Wall clock time and date at job start Tue Mar 31 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48504 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46768 * 299.99832 * 3 2 1 6 6 H 1.48496 * 109.46966 * 59.99808 * 3 2 1 7 7 C 1.38679 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00067 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.35645 * 117.00552 * 185.05523 * 9 7 2 11 11 C 1.39068 * 119.92814 * 354.45446 * 10 9 7 12 12 C 1.37752 * 120.06523 * 180.23578 * 11 10 9 13 13 C 1.39622 * 119.93184 * 359.50572 * 12 11 10 14 14 C 1.47959 * 120.06569 * 180.25850 * 13 12 11 15 15 C 1.39080 * 121.16342 * 130.23390 * 14 13 12 16 16 C 1.38874 * 119.70678 * 179.97438 * 15 14 13 17 17 N 1.31366 * 121.93764 * 0.02562 * 16 15 14 18 18 C 1.33357 * 121.59988 * 359.97438 * 17 16 15 19 19 C 1.40791 * 121.92120 * 179.97438 * 18 17 16 20 20 C 1.36161 * 118.77238 * 180.02562 * 19 18 17 21 21 N 1.32551 * 121.92763 * 359.97438 * 20 19 18 22 22 C 1.31412 * 122.58759 * 0.02562 * 21 20 19 23 23 C 1.39943 * 119.87946 * 359.74003 * 22 21 20 24 24 C 1.39632 * 119.86829 * 0.49166 * 13 12 11 25 25 C 1.37752 * 119.92816 * 359.74492 * 24 13 12 26 26 H 0.97000 * 119.99922 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.96761 * 359.95029 * 11 10 9 28 28 H 1.08004 * 120.03278 * 179.72305 * 12 11 10 29 29 H 1.07994 * 120.14905 * 359.97438 * 15 14 13 30 30 H 1.07994 * 119.03259 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.61324 * 359.97438 * 19 18 17 32 32 H 1.07995 * 119.03929 * 179.97438 * 20 19 18 33 33 H 1.07994 * 120.05971 * 180.02562 * 22 21 20 34 34 H 1.07994 * 120.03141 * 179.72507 * 24 13 12 35 35 H 1.08002 * 119.96298 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0087 -1.2010 0.0005 8 1 3.0888 -1.2011 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0694 -3.5037 0.1086 11 6 3.4583 -3.4352 0.0944 12 6 4.2071 -4.5868 0.1980 13 6 3.5703 -5.8226 0.3276 14 6 4.3718 -7.0608 0.4448 15 6 4.1234 -7.9861 1.4530 16 6 4.8940 -9.1386 1.5344 17 7 5.8620 -9.3890 0.6824 18 6 6.1557 -8.5466 -0.3089 19 6 7.1919 -8.8079 -1.2255 20 6 7.4370 -7.9030 -2.2130 21 7 6.7294 -6.7887 -2.3342 22 6 5.7488 -6.4805 -1.5155 23 6 5.4150 -7.3482 -0.4696 24 6 2.1756 -5.8881 0.3415 25 6 1.4322 -4.7335 0.2327 26 1 -0.4850 0.8401 -0.0004 27 1 3.9503 -2.4787 -0.0025 28 1 5.2857 -4.5335 0.1824 29 1 3.3349 -7.8092 2.1694 30 1 4.6921 -9.8495 2.3219 31 1 7.7820 -9.7089 -1.1463 32 1 8.2311 -8.0989 -2.9182 33 1 5.1986 -5.5613 -1.6524 34 1 1.6803 -6.8430 0.4372 35 1 0.3534 -4.7835 0.2438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250503572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:04 Heat of formation + Delta-G solvation = 44.589357 kcal Electronic energy + Delta-G solvation = -21303.394972 eV Core-core repulsion = 18038.222465 eV Total energy + Delta-G solvation = -3265.172507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.23066 -40.77536 -39.06249 -38.34531 -34.99352 -34.16454 -32.63138 -32.11826 -31.44375 -29.87597 -27.46849 -25.95572 -25.14891 -23.93750 -23.50453 -22.04976 -19.99774 -19.56785 -19.03361 -18.16539 -18.09391 -16.54309 -16.43688 -16.16323 -15.82679 -15.73342 -15.61076 -15.45264 -15.20452 -14.89593 -14.49956 -14.16671 -14.02412 -13.79282 -13.59101 -13.15566 -12.95926 -12.71013 -12.62990 -12.40026 -12.10830 -11.57139 -11.22732 -10.86914 -10.82425 -10.43201 -10.33844 -9.91497 -9.58687 -8.84711 -8.51525 -6.18511 -0.90135 -0.27965 0.33700 0.51496 0.97518 1.36325 1.43521 1.53762 2.02324 2.15313 2.72074 3.03736 3.10220 3.20729 3.31346 3.42980 3.48117 3.64679 3.75992 3.81424 4.01158 4.10181 4.31961 4.40370 4.44925 4.52857 4.64377 4.66904 4.76926 4.89495 4.94465 5.05180 5.12030 5.21016 5.37624 5.50398 5.60604 5.61759 5.67076 5.97591 6.03824 6.79950 6.88523 6.93382 7.70080 8.70884 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.003565 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.676866 B = 7851.671035 C = 8620.249210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.018 4.018 3 Si 1.016 2.984 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.221 6.221 10 C 0.130 3.870 11 C -0.239 4.239 12 C -0.045 4.045 13 C -0.152 4.152 14 C 0.060 3.940 15 C -0.179 4.179 16 C 0.162 3.838 17 N -0.509 5.509 18 C 0.142 3.858 19 C -0.150 4.150 20 C 0.085 3.915 21 N -0.513 5.513 22 C 0.152 3.848 23 C -0.175 4.175 24 C -0.034 4.034 25 C -0.198 4.198 26 H 0.274 0.726 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.167 0.833 30 H 0.202 0.798 31 H 0.166 0.834 32 H 0.189 0.811 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.636 -16.228 1.759 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.491 4.491 8 H 0.123 0.877 9 O -0.126 6.126 10 C 0.078 3.922 11 C -0.258 4.258 12 C -0.063 4.063 13 C -0.153 4.153 14 C 0.050 3.950 15 C -0.198 4.198 16 C -0.009 4.009 17 N -0.218 5.218 18 C 0.015 3.985 19 C -0.170 4.170 20 C -0.059 4.059 21 N -0.221 5.221 22 C -0.020 4.020 23 C -0.179 4.179 24 C -0.052 4.052 25 C -0.217 4.217 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.184 0.816 30 H 0.219 0.781 31 H 0.184 0.816 32 H 0.206 0.794 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.118 -16.329 0.989 20.358 hybrid contribution -0.758 1.328 0.502 1.610 sum 11.360 -15.001 1.492 18.875 Atomic orbital electron populations 1.70164 1.08003 1.28963 1.48008 1.26559 0.96795 1.02686 0.95590 0.84556 0.78347 0.74943 0.78589 1.17442 1.19395 1.19322 1.21907 0.92671 0.81230 1.53279 0.87731 1.83915 1.36098 1.12688 1.79897 1.20069 0.91388 0.88039 0.92664 1.21150 0.93069 0.99817 1.11751 1.21000 0.99302 0.90683 0.95316 1.18299 0.92938 0.91266 1.12796 1.19163 0.91020 0.92700 0.92078 1.22625 1.03024 0.94896 0.99295 1.23624 0.87534 0.94763 0.95004 1.68056 1.18490 1.30880 1.04373 1.19194 0.95026 0.89988 0.94265 1.21965 0.97719 1.02527 0.94819 1.22797 0.97838 0.88397 0.96863 1.67638 1.06948 1.20175 1.27389 1.23380 0.92179 0.97861 0.88550 1.19871 0.99986 0.98331 0.99717 1.21001 0.91827 0.97499 0.94853 1.20397 1.00389 0.89992 1.10959 0.91652 0.85740 0.85087 0.81562 0.78122 0.81637 0.79404 0.82054 0.82749 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.10 13.67 21.62 0.30 -53.80 16 2 C -0.02 -0.96 5.49 84.84 0.47 -0.50 16 3 Si 1.02 41.32 29.55 68.60 2.03 43.35 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.42 -23.06 9.48 67.93 0.64 -22.42 16 8 H 0.11 5.32 5.19 -2.91 -0.02 5.30 16 9 O -0.22 -12.56 9.75 -21.29 -0.21 -12.77 16 10 C 0.13 6.02 6.65 22.67 0.15 6.17 16 11 C -0.24 -9.69 9.15 22.35 0.20 -9.48 16 12 C -0.04 -1.47 7.72 22.49 0.17 -1.29 16 13 C -0.15 -4.51 5.14 -20.03 -0.10 -4.61 16 14 C 0.06 1.55 5.52 -19.65 -0.11 1.44 16 15 C -0.18 -3.51 9.62 22.62 0.22 -3.29 16 16 C 0.16 2.90 11.13 84.91 0.94 3.84 16 17 N -0.51 -11.88 10.35 -188.79 -1.95 -13.83 16 18 C 0.14 3.61 6.63 40.42 0.27 3.88 16 19 C -0.15 -3.19 10.08 22.41 0.23 -2.96 16 20 C 0.09 1.82 11.06 84.10 0.93 2.75 16 21 N -0.51 -14.00 10.31 -195.88 -2.02 -16.02 16 22 C 0.15 4.27 9.94 85.17 0.85 5.12 16 23 C -0.17 -4.74 5.74 -21.14 -0.12 -4.86 16 24 C -0.03 -1.01 9.55 22.49 0.21 -0.80 16 25 C -0.20 -7.61 9.98 22.35 0.22 -7.39 16 26 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.12 5.17 5.62 -2.91 -0.02 5.15 16 28 H 0.13 3.77 7.30 -2.91 -0.02 3.75 16 29 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.16 4.65 5.77 -2.91 -0.02 4.64 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -69.88 308.36 4.46 -65.43 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.14 Total: 22.05 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 5.18 Total: -34.41 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.68 Total: -83.65 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.21 Total: -12.77 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -69.88 4.46 -65.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250503572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.015 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds