Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86800 * 119.99423 * 2 1 4 4 H 1.48504 * 109.47034 * 239.99689 * 3 2 1 5 5 H 1.48498 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47189 * 119.99899 * 3 2 1 7 7 C 1.38669 * 120.00550 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.35607 * 116.99600 * 185.06168 * 9 7 2 11 11 C 1.38770 * 120.15110 * 354.39782 * 10 9 7 12 12 C 1.38082 * 120.06202 * 179.97438 * 11 10 9 13 13 C 1.38507 * 120.36987 * 0.02562 * 12 11 10 14 14 C 1.37923 * 120.29961 * 359.97438 * 13 12 11 15 15 C 1.39495 * 119.92429 * 0.02562 * 14 13 12 16 16 C 1.47911 * 120.17738 * 180.02562 * 15 14 13 17 17 C 1.39092 * 121.16980 * 64.99935 * 16 15 14 18 18 C 1.38866 * 119.70285 * 179.97438 * 17 16 15 19 19 N 1.31360 * 121.94386 * 359.97438 * 18 17 16 20 20 C 1.33360 * 121.60482 * 359.97438 * 19 18 17 21 21 C 1.40794 * 121.92827 * 180.02562 * 20 19 18 22 22 C 1.36169 * 118.76582 * 179.21438 * 21 20 19 23 23 N 1.32555 * 121.93218 * 0.77999 * 22 21 20 24 24 C 1.31405 * 122.57921 * 359.47595 * 23 22 21 25 25 C 1.39942 * 119.88510 * 359.97438 * 24 23 22 26 26 H 0.96998 * 120.00347 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.96708 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.81520 * 180.27705 * 12 11 10 29 29 H 1.07999 * 119.85756 * 179.97438 * 13 12 11 30 30 H 1.07995 * 120.04035 * 179.97438 * 14 13 12 31 31 H 1.07999 * 120.15073 * 359.95032 * 17 16 15 32 32 H 1.08004 * 119.02433 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.61574 * 359.96167 * 21 20 19 34 34 H 1.08003 * 119.03501 * 180.27668 * 22 21 20 35 35 H 1.08002 * 120.06064 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0695 -3.5032 0.1077 11 6 3.4557 -3.4401 0.0941 12 6 4.2019 -4.5967 0.2039 13 6 3.5748 -5.8255 0.3275 14 6 2.1980 -5.9057 0.3426 15 6 1.4320 -4.7451 0.2326 16 6 -0.0448 -4.8246 0.2488 17 6 -0.7302 -5.2573 1.3792 18 6 -2.1173 -5.3197 1.3610 19 7 -2.8145 -4.9797 0.3009 20 6 -2.2242 -4.5550 -0.8170 21 6 -2.9648 -4.1884 -1.9570 22 6 -2.2966 -3.7481 -3.0588 23 7 -0.9738 -3.6703 -3.0920 24 6 -0.2196 -4.0005 -2.0678 25 6 -0.8115 -4.4547 -0.8838 26 1 -0.4850 0.8400 -0.0004 27 1 3.9513 -2.4853 -0.0023 28 1 5.2805 -4.5425 0.1974 29 1 4.1665 -6.7250 0.4124 30 1 1.7134 -6.8661 0.4388 31 1 -0.1859 -5.5439 2.2669 32 1 -2.6383 -5.6577 2.2447 33 1 -4.0434 -4.2437 -1.9535 34 1 -2.8606 -3.4615 -3.9341 35 1 0.8551 -3.9216 -2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250504847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = 46.483755 kcal Electronic energy + Delta-G solvation = -22473.580292 eV Core-core repulsion = 19208.489932 eV Total energy + Delta-G solvation = -3265.090360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17064 -40.69228 -38.93961 -38.11398 -35.16631 -34.28892 -32.61142 -31.80836 -30.82405 -30.24619 -27.38450 -25.98513 -25.09535 -24.22355 -23.13193 -22.00567 -19.86685 -19.68702 -18.87540 -18.20218 -17.89124 -16.59263 -16.40945 -16.19778 -15.77419 -15.67016 -15.58723 -15.37094 -15.19808 -15.04186 -14.44054 -14.09851 -13.85076 -13.74027 -13.57198 -13.13094 -12.90594 -12.55236 -12.47750 -12.37824 -12.20601 -11.44380 -11.25834 -10.84710 -10.82345 -10.42927 -10.27783 -9.79667 -9.35048 -8.94732 -8.48444 -6.15478 -0.81173 -0.21738 0.38076 0.71290 0.93800 1.31776 1.41831 1.46665 2.05238 2.13610 2.79342 3.04030 3.13186 3.23657 3.37859 3.45400 3.50874 3.70354 3.86024 3.88558 4.18197 4.25260 4.31274 4.42823 4.48167 4.61247 4.67068 4.69129 4.80647 4.89144 5.03179 5.09652 5.15473 5.23018 5.44788 5.59574 5.64192 5.71686 5.74225 5.97068 6.17939 6.80769 6.91899 6.96173 7.74593 8.72096 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.007540 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.454738 B = 3712.604300 C = 5037.724324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.015 4.015 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.209 6.209 10 C 0.135 3.865 11 C -0.248 4.248 12 C -0.058 4.058 13 C -0.190 4.190 14 C -0.047 4.047 15 C -0.163 4.163 16 C 0.064 3.936 17 C -0.184 4.184 18 C 0.156 3.844 19 N -0.507 5.507 20 C 0.138 3.862 21 C -0.157 4.157 22 C 0.083 3.917 23 N -0.519 5.519 24 C 0.176 3.824 25 C -0.167 4.167 26 H 0.269 0.731 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.206 0.794 33 H 0.168 0.832 34 H 0.191 0.809 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -11.295 1.461 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.214 4.214 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.488 4.488 8 H 0.120 0.880 9 O -0.114 6.114 10 C 0.083 3.917 11 C -0.268 4.268 12 C -0.076 4.076 13 C -0.208 4.208 14 C -0.065 4.065 15 C -0.164 4.164 16 C 0.053 3.947 17 C -0.204 4.204 18 C -0.015 4.015 19 N -0.217 5.217 20 C 0.012 3.988 21 C -0.177 4.177 22 C -0.061 4.061 23 N -0.227 5.227 24 C 0.005 3.995 25 C -0.171 4.171 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.165 0.835 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.185 0.815 32 H 0.222 0.778 33 H 0.185 0.815 34 H 0.207 0.793 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.559 -10.801 0.502 10.827 hybrid contribution 0.829 1.107 0.681 1.542 sum 1.388 -9.693 1.183 9.863 Atomic orbital electron populations 1.70191 1.07937 1.28486 1.48211 1.26438 0.96612 1.02478 0.95881 0.84774 0.77502 0.74867 0.79950 1.18286 1.20168 1.17983 1.21746 0.92482 0.81419 1.53177 0.87967 1.83964 1.35345 1.12103 1.79943 1.19846 0.91324 0.87229 0.93321 1.21286 0.92788 1.00566 1.12113 1.21309 1.00513 0.91380 0.94389 1.21107 0.93879 0.98287 1.07509 1.21128 0.94074 0.95772 0.95565 1.17983 0.90530 0.91947 1.15956 1.19257 0.92869 0.90431 0.92107 1.22593 0.95949 1.03173 0.98676 1.23633 0.91207 0.90347 0.96355 1.67993 1.39927 1.13954 0.99806 1.19186 0.89644 0.95742 0.94223 1.21926 1.02381 1.01561 0.91807 1.22773 0.89515 0.94814 0.99005 1.67518 1.08239 1.15989 1.30991 1.22845 0.99552 0.89543 0.87554 1.19897 0.95499 1.04454 0.97223 0.92250 0.86083 0.83513 0.82678 0.83467 0.81530 0.77773 0.81455 0.79260 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.73 13.67 21.62 0.30 -55.44 16 2 C -0.02 -0.86 5.49 84.84 0.47 -0.39 16 3 Si 1.01 42.72 29.55 68.60 2.03 44.75 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.41 -23.07 9.49 67.92 0.64 -22.42 16 8 H 0.10 5.22 5.21 -2.91 -0.02 5.21 16 9 O -0.21 -11.72 8.38 -20.96 -0.18 -11.90 16 10 C 0.13 6.19 5.58 22.86 0.13 6.32 16 11 C -0.25 -9.91 9.16 22.36 0.20 -9.71 16 12 C -0.06 -1.75 10.03 22.30 0.22 -1.52 16 13 C -0.19 -5.04 10.03 22.26 0.22 -4.81 16 14 C -0.05 -1.41 9.75 22.50 0.22 -1.20 16 15 C -0.16 -6.34 4.63 -19.95 -0.09 -6.44 16 16 C 0.06 2.51 4.98 -19.66 -0.10 2.42 16 17 C -0.18 -5.91 9.83 22.63 0.22 -5.69 16 18 C 0.16 4.67 11.13 84.91 0.94 5.62 16 19 N -0.51 -18.37 10.35 -188.79 -1.95 -20.32 16 20 C 0.14 5.56 6.63 40.41 0.27 5.82 16 21 C -0.16 -5.51 10.08 22.41 0.23 -5.29 16 22 C 0.08 2.96 11.06 84.10 0.93 3.89 16 23 N -0.52 -22.17 10.32 -195.86 -2.02 -24.19 16 24 C 0.18 7.95 9.92 85.17 0.84 8.80 16 25 C -0.17 -7.19 5.57 -21.14 -0.12 -7.31 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.12 4.96 5.64 -2.91 -0.02 4.95 16 28 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 29 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.21 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 34 H 0.19 5.00 8.06 -2.91 -0.02 4.97 16 35 H 0.14 6.61 6.56 -2.91 -0.02 6.59 16 Total: -1.00 -74.62 309.06 4.55 -70.08 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 1.14 Total: 28.95 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 5.24 Total: -31.92 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.68 Total: -99.96 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.18 Total: -11.90 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.62 4.55 -70.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250504847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.560 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds