Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47132 * 270.02352 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 S 1.71195 * 119.99818 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.52999 * 117.49969 * 223.62055 * 20 19 17 22 22 C 1.52998 * 117.50227 * 154.99601 * 20 19 17 23 23 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 27 27 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 32 32 H 1.09008 * 115.54781 * 9.32520 * 20 19 17 33 33 H 1.08996 * 117.49556 * 0.02562 * 21 20 19 34 34 H 1.09003 * 117.50007 * 145.01599 * 21 20 19 35 35 H 1.08994 * 117.50132 * 214.97951 * 22 20 19 36 36 H 1.09001 * 117.49669 * 359.97438 * 22 20 19 37 37 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 7 1.2715 -7.7887 -0.8671 17 6 0.6661 -8.9860 -0.9963 18 16 0.1658 -9.8468 0.3964 19 7 0.4556 -9.5059 -2.2218 20 6 -0.2029 -10.8070 -2.3623 21 6 0.3903 -11.7939 -3.3696 22 6 -0.9335 -11.0909 -3.6762 23 6 1.4365 -4.7345 0.2252 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2810 -4.5475 0.1869 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9004 1.0432 29 1 0.5456 -7.0925 0.9733 30 1 1.5547 -7.3008 -1.6562 31 1 0.7394 -9.0183 -3.0109 32 1 -0.6329 -11.2173 -1.4485 33 1 1.2709 -11.4753 -3.9275 34 1 0.3510 -12.8540 -3.1187 35 1 -1.8438 -11.6883 -3.6271 36 1 -0.9246 -10.3094 -4.4360 37 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318782317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = 40.610138 kcal Electronic energy + Delta-G solvation = -19616.919422 eV Core-core repulsion = 16487.018315 eV Total energy + Delta-G solvation = -3129.901107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.64561 -39.09310 -37.57479 -36.37435 -33.69655 -32.40434 -30.78970 -29.23894 -26.22515 -25.24577 -23.76120 -22.79584 -22.49539 -21.82271 -21.00309 -18.89268 -17.74931 -17.45185 -16.99276 -15.71294 -15.46055 -15.27066 -15.07839 -14.60934 -14.44427 -14.40875 -13.71771 -13.61566 -13.15081 -12.89387 -12.55930 -12.44291 -11.98846 -11.78249 -11.46501 -11.17610 -10.99851 -10.97802 -10.90795 -10.90147 -10.74499 -10.53183 -9.50103 -9.05361 -8.96570 -8.41070 -7.85162 -7.46342 -7.38718 -6.56149 -4.16008 1.32853 1.62030 2.01495 2.16158 2.54281 3.04992 3.06778 3.11614 3.46152 3.49052 3.86400 4.33343 4.40152 4.52134 4.62252 4.75918 4.98127 5.14592 5.21237 5.37032 5.42725 5.50236 5.63935 5.65526 5.72783 5.75862 5.95641 5.97825 6.14148 6.39076 6.45763 6.68890 6.70924 6.89943 7.05888 7.15835 7.19694 7.26957 7.59726 7.87436 8.88920 9.56092 10.61345 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002833 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.921570 B = 9881.216666 C =10264.223889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.222 4.222 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.081 4.081 15 C 0.173 3.827 16 N -0.668 5.668 17 C 0.568 3.432 18 S -0.651 6.651 19 N -0.665 5.665 20 C 0.080 3.920 21 C -0.188 4.188 22 C -0.187 4.187 23 C -0.169 4.169 24 H 0.272 0.728 25 H 0.129 0.871 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.400 0.600 31 H 0.398 0.602 32 H 0.168 0.832 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -15.777 -7.577 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.095 3.905 11 C -0.242 4.242 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.082 4.082 15 C 0.051 3.949 16 N -0.295 5.295 17 C 0.208 3.792 18 S -0.526 6.526 19 N -0.294 5.294 20 C -0.027 4.027 21 C -0.226 4.226 22 C -0.225 4.225 23 C -0.189 4.189 24 H 0.082 0.918 25 H 0.146 0.854 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.237 0.763 31 H 0.234 0.766 32 H 0.185 0.815 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.728 -16.117 -6.524 17.600 hybrid contribution 1.124 1.869 -1.583 2.695 sum 3.852 -14.248 -8.107 16.839 Atomic orbital electron populations 1.70036 1.06002 1.27899 1.45400 1.25315 0.95864 0.98918 0.96338 0.85697 0.78963 0.79945 0.78761 1.19832 1.20128 1.19125 1.21331 0.91809 0.80704 1.53239 0.88989 1.83982 1.34307 1.11423 1.78038 1.19315 0.90259 0.88087 0.92798 1.21277 0.93846 0.99179 1.09909 1.20758 0.98663 0.92211 0.97790 1.20502 0.93274 0.97244 1.10292 1.19254 0.93529 0.92620 1.02755 1.20594 1.01989 0.91384 0.80975 1.45334 1.55783 1.16563 1.11844 1.22156 0.81592 0.84909 0.90573 1.93405 1.69909 1.64279 1.25029 1.44225 1.59144 1.20915 1.05157 1.22247 0.99984 0.83117 0.97314 1.23434 0.97072 0.99174 1.02966 1.23423 0.96947 1.03582 0.98585 1.20109 0.99498 0.89863 1.09404 0.91847 0.85362 0.87165 0.87388 0.88835 0.88756 0.76296 0.76600 0.81516 0.88621 0.87418 0.87296 0.88538 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.51 13.67 55.48 0.76 -23.75 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.59 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 9 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 10 C 0.15 3.37 6.65 -39.11 -0.26 3.11 16 11 C -0.22 -4.48 9.17 -39.39 -0.36 -4.84 16 12 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 13 C -0.19 -2.98 9.70 -39.53 -0.38 -3.37 16 14 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 15 C 0.17 2.37 5.25 -5.19 -0.03 2.34 16 16 N -0.67 -7.81 5.55 -63.22 -0.35 -8.16 16 17 C 0.57 7.05 7.98 -86.92 -0.69 6.35 16 18 S -0.65 -10.70 27.11 -107.50 -2.91 -13.61 16 19 N -0.67 -6.07 5.57 -55.52 -0.31 -6.38 16 20 C 0.08 0.69 6.27 -67.93 -0.43 0.26 16 21 C -0.19 -1.20 10.46 -26.73 -0.28 -1.48 16 22 C -0.19 -1.16 10.46 -26.73 -0.28 -1.44 16 23 C -0.17 -3.26 9.65 -39.40 -0.38 -3.64 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 26 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 29 H 0.09 1.41 7.93 -51.93 -0.41 0.99 16 30 H 0.40 3.98 8.48 -40.82 -0.35 3.63 16 31 H 0.40 2.60 8.84 -40.82 -0.36 2.24 16 32 H 0.17 1.80 6.43 -51.92 -0.33 1.47 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -31.79 333.89 -11.18 -42.96 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.53 Total: 9.36 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -3.84 Total: -15.50 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.10 Total: -38.29 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.00 Total: -4.75 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -2.91 Total: -13.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.79 -11.18 -42.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318782317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.573 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds