Wall clock time and date at job start Tue Mar 31 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48512 * 109.47087 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00007 * 3 2 1 6 6 H 1.48499 * 109.47535 * 150.00255 * 3 2 1 7 7 C 1.40087 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 190.32873 * 7 2 1 9 9 C 1.40627 * 120.00216 * 10.32521 * 7 2 1 10 10 C 1.40917 * 120.63208 * 30.98402 * 9 7 2 11 11 C 1.36247 * 119.96277 * 180.32369 * 10 9 7 12 12 C 1.38908 * 121.37668 * 359.66741 * 11 10 9 13 13 C 1.37733 * 121.32653 * 0.02562 * 12 11 10 14 14 C 1.39763 * 119.90500 * 0.02562 * 13 12 11 15 15 C 1.46896 * 120.65496 * 180.02562 * 14 13 12 16 16 N 1.31829 * 126.30008 * 179.97438 * 15 14 13 17 17 N 1.28674 * 109.33260 * 180.02562 * 16 15 14 18 18 C 1.31689 * 109.38939 * 359.97438 * 17 16 15 19 19 C 1.47599 * 126.25425 * 179.97438 * 18 17 16 20 20 C 1.39712 * 120.15351 * 179.76437 * 19 18 17 21 21 C 1.37925 * 119.83528 * 179.74760 * 20 19 18 22 22 C 1.38396 * 120.15570 * 0.55353 * 21 20 19 23 23 C 1.38391 * 120.31669 * 359.70147 * 22 21 20 24 24 C 1.37911 * 120.15961 * 0.02562 * 23 22 21 25 25 O 1.34836 * 107.48948 * 359.97438 * 18 17 16 26 26 H 0.97002 * 120.00150 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.02264 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.31240 * 179.68818 * 11 10 9 29 29 H 1.08001 * 119.34025 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.04943 * 180.02562 * 13 12 11 31 31 H 1.07995 * 120.07975 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.91913 * 180.27266 * 21 20 19 33 33 H 1.07993 * 119.83526 * 179.71482 * 22 21 20 34 34 H 1.08001 * 119.91410 * 180.02562 * 23 22 21 35 35 H 1.08002 * 120.08043 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 -1.4002 5 1 1.4390 2.6526 0.7000 6 1 3.5391 1.4402 0.7000 7 6 2.0080 -1.2132 -0.0005 8 1 3.0749 -1.2209 0.1672 9 6 1.3219 -2.4211 -0.2194 10 6 0.1756 -2.4577 -1.0381 11 6 -0.4824 -3.6343 -1.2355 12 6 -0.0443 -4.8150 -0.6495 13 6 1.0730 -4.8435 0.1554 14 6 1.7889 -3.6674 0.3956 15 6 2.9832 -3.6790 1.2508 16 7 3.7386 -2.6410 1.5504 17 7 4.6967 -3.0198 2.3212 18 6 4.5921 -4.3132 2.5454 19 6 5.4960 -5.1307 3.3781 20 6 5.2614 -6.4992 3.5332 21 6 6.1132 -7.2578 4.3086 22 6 7.1914 -6.6644 4.9414 23 6 7.4268 -5.3083 4.7965 24 6 6.5866 -4.5385 4.0197 25 8 3.5085 -4.7543 1.8752 26 1 -0.4850 0.8401 0.0004 27 1 -0.1845 -1.5525 -1.5043 28 1 -1.3627 -3.6493 -1.8609 29 1 -0.5908 -5.7292 -0.8286 30 1 1.3955 -5.7732 0.6002 31 1 4.4173 -6.9625 3.0442 32 1 5.9356 -8.3167 4.4259 33 1 7.8524 -7.2624 5.5511 34 1 8.2704 -4.8520 5.2929 35 1 6.7717 -3.4804 3.9071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253127147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:25 Heat of formation + Delta-G solvation = 80.756792 kcal Electronic energy + Delta-G solvation = -21449.404714 eV Core-core repulsion = 18185.800545 eV Total energy + Delta-G solvation = -3263.604169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.97611 -38.99763 -37.49419 -35.21245 -33.99529 -32.60958 -31.01511 -30.78185 -29.85480 -28.02426 -25.72392 -23.98924 -23.28767 -22.07188 -21.49163 -20.62047 -20.25848 -17.75222 -17.35806 -16.37205 -16.16097 -15.75873 -15.51135 -15.05870 -14.51683 -14.20734 -13.88551 -13.48801 -13.22551 -12.91820 -12.83689 -12.59278 -11.95465 -11.64324 -11.54394 -11.45791 -11.30183 -11.23191 -11.15705 -10.91265 -10.55968 -9.98283 -9.90991 -9.83940 -9.66339 -9.47925 -9.03702 -8.54996 -7.70032 -7.27350 -7.05744 -4.64918 0.75296 1.33443 1.81035 2.62313 2.82420 2.98677 2.99620 3.06023 3.13791 3.56381 3.79363 3.87263 4.39930 4.49235 4.84304 4.87485 5.04854 5.33181 5.35220 5.37624 5.50418 5.75544 5.85415 5.97485 6.09023 6.13580 6.15374 6.39296 6.41222 6.42827 6.56336 6.62769 6.78008 6.84843 6.85185 7.02605 7.27563 7.58059 7.74593 7.82660 7.96159 8.39054 8.49260 8.60779 9.25883 9.80148 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.004488 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.356239 B = 6237.055112 C = 7718.573565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.069 3.931 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.394 4.394 8 H 0.117 0.883 9 C 0.144 3.856 10 C -0.150 4.150 11 C -0.086 4.086 12 C -0.245 4.245 13 C -0.040 4.040 14 C -0.196 4.196 15 C 0.274 3.726 16 N -0.306 5.306 17 N -0.263 5.263 18 C 0.127 3.873 19 C 0.010 3.990 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.082 4.082 25 O -0.235 6.235 26 H 0.289 0.711 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 -7.576 5.131 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.154 4.154 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.421 4.421 8 H 0.135 0.865 9 C 0.139 3.861 10 C -0.169 4.169 11 C -0.105 4.105 12 C -0.265 4.265 13 C -0.060 4.060 14 C -0.201 4.201 15 C 0.077 3.923 16 N -0.154 5.154 17 N -0.113 5.113 18 C -0.080 4.080 19 C 0.008 3.992 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.101 4.101 25 O -0.119 6.119 26 H 0.101 0.899 27 H 0.143 0.857 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.701 -6.151 5.176 11.132 hybrid contribution -0.373 -0.579 0.035 0.690 sum 7.327 -6.730 5.211 11.232 Atomic orbital electron populations 1.69768 1.08017 1.30555 1.30749 1.26257 0.94911 1.02460 0.91732 0.86055 0.81121 0.78779 0.79718 1.18839 1.19904 1.17350 1.20424 0.98271 0.89601 1.33799 0.86536 1.18430 0.90395 0.89927 0.87324 1.21061 0.97847 0.97050 1.00896 1.20500 0.98116 0.93304 0.98579 1.20143 1.01030 0.97323 1.08006 1.20585 0.94249 0.95131 0.96027 1.18124 0.96594 0.96487 1.08931 1.25641 0.95508 0.78446 0.92717 1.75183 1.02796 1.23112 1.14283 1.74644 1.17564 1.07880 1.11184 1.24875 0.90144 0.91685 1.01272 1.17278 0.93493 0.91692 0.96694 1.21297 0.99673 0.92433 0.98400 1.21033 0.95152 0.99927 0.97689 1.21283 0.97630 0.95084 0.99417 1.21060 0.99604 0.93972 0.99142 1.21210 0.92756 1.00915 0.95243 1.84818 1.36094 1.39141 1.51802 0.89940 0.85741 0.88819 0.88726 0.88508 0.85296 0.85540 0.85838 0.85355 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.38 10.99 55.55 0.61 -17.77 16 2 C 0.07 1.63 5.25 -17.32 -0.09 1.54 16 3 Si 0.92 18.29 29.57 -169.99 -5.03 13.26 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.25 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.39 -10.15 8.10 -37.99 -0.31 -10.45 16 8 H 0.12 3.09 5.77 -52.49 -0.30 2.78 16 9 C 0.14 3.71 5.68 -104.61 -0.59 3.12 16 10 C -0.15 -3.60 8.60 -39.28 -0.34 -3.94 16 11 C -0.09 -1.86 9.91 -40.05 -0.40 -2.25 16 12 C -0.25 -5.17 9.98 -39.52 -0.39 -5.56 16 13 C -0.04 -0.89 9.74 -39.20 -0.38 -1.27 16 14 C -0.20 -4.87 6.08 -102.45 -0.62 -5.50 16 15 C 0.27 6.73 7.91 -14.05 -0.11 6.62 16 16 N -0.31 -7.73 9.31 31.97 0.30 -7.43 16 17 N -0.26 -6.05 11.92 32.09 0.38 -5.66 16 18 C 0.13 2.62 7.98 -13.80 -0.11 2.51 16 19 C 0.01 0.17 5.87 -104.98 -0.62 -0.45 16 20 C -0.10 -1.34 9.73 -39.15 -0.38 -1.73 16 21 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 22 C -0.12 -1.14 10.04 -39.47 -0.40 -1.53 16 23 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 24 C -0.08 -1.14 9.70 -39.15 -0.38 -1.52 16 25 O -0.24 -5.21 10.48 2.31 0.02 -5.19 16 26 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 27 H 0.12 3.00 6.40 -52.49 -0.34 2.67 16 28 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.10 1.94 7.96 -52.49 -0.42 1.52 16 31 H 0.13 1.71 7.93 -52.49 -0.42 1.30 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.14 1.91 7.86 -52.49 -0.41 1.50 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -28.18 312.71 -8.05 -36.23 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.13 Total: 5.64 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -5.92 Total: -23.79 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 1.29 Total: -30.87 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.02 Total: -5.19 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.18 -8.05 -36.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253127147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.983 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds