Wall clock time and date at job start Tue Mar 31 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47132 * 270.02352 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 S 1.71195 * 119.99818 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.52999 * 117.49969 * 223.62055 * 20 19 17 22 22 C 1.52998 * 117.50227 * 154.99601 * 20 19 17 23 23 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 27 27 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 32 32 H 1.09008 * 115.54781 * 9.32520 * 20 19 17 33 33 H 1.08996 * 117.49556 * 0.02562 * 21 20 19 34 34 H 1.09003 * 117.50007 * 145.01599 * 21 20 19 35 35 H 1.08994 * 117.50132 * 214.97951 * 22 20 19 36 36 H 1.09001 * 117.49669 * 359.97438 * 22 20 19 37 37 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 7 1.2715 -7.7887 -0.8671 17 6 0.6661 -8.9860 -0.9963 18 16 0.1658 -9.8468 0.3964 19 7 0.4556 -9.5059 -2.2218 20 6 -0.2029 -10.8070 -2.3623 21 6 0.3903 -11.7939 -3.3696 22 6 -0.9335 -11.0909 -3.6762 23 6 1.4365 -4.7345 0.2252 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2810 -4.5475 0.1869 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9004 1.0432 29 1 0.5456 -7.0925 0.9733 30 1 1.5547 -7.3008 -1.6562 31 1 0.7394 -9.0183 -3.0109 32 1 -0.6329 -11.2173 -1.4485 33 1 1.2709 -11.4753 -3.9275 34 1 0.3510 -12.8540 -3.1187 35 1 -1.8438 -11.6883 -3.6271 36 1 -0.9246 -10.3094 -4.4360 37 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318782317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:53 Heat of formation + Delta-G solvation = 20.693989 kcal Electronic energy + Delta-G solvation = -19617.783051 eV Core-core repulsion = 16487.018315 eV Total energy + Delta-G solvation = -3130.764736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00307 -40.23625 -38.79948 -37.62297 -34.71143 -34.26614 -32.10352 -30.79285 -27.69284 -26.93679 -24.80306 -23.41243 -23.29661 -23.20755 -22.46905 -20.08765 -19.31697 -18.75694 -18.25955 -16.87155 -16.62997 -16.56199 -16.32791 -16.05146 -15.75835 -15.55683 -15.28902 -14.94611 -14.38290 -14.03967 -13.78494 -13.74076 -13.45125 -13.04774 -12.55283 -12.46224 -12.44745 -12.33367 -12.28855 -12.13671 -11.72409 -11.51703 -11.24142 -10.83361 -9.90239 -9.85541 -9.08499 -9.05758 -8.68294 -8.48985 -6.17722 0.25150 0.30899 0.66124 0.88069 1.34983 1.42750 1.52194 1.53371 2.15839 2.49490 2.83669 2.91507 3.12223 3.34361 3.71115 3.73300 3.99405 4.05444 4.07832 4.26816 4.36547 4.47276 4.55948 4.62129 4.69450 4.74605 4.97266 4.99420 5.04497 5.09200 5.18769 5.21330 5.51733 5.58469 5.65660 5.67736 5.83716 5.99201 6.11905 6.32308 6.95874 7.75317 8.73958 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002833 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.921570 B = 9881.216666 C =10264.223889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.231 4.231 12 C -0.069 4.069 13 C -0.165 4.165 14 C -0.064 4.064 15 C 0.185 3.815 16 N -0.659 5.659 17 C 0.588 3.412 18 S -0.732 6.732 19 N -0.641 5.641 20 C 0.046 3.954 21 C -0.171 4.171 22 C -0.169 4.169 23 C -0.178 4.178 24 H 0.272 0.728 25 H 0.121 0.879 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.413 0.587 31 H 0.415 0.585 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -17.500 -9.109 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.138 6.138 10 C 0.062 3.938 11 C -0.250 4.250 12 C -0.087 4.087 13 C -0.184 4.184 14 C -0.065 4.065 15 C 0.062 3.938 16 N -0.287 5.287 17 C 0.223 3.777 18 S -0.608 6.608 19 N -0.269 5.269 20 C -0.059 4.059 21 C -0.210 4.210 22 C -0.208 4.208 23 C -0.198 4.198 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.252 0.748 31 H 0.255 0.745 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.524 -17.907 -8.114 20.421 hybrid contribution 0.372 2.001 -1.183 2.354 sum 5.897 -15.906 -9.297 19.345 Atomic orbital electron populations 1.70186 1.08071 1.28823 1.48776 1.26582 0.96803 1.02779 0.95862 0.84598 0.77850 0.74611 0.79263 1.18741 1.19868 1.17540 1.21821 0.92553 0.81312 1.53190 0.87839 1.83950 1.35964 1.12580 1.81328 1.19850 0.91639 0.87848 0.94489 1.21411 0.93002 1.00507 1.10109 1.21172 1.00502 0.91079 0.95977 1.21019 0.92976 0.98367 1.06007 1.19392 0.93948 0.92241 1.00911 1.20366 1.01291 0.90263 0.81906 1.45006 1.55769 1.16323 1.11623 1.21593 0.81189 0.84507 0.90423 1.93599 1.73090 1.66221 1.27920 1.44204 1.57229 1.20943 1.04543 1.22273 1.02457 0.83463 0.97752 1.23513 0.97581 0.98997 1.00861 1.23521 0.97329 1.03450 0.96470 1.20233 0.99459 0.90181 1.09929 0.91856 0.86101 0.83268 0.83301 0.87861 0.90212 0.74777 0.74527 0.84007 0.87442 0.86690 0.86475 0.87281 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.52 13.67 21.61 0.30 -55.22 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 7 C -0.41 -23.13 9.49 67.92 0.64 -22.49 16 8 H 0.10 5.25 5.21 -2.91 -0.02 5.24 16 9 O -0.23 -13.37 9.76 -22.74 -0.22 -13.60 16 10 C 0.11 5.19 6.65 22.58 0.15 5.34 16 11 C -0.23 -9.11 9.17 22.39 0.21 -8.90 16 12 C -0.07 -2.05 10.04 22.25 0.22 -1.83 16 13 C -0.16 -4.33 9.70 22.30 0.22 -4.12 16 14 C -0.06 -1.89 5.25 -19.88 -0.10 -1.99 16 15 C 0.18 4.70 5.25 85.63 0.45 5.15 16 16 N -0.66 -13.85 5.55 -353.92 -1.97 -15.82 16 17 C 0.59 13.59 7.98 179.05 1.43 15.02 16 18 S -0.73 -24.09 27.11 -56.49 -1.53 -25.62 16 19 N -0.64 -10.18 5.57 -329.56 -1.84 -12.02 16 20 C 0.05 0.72 6.27 44.99 0.28 1.00 16 21 C -0.17 -1.68 10.46 30.59 0.32 -1.36 16 22 C -0.17 -1.63 10.46 30.59 0.32 -1.31 16 23 C -0.18 -6.95 9.65 22.39 0.22 -6.73 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.12 4.89 5.64 -2.91 -0.02 4.87 16 26 H 0.15 3.32 8.06 -2.92 -0.02 3.30 16 27 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.10 2.54 7.93 -2.39 -0.02 2.52 16 29 H 0.08 2.34 7.93 -2.39 -0.02 2.32 16 30 H 0.41 6.91 8.48 -92.71 -0.79 6.13 16 31 H 0.42 4.00 8.84 -92.71 -0.82 3.18 16 32 H 0.14 3.05 6.43 -2.38 -0.02 3.04 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -75.50 333.89 1.10 -74.41 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.49 Total: 27.27 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.82 Total: -22.99 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.51 Total: -83.06 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.22 Total: -13.60 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: -24.09 SS G_CDS: -1.53 Total: -25.62 kcal Total: -75.50 1.10 -74.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318782317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.100 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds