -22.96491 -21.93816 -21.36746 -21.07288 -20.11547 -17.92480 -17.68066 -16.49309 -16.02458 -15.72066 -15.37034 -14.93884 -14.60961 -14.45219 -13.91384 -13.42890 -13.16006 -13.04214 -12.78792 -12.62805 -12.49411 -12.19606 -11.60043 -11.53390 -11.32970 -11.29432 -11.03178 -10.68077 -10.45643 -10.39539 -9.91966 -9.65536 -9.43999 -8.57727 -8.33689 -8.11935 -7.93905 -7.37567 -7.01463 -4.75989 0.87960 1.91324 1.98026 2.55977 2.68362 2.78040 2.93332 2.99189 3.02114 3.13051 3.71831 4.13300 4.34025 4.47600 4.93980 4.99542 5.32470 5.40428 5.52253 5.57960 5.71718 5.78779 5.81371 5.92738 6.07440 6.18456 6.26210 6.44046 6.54043 6.69881 6.74031 6.81576 6.91507 6.93915 7.18364 7.24534 7.36678 7.43059 7.70615 7.79722 7.93047 8.27673 8.52404 8.56403 9.49268 9.84258 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.004766 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.796417 B = 5873.848244 C = 7360.641885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.148 3.852 10 C -0.207 4.207 11 C 0.083 3.917 12 N -0.578 5.578 13 C 0.137 3.863 14 C -0.249 4.249 15 C 0.058 3.942 16 C -0.107 4.107 17 C -0.084 4.084 18 C -0.069 4.069 19 C 0.260 3.740 20 N -0.490 5.490 21 C -0.038 4.038 22 C -0.094 4.094 23 O -0.199 6.199 24 C -0.062 4.062 25 C -0.138 4.138 26 H 0.286 0.714 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.182 0.818 33 H 0.213 0.787 34 H 0.128 0.872 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.674 -1.452 -6.588 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.140 3.860 10 C -0.229 4.229 11 C -0.064 4.064 12 N -0.292 5.292 13 C -0.022 4.022 14 C -0.254 4.254 15 C 0.057 3.943 16 C -0.125 4.125 17 C -0.104 4.104 18 C -0.070 4.070 19 C 0.057 3.943 20 N -0.219 5.219 21 C -0.178 4.178 22 C -0.164 4.164 23 O -0.086 6.086 24 C -0.081 4.081 25 C -0.157 4.157 26 H 0.098 0.902 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.199 0.801 33 H 0.229 0.771 34 H 0.146 0.854 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.993 -2.434 -5.856 11.004 hybrid contribution 0.952 2.161 -1.004 2.567 sum 9.945 -0.273 -6.860 12.084 Atomic orbital electron populations 1.69746 1.07825 1.30013 1.32222 1.26047 0.94767 1.01762 0.91797 0.86220 0.81273 0.80327 0.78961 1.17941 1.19566 1.19351 1.19680 0.97818 0.90421 1.38882 0.89309 1.17723 0.90021 0.91113 0.87114 1.21916 1.00090 0.98326 1.02548 1.21739 0.98041 0.88832 0.97756 1.67331 1.16051 1.29040 1.16751 1.22144 0.91180 0.95749 0.93165 1.19537 1.01385 0.95242 1.09278 1.18988 0.92279 0.91354 0.91698 1.21111 0.97755 0.99676 0.93993 1.20829 0.93070 0.96952 0.99550 1.17225 0.90444 1.03059 0.96289 1.24153 0.95738 0.88647 0.85723 1.70666 1.01878 1.23957 1.25380 1.23338 1.01289 1.00031 0.93176 1.25053 0.86071 1.02165 1.03141 1.84527 1.34256 1.53529 1.36250 1.20666 0.97832 0.97172 0.92466 1.21015 0.93428 1.00857 1.00362 0.90237 0.85621 0.86339 0.85885 0.84594 0.86086 0.80100 0.77082 0.85390 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.01 10.96 55.56 0.61 -17.40 16 2 C 0.08 1.76 5.21 -17.31 -0.09 1.67 16 3 Si 0.91 17.14 29.59 -169.99 -5.03 12.11 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.44 -10.39 7.30 -37.88 -0.28 -10.67 16 8 H 0.09 2.08 6.70 -52.49 -0.35 1.73 16 9 C 0.15 3.60 5.58 -106.25 -0.59 3.01 16 10 C -0.21 -5.00 8.71 -39.13 -0.34 -5.34 16 11 C 0.08 1.91 11.08 -18.02 -0.20 1.71 16 12 N -0.58 -13.43 10.31 -13.35 -0.14 -13.57 16 13 C 0.14 3.01 10.71 -17.19 -0.18 2.83 16 14 C -0.25 -5.58 5.53 -104.05 -0.58 -6.16 16 15 C 0.06 1.16 5.00 -104.83 -0.52 0.63 16 16 C -0.11 -2.03 8.01 -39.57 -0.32 -2.35 16 17 C -0.08 -1.43 9.65 -39.58 -0.38 -1.82 16 18 C -0.07 -1.16 5.88 -104.88 -0.62 -1.78 16 19 C 0.26 4.22 7.88 -13.95 -0.11 4.11 16 20 N -0.49 -7.71 10.89 -11.76 -0.13 -7.84 16 21 C -0.04 -0.46 11.88 -17.85 -0.21 -0.67 16 22 C -0.09 -1.03 12.18 29.48 0.36 -0.67 16 23 O -0.20 -2.91 10.51 4.02 0.04 -2.87 16 24 C -0.06 -1.03 9.63 -39.58 -0.38 -1.41 16 25 C -0.14 -2.42 9.48 -39.57 -0.38 -2.80 16 26 H 0.29 6.02 8.29 -40.82 -0.34 5.69 16 27 H 0.13 3.07 6.28 -52.48 -0.33 2.74 16 28 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.12 2.37 8.05 -52.49 -0.42 1.95 16 30 H 0.14 2.70 7.37 -52.49 -0.39 2.32 16 31 H 0.12 1.83 7.89 -52.48 -0.41 1.41 16 32 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 1.94 7.82 -52.49 -0.41 1.53 16 35 H 0.13 2.02 8.05 -52.49 -0.42 1.60 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -27.47 311.94 -7.90 -35.38 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.14 Total: 9.19 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -4.82 Total: -19.71 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.34 Total: -38.81 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.47 -7.90 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245624158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.571 kcal (2) G-P(sol) polarization free energy of solvation -27.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds