Wall clock time and date at job start Tue Mar 31 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47281 * 299.99846 * 3 2 1 6 6 H 1.48509 * 109.47115 * 59.99941 * 3 2 1 7 7 C 1.40167 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99627 * 164.31857 * 7 2 1 9 9 C 1.40820 * 120.00207 * 344.59811 * 7 2 1 10 10 C 1.41153 * 121.11412 * 334.23351 * 9 7 2 11 11 C 1.36424 * 119.11763 * 179.76845 * 10 9 7 12 12 N 1.32262 * 121.53790 * 0.52430 * 11 10 9 13 13 C 1.31613 * 122.52441 * 359.72591 * 12 11 10 14 14 C 1.39456 * 120.64146 * 0.02562 * 13 12 11 15 15 C 1.47610 * 120.79531 * 180.02562 * 14 13 12 16 16 C 1.39901 * 120.00698 * 129.69802 * 15 14 13 17 17 C 1.36544 * 119.99474 * 179.73489 * 16 15 14 18 18 C 1.39865 * 120.00706 * 0.53919 * 17 16 15 19 19 C 1.47568 * 119.99938 * 179.71406 * 18 17 16 20 20 N 1.31350 * 125.73506 * 179.71249 * 19 18 17 21 21 C 1.34011 * 108.65762 * 179.89665 * 20 19 18 22 22 C 1.34716 * 107.84992 * 0.36832 * 21 20 19 23 23 O 1.34486 * 125.72753 * 0.02562 * 19 18 17 24 24 C 1.39859 * 120.00617 * 359.73800 * 18 17 16 25 25 C 1.36551 * 120.00714 * 359.97438 * 24 18 17 26 26 H 0.96995 * 119.99613 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.44227 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.23442 * 180.25047 * 11 10 9 29 29 H 1.07995 * 119.68077 * 179.97438 * 13 12 11 30 30 H 1.08000 * 120.00159 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.00071 * 180.29566 * 17 16 15 32 32 H 1.08002 * 126.07830 * 180.14371 * 21 20 19 33 33 H 1.07999 * 126.36182 * 179.80107 * 22 21 20 34 34 H 1.07998 * 119.99499 * 179.97438 * 24 18 17 35 35 H 1.07999 * 120.00309 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8822 2.3964 1.2126 7 6 2.0078 -1.2139 0.0005 8 1 3.0576 -1.2314 -0.2523 9 6 1.3416 -2.4114 0.3250 10 6 0.1918 -2.4077 1.1437 11 6 -0.4244 -3.5911 1.4283 12 7 0.0366 -4.7404 0.9636 13 6 1.1056 -4.8170 0.1997 14 6 1.8087 -3.6665 -0.1565 15 6 3.0077 -3.7485 -1.0135 16 6 3.1204 -2.9260 -2.1396 17 6 4.2320 -2.9982 -2.9292 18 6 5.2530 -3.9023 -2.6186 19 6 6.4515 -3.9847 -3.4756 20 7 7.4757 -4.7852 -3.2873 21 6 8.3670 -4.5786 -4.2665 22 6 7.8780 -3.6175 -5.0740 23 8 6.6812 -3.2484 -4.5774 24 6 5.1380 -4.7287 -1.4962 25 6 4.0291 -4.6528 -0.7030 26 1 -0.4849 0.8400 0.0004 27 1 -0.1970 -1.4799 1.5369 28 1 -1.3066 -3.5900 2.0512 29 1 1.4421 -5.7803 -0.1541 30 1 2.3302 -2.2307 -2.3817 31 1 4.3213 -2.3600 -3.7958 32 1 9.3114 -5.0890 -4.3850 33 1 8.3563 -3.2176 -5.9559 34 1 5.9263 -5.4271 -1.2568 35 1 3.9405 -5.2907 0.1640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245624158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:14 Heat of formation + Delta-G solvation = 53.656852 kcal Electronic energy + Delta-G solvation = -21476.216038 eV Core-core repulsion = 18211.436727 eV Total energy + Delta-G solvation = -3264.779311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.19397 -40.71654 -39.42326 -36.10021 -35.77024 -34.21796 -32.39543 -31.92966 -31.31760 -29.23690 -27.87851 -25.10479 -24.19925 -23.43012 -22.78811 -22.44414 -21.56845 -19.53164 -18.93905 -17.57614 -17.54025 -17.21304 -16.63780 -16.44097 -16.18038 -15.90363 -15.21944 -14.93145 -14.50024 -14.36417 -14.27349 -14.10255 -14.01674 -13.70928 -13.26495 -13.08306 -12.86414 -12.66402 -12.40268 -12.03734 -11.97525 -11.68302 -11.53414 -11.30525 -10.71894 -10.00254 -9.89457 -9.86843 -9.60284 -8.90795 -8.66542 -6.55036 -0.39365 0.58112 0.65949 0.96930 1.10932 1.37665 1.50786 1.52883 1.76367 1.84422 2.14623 2.73030 2.93783 3.08156 3.68281 3.95304 3.97618 4.05716 4.13874 4.18065 4.22584 4.48040 4.55934 4.62816 4.72027 4.93254 4.96314 4.97732 5.02563 5.14250 5.25019 5.26558 5.38146 5.48942 5.51429 5.57176 5.78498 5.92059 6.04081 6.17287 6.49733 6.74202 6.75509 6.78742 7.70867 8.17182 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.004766 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.796417 B = 5873.848244 C = 7360.641885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.044 3.956 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.121 3.879 10 C -0.229 4.229 11 C 0.079 3.921 12 N -0.590 5.590 13 C 0.127 3.873 14 C -0.248 4.248 15 C 0.028 3.972 16 C -0.112 4.112 17 C -0.084 4.084 18 C -0.058 4.058 19 C 0.223 3.777 20 N -0.503 5.503 21 C -0.058 4.058 22 C -0.069 4.069 23 O -0.210 6.210 24 C -0.063 4.063 25 C -0.129 4.129 26 H 0.295 0.705 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.216 0.784 33 H 0.262 0.738 34 H 0.144 0.856 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -1.401 -8.168 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.175 4.175 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.113 3.887 10 C -0.251 4.251 11 C -0.069 4.069 12 N -0.305 5.305 13 C -0.031 4.031 14 C -0.254 4.254 15 C 0.027 3.973 16 C -0.130 4.130 17 C -0.104 4.104 18 C -0.060 4.060 19 C 0.021 3.979 20 N -0.233 5.233 21 C -0.197 4.197 22 C -0.139 4.139 23 O -0.096 6.096 24 C -0.082 4.082 25 C -0.147 4.147 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.233 0.767 33 H 0.278 0.722 34 H 0.161 0.839 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.564 -2.398 -7.447 13.962 hybrid contribution 0.361 2.055 -0.692 2.198 sum 11.925 -0.343 -8.139 14.442 Atomic orbital electron populations 1.69778 1.09023 1.31286 1.32594 1.26763 0.95380 1.04372 0.90965 0.85248 0.79546 0.76405 0.79299 1.18329 1.18685 1.18674 1.19762 0.97666 0.91175 1.39993 0.89806 1.18093 0.90592 0.92356 0.87650 1.21915 1.01054 0.98410 1.03763 1.22049 0.98567 0.88485 0.97772 1.67392 1.16652 1.29006 1.17425 1.22560 0.90813 0.96824 0.92920 1.19802 1.02066 0.94706 1.08800 1.18948 0.92546 0.93442 0.92367 1.20963 0.98116 0.99448 0.94501 1.20908 0.92413 0.97325 0.99731 1.17389 0.90584 1.01920 0.96061 1.23889 0.96206 0.90656 0.87149 1.70615 1.02312 1.23708 1.26635 1.23990 1.02158 1.00974 0.92583 1.26120 0.84135 1.00400 1.03209 1.84529 1.35825 1.53449 1.35825 1.20799 0.97746 0.97398 0.92217 1.21088 0.92966 1.00002 1.00692 0.89408 0.86638 0.84192 0.83372 0.86417 0.84422 0.76725 0.72210 0.83860 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.29 10.96 21.86 0.24 -38.05 16 2 C 0.04 2.03 5.21 85.33 0.44 2.48 16 3 Si 0.97 35.34 29.59 68.60 2.03 37.37 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.46 -22.38 7.30 23.37 0.17 -22.21 16 8 H 0.08 4.07 6.70 -2.91 -0.02 4.05 16 9 C 0.12 6.10 5.58 -20.92 -0.12 5.98 16 10 C -0.23 -11.51 8.71 22.56 0.20 -11.31 16 11 C 0.08 3.69 11.08 84.20 0.93 4.62 16 12 N -0.59 -27.73 10.31 -196.13 -2.02 -29.75 16 13 C 0.13 5.63 10.71 85.02 0.91 6.54 16 14 C -0.25 -11.44 5.53 -19.50 -0.11 -11.55 16 15 C 0.03 1.15 5.00 -20.00 -0.10 1.05 16 16 C -0.11 -4.34 8.01 22.28 0.18 -4.16 16 17 C -0.08 -2.84 9.65 22.27 0.21 -2.62 16 18 C -0.06 -1.91 5.88 -20.03 -0.12 -2.03 16 19 C 0.22 6.82 7.88 87.23 0.69 7.51 16 20 N -0.50 -14.59 10.89 -305.08 -3.32 -17.91 16 21 C -0.06 -1.17 11.88 83.55 0.99 -0.18 16 22 C -0.07 -1.22 12.18 67.01 0.82 -0.41 16 23 O -0.21 -5.58 10.51 -8.51 -0.09 -5.66 16 24 C -0.06 -2.00 9.63 22.27 0.21 -1.79 16 25 C -0.13 -4.47 9.48 22.28 0.21 -4.26 16 26 H 0.29 12.61 8.29 -92.71 -0.77 11.84 16 27 H 0.12 5.92 6.28 -2.91 -0.02 5.90 16 28 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 29 H 0.15 5.65 8.05 -2.91 -0.02 5.63 16 30 H 0.12 4.92 7.37 -2.91 -0.02 4.90 16 31 H 0.14 4.05 7.89 -2.91 -0.02 4.03 16 32 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.26 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.14 4.12 7.82 -2.91 -0.02 4.09 16 35 H 0.14 4.33 8.05 -2.91 -0.02 4.31 16 Total: -1.00 -60.75 311.94 3.49 -57.26 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 1.13 Total: 29.08 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 5.53 Total: -32.33 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -5.11 Total: -85.71 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.09 Total: -5.66 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -60.75 3.49 -57.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245624158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.912 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds