Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48512 * 109.47087 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00007 * 3 2 1 6 6 H 1.48499 * 109.47535 * 150.00255 * 3 2 1 7 7 C 1.40087 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 190.32873 * 7 2 1 9 9 C 1.40627 * 120.00216 * 10.32521 * 7 2 1 10 10 C 1.40917 * 120.63208 * 30.98402 * 9 7 2 11 11 C 1.36247 * 119.96277 * 180.32369 * 10 9 7 12 12 C 1.38908 * 121.37668 * 359.66741 * 11 10 9 13 13 C 1.37733 * 121.32653 * 0.02562 * 12 11 10 14 14 C 1.39763 * 119.90500 * 0.02562 * 13 12 11 15 15 C 1.46896 * 120.65496 * 180.02562 * 14 13 12 16 16 N 1.31829 * 126.30008 * 179.97438 * 15 14 13 17 17 N 1.28674 * 109.33260 * 180.02562 * 16 15 14 18 18 C 1.31689 * 109.38939 * 359.97438 * 17 16 15 19 19 C 1.47599 * 126.25425 * 179.97438 * 18 17 16 20 20 C 1.39712 * 120.15351 * 179.76437 * 19 18 17 21 21 C 1.37925 * 119.83528 * 179.74760 * 20 19 18 22 22 C 1.38396 * 120.15570 * 0.55353 * 21 20 19 23 23 C 1.38391 * 120.31669 * 359.70147 * 22 21 20 24 24 C 1.37911 * 120.15961 * 0.02562 * 23 22 21 25 25 O 1.34836 * 107.48948 * 359.97438 * 18 17 16 26 26 H 0.97002 * 120.00150 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.02264 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.31240 * 179.68818 * 11 10 9 29 29 H 1.08001 * 119.34025 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.04943 * 180.02562 * 13 12 11 31 31 H 1.07995 * 120.07975 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.91913 * 180.27266 * 21 20 19 33 33 H 1.07993 * 119.83526 * 179.71482 * 22 21 20 34 34 H 1.08001 * 119.91410 * 180.02562 * 23 22 21 35 35 H 1.08002 * 120.08043 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 -1.4002 5 1 1.4390 2.6526 0.7000 6 1 3.5391 1.4402 0.7000 7 6 2.0080 -1.2132 -0.0005 8 1 3.0749 -1.2209 0.1672 9 6 1.3219 -2.4211 -0.2194 10 6 0.1756 -2.4577 -1.0381 11 6 -0.4824 -3.6343 -1.2355 12 6 -0.0443 -4.8150 -0.6495 13 6 1.0730 -4.8435 0.1554 14 6 1.7889 -3.6674 0.3956 15 6 2.9832 -3.6790 1.2508 16 7 3.7386 -2.6410 1.5504 17 7 4.6967 -3.0198 2.3212 18 6 4.5921 -4.3132 2.5454 19 6 5.4960 -5.1307 3.3781 20 6 5.2614 -6.4992 3.5332 21 6 6.1132 -7.2578 4.3086 22 6 7.1914 -6.6644 4.9414 23 6 7.4268 -5.3083 4.7965 24 6 6.5866 -4.5385 4.0197 25 8 3.5085 -4.7543 1.8752 26 1 -0.4850 0.8401 0.0004 27 1 -0.1845 -1.5525 -1.5043 28 1 -1.3627 -3.6493 -1.8609 29 1 -0.5908 -5.7292 -0.8286 30 1 1.3955 -5.7732 0.6002 31 1 4.4173 -6.9625 3.0442 32 1 5.9356 -8.3167 4.4259 33 1 7.8524 -7.2624 5.5511 34 1 8.2704 -4.8520 5.2929 35 1 6.7717 -3.4804 3.9071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253127147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = 63.701096 kcal Electronic energy + Delta-G solvation = -21450.144304 eV Core-core repulsion = 18185.800545 eV Total energy + Delta-G solvation = -3264.343760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.72900 -40.00200 -39.25684 -36.98302 -35.77082 -34.04250 -32.27363 -31.98017 -31.63258 -29.62284 -27.51767 -25.42771 -24.86743 -23.25577 -22.98500 -22.21077 -21.99441 -19.44663 -18.74273 -18.14003 -17.70515 -17.34155 -16.74557 -16.57571 -15.99087 -15.61941 -15.16894 -14.76745 -14.51898 -14.41872 -14.33817 -14.01162 -13.71264 -13.35559 -13.25029 -13.00648 -12.83450 -12.73970 -12.49333 -12.20423 -12.07178 -11.69902 -11.58549 -11.46880 -11.38759 -11.21423 -9.98528 -9.91727 -9.48431 -9.00758 -8.80585 -6.51369 -0.57876 0.24240 0.39253 0.91587 1.23922 1.33860 1.34355 1.46187 1.50708 1.78942 2.15799 2.61683 2.81517 3.00785 3.52695 3.63313 3.88812 3.98708 4.17243 4.21192 4.33807 4.43448 4.46983 4.52416 4.63971 4.70581 4.83446 4.92503 5.00432 5.06650 5.07031 5.24313 5.44271 5.44984 5.49056 5.50261 5.82136 5.93240 5.94180 6.04867 6.18221 6.54249 6.65378 6.79475 7.49614 8.07629 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.004488 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.356239 B = 6237.055112 C = 7718.573565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.249 1.249 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.432 4.432 8 H 0.097 0.903 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.080 4.080 12 C -0.237 4.237 13 C -0.048 4.048 14 C -0.220 4.220 15 C 0.253 3.747 16 N -0.333 5.333 17 N -0.303 5.303 18 C 0.156 3.844 19 C -0.038 4.038 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.115 4.115 24 C -0.089 4.089 25 O -0.236 6.236 26 H 0.299 0.701 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -10.123 6.541 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.173 1.173 5 H -0.182 1.182 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.115 0.885 9 C 0.115 3.885 10 C -0.192 4.192 11 C -0.099 4.099 12 C -0.256 4.256 13 C -0.067 4.067 14 C -0.224 4.224 15 C 0.054 3.946 16 N -0.180 5.180 17 N -0.150 5.150 18 C -0.052 4.052 19 C -0.039 4.039 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.109 4.109 25 O -0.119 6.119 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.179 0.821 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.783 -8.691 6.584 14.001 hybrid contribution -0.531 -0.118 -0.211 0.584 sum 8.252 -8.809 6.374 13.650 Atomic orbital electron populations 1.69763 1.08743 1.31778 1.31340 1.26880 0.95645 1.04591 0.91042 0.85201 0.78962 0.75528 0.80238 1.17299 1.18182 1.19487 1.20410 0.97700 0.91074 1.36724 0.88503 1.18772 0.91364 0.90459 0.87882 1.21071 0.98388 0.97989 1.01724 1.20887 0.98454 0.92530 0.97999 1.20586 1.00251 0.98520 1.06232 1.20883 0.94475 0.95031 0.96341 1.18472 0.97210 0.97378 1.09374 1.25710 0.96148 0.78919 0.93841 1.75106 1.03615 1.24222 1.15085 1.74577 1.18124 1.09318 1.13019 1.25946 0.88879 0.91542 0.98834 1.17544 0.94648 0.92726 0.99022 1.21443 1.00403 0.91433 0.98959 1.21462 0.94314 1.01381 0.96108 1.21858 0.96857 0.94771 0.97533 1.21461 0.99495 0.94483 0.97857 1.21317 0.92821 1.00959 0.95810 1.84804 1.36613 1.38623 1.51898 0.88943 0.86541 0.85465 0.84898 0.86511 0.85595 0.82035 0.81445 0.82059 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.27 10.99 21.85 0.24 -39.03 16 2 C 0.04 1.89 5.25 85.30 0.45 2.33 16 3 Si 0.98 39.12 29.57 68.60 2.03 41.15 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.43 -23.75 8.10 23.30 0.19 -23.56 16 8 H 0.10 5.58 5.77 -2.91 -0.02 5.57 16 9 C 0.12 6.50 5.68 -19.85 -0.11 6.38 16 10 C -0.17 -8.54 8.60 22.46 0.19 -8.35 16 11 C -0.08 -3.37 9.91 21.97 0.22 -3.16 16 12 C -0.24 -9.55 9.98 22.31 0.22 -9.33 16 13 C -0.05 -2.11 9.74 22.52 0.22 -1.89 16 14 C -0.22 -11.37 6.08 -18.46 -0.11 -11.48 16 15 C 0.25 13.19 7.91 86.96 0.69 13.87 16 16 N -0.33 -18.10 9.31 -166.21 -1.55 -19.64 16 17 N -0.30 -14.85 11.92 -165.99 -1.98 -16.83 16 18 C 0.16 6.71 7.98 87.19 0.70 7.41 16 19 C -0.04 -1.22 5.87 -20.09 -0.12 -1.34 16 20 C -0.10 -2.64 9.73 22.55 0.22 -2.42 16 21 C -0.12 -1.98 10.03 22.23 0.22 -1.76 16 22 C -0.09 -1.32 10.04 22.34 0.22 -1.09 16 23 C -0.12 -2.06 10.03 22.23 0.22 -1.84 16 24 C -0.09 -2.42 9.70 22.55 0.22 -2.20 16 25 O -0.24 -10.91 10.48 -14.65 -0.15 -11.06 16 26 H 0.30 13.15 8.29 -92.71 -0.77 12.38 16 27 H 0.12 5.84 6.40 -2.91 -0.02 5.82 16 28 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.12 4.59 7.96 -2.91 -0.02 4.57 16 31 H 0.13 3.24 7.93 -2.91 -0.02 3.21 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.13 3.60 7.86 -2.91 -0.02 3.58 16 Total: -1.00 -66.93 312.71 3.36 -63.57 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.13 Total: 20.25 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.64 Total: -38.41 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.29 Total: -75.50 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.15 Total: -11.06 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -66.93 3.36 -63.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253127147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.275 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds