Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86800 * 119.99423 * 2 1 4 4 H 1.48504 * 109.47034 * 239.99689 * 3 2 1 5 5 H 1.48498 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47189 * 119.99899 * 3 2 1 7 7 C 1.38669 * 120.00550 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.35607 * 116.99600 * 185.06168 * 9 7 2 11 11 C 1.38770 * 120.15110 * 354.39782 * 10 9 7 12 12 C 1.38082 * 120.06202 * 179.97438 * 11 10 9 13 13 C 1.38507 * 120.36987 * 0.02562 * 12 11 10 14 14 C 1.37923 * 120.29961 * 359.97438 * 13 12 11 15 15 C 1.39495 * 119.92429 * 0.02562 * 14 13 12 16 16 C 1.47911 * 120.17738 * 180.02562 * 15 14 13 17 17 C 1.39092 * 121.16980 * 64.99935 * 16 15 14 18 18 C 1.38866 * 119.70285 * 179.97438 * 17 16 15 19 19 N 1.31360 * 121.94386 * 359.97438 * 18 17 16 20 20 C 1.33360 * 121.60482 * 359.97438 * 19 18 17 21 21 C 1.40794 * 121.92827 * 180.02562 * 20 19 18 22 22 C 1.36169 * 118.76582 * 179.21438 * 21 20 19 23 23 N 1.32555 * 121.93218 * 0.77999 * 22 21 20 24 24 C 1.31405 * 122.57921 * 359.47595 * 23 22 21 25 25 C 1.39942 * 119.88510 * 359.97438 * 24 23 22 26 26 H 0.96998 * 120.00347 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.96708 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.81520 * 180.27705 * 12 11 10 29 29 H 1.07999 * 119.85756 * 179.97438 * 13 12 11 30 30 H 1.07995 * 120.04035 * 179.97438 * 14 13 12 31 31 H 1.07999 * 120.15073 * 359.95032 * 17 16 15 32 32 H 1.08004 * 119.02433 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.61574 * 359.96167 * 21 20 19 34 34 H 1.08003 * 119.03501 * 180.27668 * 22 21 20 35 35 H 1.08002 * 120.06064 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0695 -3.5032 0.1077 11 6 3.4557 -3.4401 0.0941 12 6 4.2019 -4.5967 0.2039 13 6 3.5748 -5.8255 0.3275 14 6 2.1980 -5.9057 0.3426 15 6 1.4320 -4.7451 0.2326 16 6 -0.0448 -4.8246 0.2488 17 6 -0.7302 -5.2573 1.3792 18 6 -2.1173 -5.3197 1.3610 19 7 -2.8145 -4.9797 0.3009 20 6 -2.2242 -4.5550 -0.8170 21 6 -2.9648 -4.1884 -1.9570 22 6 -2.2966 -3.7481 -3.0588 23 7 -0.9738 -3.6703 -3.0920 24 6 -0.2196 -4.0005 -2.0678 25 6 -0.8115 -4.4547 -0.8838 26 1 -0.4850 0.8400 -0.0004 27 1 3.9513 -2.4853 -0.0023 28 1 5.2805 -4.5425 0.1974 29 1 4.1665 -6.7250 0.4124 30 1 1.7134 -6.8661 0.4388 31 1 -0.1859 -5.5439 2.2669 32 1 -2.6383 -5.6577 2.2447 33 1 -4.0434 -4.2437 -1.9535 34 1 -2.8606 -3.4615 -3.9341 35 1 0.8551 -3.9216 -2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250504847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = 65.685912 kcal Electronic energy + Delta-G solvation = -22472.747624 eV Core-core repulsion = 19208.489932 eV Total energy + Delta-G solvation = -3264.257692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73884 -39.12428 -37.50501 -36.54273 -33.74234 -32.41281 -31.18788 -30.37359 -29.38695 -28.74223 -25.52494 -24.55863 -23.67934 -22.75974 -21.57015 -20.56177 -18.30037 -18.12439 -17.30427 -16.77291 -16.36204 -15.08405 -14.80490 -14.64416 -14.29568 -14.24194 -14.09774 -13.89013 -13.67220 -13.62407 -12.83947 -12.61467 -12.46853 -12.27872 -11.80742 -11.68521 -11.40971 -11.01477 -10.98126 -10.94340 -10.56641 -9.96833 -9.60912 -9.37989 -8.99213 -8.94272 -8.83970 -8.36920 -7.91607 -7.38021 -6.56999 -4.16884 0.62494 1.19819 1.82238 2.18446 2.39180 3.06405 3.07337 3.10639 3.45644 3.85465 4.31231 4.49847 4.59087 4.79199 4.90877 4.92720 5.04612 5.13891 5.21856 5.27059 5.49878 5.56732 5.63511 5.78470 5.84268 6.01651 6.02029 6.11549 6.23898 6.28773 6.48910 6.53614 6.62579 6.83526 6.90904 7.01185 7.10380 7.17723 7.22721 7.59350 7.83975 8.20030 8.40296 8.86638 9.50397 10.58627 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.007540 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.454738 B = 3712.604300 C = 5037.724324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.046 3.954 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.398 4.398 8 H 0.094 0.906 9 O -0.159 6.159 10 C 0.167 3.833 11 C -0.232 4.232 12 C -0.060 4.060 13 C -0.216 4.216 14 C -0.047 4.047 15 C -0.163 4.163 16 C 0.094 3.906 17 C -0.193 4.193 18 C 0.152 3.848 19 N -0.496 5.496 20 C 0.164 3.836 21 C -0.160 4.160 22 C 0.094 3.906 23 N -0.499 5.499 24 C 0.198 3.802 25 C -0.147 4.147 26 H 0.272 0.728 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -8.918 0.345 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.161 4.161 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.474 4.474 8 H 0.112 0.888 9 O -0.061 6.061 10 C 0.111 3.889 11 C -0.251 4.251 12 C -0.079 4.079 13 C -0.235 4.235 14 C -0.065 4.065 15 C -0.165 4.165 16 C 0.084 3.916 17 C -0.213 4.213 18 C -0.019 4.019 19 N -0.205 5.205 20 C 0.037 3.963 21 C -0.181 4.181 22 C -0.051 4.051 23 N -0.207 5.207 24 C 0.026 3.974 25 C -0.151 4.151 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.515 -8.363 -0.613 8.402 hybrid contribution 1.051 0.781 0.964 1.626 sum 0.535 -7.582 0.351 7.609 Atomic orbital electron populations 1.70027 1.05994 1.28099 1.44032 1.25305 0.95802 0.98898 0.96089 0.85794 0.78806 0.79678 0.79302 1.19296 1.20191 1.19394 1.21312 0.91859 0.80553 1.53642 0.88841 1.83973 1.34289 1.11368 1.76463 1.19291 0.90148 0.87180 0.92261 1.21134 0.93305 0.99348 1.11322 1.20889 0.98749 0.92275 0.95971 1.20517 0.93976 0.97183 1.11843 1.20674 0.93483 0.95626 0.96750 1.17645 0.89943 0.91893 1.17011 1.18995 0.92530 0.88861 0.91230 1.22184 0.95295 1.04934 0.98852 1.22824 0.91160 0.92197 0.95741 1.67902 1.39664 1.13440 0.99539 1.18785 0.89671 0.94928 0.92892 1.21544 1.00982 1.02956 0.92595 1.22171 0.90362 0.95108 0.97443 1.67566 1.06665 1.15699 1.30780 1.23044 1.00054 0.87768 0.86486 1.19729 0.94585 1.03850 0.96920 0.91752 0.85068 0.87149 0.87145 0.86710 0.84507 0.82565 0.84387 0.83032 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.35 13.67 55.48 0.76 -23.60 16 2 C 0.05 1.21 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 20.01 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.40 -10.53 9.49 30.89 0.29 -10.23 16 8 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 9 O -0.16 -4.21 8.38 0.55 0.00 -4.21 16 10 C 0.17 3.72 5.58 -38.67 -0.22 3.50 16 11 C -0.23 -4.61 9.16 -39.44 -0.36 -4.97 16 12 C -0.06 -1.00 10.03 -39.54 -0.40 -1.40 16 13 C -0.22 -3.36 10.03 -39.60 -0.40 -3.76 16 14 C -0.05 -0.77 9.75 -39.23 -0.38 -1.16 16 15 C -0.16 -3.20 4.63 -104.75 -0.49 -3.68 16 16 C 0.09 1.85 4.98 -104.31 -0.52 1.33 16 17 C -0.19 -3.25 9.83 -39.03 -0.38 -3.64 16 18 C 0.15 2.45 11.13 -17.52 -0.19 2.26 16 19 N -0.50 -9.26 10.35 -11.02 -0.11 -9.38 16 20 C 0.16 3.27 6.63 -84.88 -0.56 2.71 16 21 C -0.16 -2.83 10.08 -39.36 -0.40 -3.23 16 22 C 0.09 1.65 11.06 -17.98 -0.20 1.45 16 23 N -0.50 -10.19 10.32 -13.26 -0.14 -10.33 16 24 C 0.20 4.21 9.92 -17.10 -0.17 4.04 16 25 C -0.15 -3.06 5.57 -106.59 -0.59 -3.66 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 28 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 34 H 0.15 2.07 8.06 -52.48 -0.42 1.65 16 35 H 0.16 3.40 6.56 -52.49 -0.34 3.06 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -31.19 309.06 -7.92 -39.12 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.01 Total: 8.08 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -5.06 Total: -19.33 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.51 Total: -43.30 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.00 Total: -4.21 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.19 -7.92 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250504847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.802 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds